prot_P-lacustris_contig932.15741.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-lacustris_contig932.15741.1
Unique Nameprot_P-lacustris_contig932.15741.1
Typepolypeptide
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length380
Homology
BLAST of mRNA_P-lacustris_contig932.15741.1 vs. uniprot
Match: D7G2B0_ECTSI (Putative 30S ribosomal protein S18 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2B0_ECTSI)

HSP 1 Score: 324 bits (831), Expect = 3.160e-105
Identity = 224/402 (55.72%), Postives = 243/402 (60.45%), Query Frame = 0
Query:    1 MLGTVRAGVRSGACSTRRAGRSSRLAVSAPVSAVPLPLGLLPPHPRSSRGVSHLARLSAAAVSRRGDARVARTFHARRNRAPATGLNGGRGWGAGEARGKDXXXXXXXXXXXXXXXXXXXEAEDGTDGGPDFRNGPGRGDEKRAKGERGETLAPVGDVAGSKGSAARERTDVTSAAAAASPGDNGEEDAGARDAGEDADASQEL--------------------GDYDYRSIGREIYEGGDLEAGDTMRGMYDFMDDIAETQHVPTIQDPFDHKGR---CRGKKQGKAALPSICQIFDMKELHINHTPLLKRFVNDEGMILGRYRTGLCAKCQRKVARTIKAARQMGLVPTISNYEVRDTGPGGLFAWAGKDGDHDAMAKXXXXXXAARQKNKTKKRFGSLA 379
            M GTVRAG RS ACST RAGR SR A S+ + A PL LGLLPPHPRS RGV HL R SA A S R  AR  R FH    R  A G+ GG G   G+A    XXXXXXXXXXXXXXXXXXX                                                                                                        G+YDYRSIG E+YEGGDLEAG+T+RGMYDF+DDI ETQHVPTIQDPFDH+GR   C GKKQGKAALPS CQIFD+KELH+NHTPLLKRFVND GMILGRYRTGLCAKCQRKVA T+KAARQMGLVPT+S+YEVRDTGPGGL+AWAGKDGDHDAMAK       AR+K++TKKRFGSLA
Sbjct:    1 MFGTVRAGARSAACSTSRAGRPSRPAASSSMFAAPLRLGLLPPHPRSVRGVCHLPRRSATAASHRVVARGTRPFHGVSGR--ARGVEGGEGLDWGQAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEYDYRSIGSEVYEGGDLEAGETIRGMYDFVDDIVETQHVPTIQDPFDHRGRFHRCPGKKQGKAALPSTCQIFDVKELHVNHTPLLKRFVNDAGMILGRYRTGLCAKCQRKVAHTVKAARQMGLVPTVSDYEVRDTGPGGLYAWAGKDGDHDAMAKAKVAAEMARKKSETKKRFGSLA 400          
BLAST of mRNA_P-lacustris_contig932.15741.1 vs. uniprot
Match: A0A836CMS6_9STRA (Ribosomal protein S18-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMS6_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 3.000e-20
Identity = 50/105 (47.62%), Postives = 64/105 (60.95%), Query Frame = 0
Query:  231 MYDFMDDIAETQHVPTIQDPFDHKGRCRGKKQGKAALPSICQIFDMKELHINHTPLLKRFVNDEGMILGRYRTGLCAKCQRKVARTIKAARQMGLVPTISNYEVR 335
            M+DF      TQ  P    P+ HK  C G +QGK+     C+IF+  +LH  +  LLKRF +   MI+ R RTGLCA+CQRKVART+K AR MG +P I  Y V+
Sbjct:    1 MFDFTRS-RPTQLAPGEVTPWIHK--CPGHRQGKSGFSGRCEIFNQWDLHFQNVVLLKRFSSASAMIMPRRRTGLCARCQRKVARTVKRARHMGAIPYIGTYGVK 102          
BLAST of mRNA_P-lacustris_contig932.15741.1 vs. uniprot
Match: A0A7S1TPF7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TPF7_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.000e-12
Identity = 43/112 (38.39%), Postives = 67/112 (59.82%), Query Frame = 0
Query:  229 RGMYDFMD--DIAETQHVPTIQDPFDH-KGRCRGKKQGKAA-LPSICQIFDMKELHINHTPLLKRFVNDEGMILGRYRTGLCAKCQRKVARTIKAARQMGLVPTISNYEVRD 336
            +G YD  D   + E + VP    P+   +  C+GKKQ +A+   + C + D+ E+   +  LL++F++  G I  R  T LC KCQ+KVARTIKA+R +GL+P   ++ V+D
Sbjct:  190 KGSYDRYDYEGVPEAERVPVF--PWQKTQDNCKGKKQRRASHRAATCDLIDLDEVMPTNVILLRKFIDPAGAIRHRRETKLCNKCQKKVARTIKASRNLGLMPFTQSFRVKD 299          
BLAST of mRNA_P-lacustris_contig932.15741.1 vs. uniprot
Match: W7TXB5_9STRA (30s ribosomal protein s18 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TXB5_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.500e-12
Identity = 37/73 (50.68%), Postives = 50/73 (68.49%), Query Frame = 0
Query:  255 GRCRGKKQGKAALPSICQIFDMKELHINHTPLLKRFVNDEGMILGRYRTGLCAKCQRKVARTIKAARQMGLVP 327
            G CRGK Q +   P +C+  D+ EL  ++  +L +FV+  GMI  R  +GLCAKCQRKVARTIK AR +G++P
Sbjct:  112 GVCRGKLQRRGNQPLLCKKIDLGELEFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLP 184          
BLAST of mRNA_P-lacustris_contig932.15741.1 vs. uniprot
Match: A0A7R9YBR6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBR6_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 2.700e-12
Identity = 42/107 (39.25%), Postives = 66/107 (61.68%), Query Frame = 0
Query:  232 YDFMDDIAETQHVPTIQDPFDHK-GRCRGKKQGKAA-LPSICQIFDMKELHINHTPLLKRFVNDEGMILGRYRTGLCAKCQRKVARTIKAARQMGLVPTISNYEVRD 336
            YDF D + ++  VP +  P+      C GK+Q +++   + C + D+ E+   +  LL+++V+  GMI  R  T LC KCQRKVA+ IKA+R MGL+P + N+ V+D
Sbjct:  244 YDF-DGVPQSDRVPLM--PWQRNTSNCSGKQQRRSSHRAAACDLIDLDEVMPTNVLLLRKYVDSGGMIRHRRETKLCNKCQRKVAKAIKASRNMGLMPFMHNFRVKD 347          
BLAST of mRNA_P-lacustris_contig932.15741.1 vs. uniprot
Match: W7TNB2_9STRA (30s ribosomal protein s18 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNB2_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 4.240e-12
Identity = 37/73 (50.68%), Postives = 50/73 (68.49%), Query Frame = 0
Query:  255 GRCRGKKQGKAALPSICQIFDMKELHINHTPLLKRFVNDEGMILGRYRTGLCAKCQRKVARTIKAARQMGLVP 327
            G CRGK Q +   P +C+  D+ EL  ++  +L +FV+  GMI  R  +GLCAKCQRKVARTIK AR +G++P
Sbjct:  192 GVCRGKLQRRGNQPLLCKKIDLGELEFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLP 264          
BLAST of mRNA_P-lacustris_contig932.15741.1 vs. uniprot
Match: A0A7S2E188_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2E188_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 9.560e-11
Identity = 32/77 (41.56%), Postives = 48/77 (62.34%), Query Frame = 0
Query:  260 KKQGKAALPSICQIFDMKELHINHTPLLKRFVNDEGMILGRYRTGLCAKCQRKVARTIKAARQMGLVPTISNYEVRD 336
            ++ G     + C I D+ +LH  +  +L+  ++  GMI  R  TGLCAKCQRK ++TIK ARQ+G++P +  Y  RD
Sbjct:  131 RRNGHPCKKNCCGI-DLDDLHFTNIAMLEYLISPTGMIRPRRHTGLCAKCQRKASKTIKLARQLGMIPFVQEYRTRD 206          
BLAST of mRNA_P-lacustris_contig932.15741.1 vs. uniprot
Match: A0A6B1DZN8_9CHLR (30S ribosomal protein S18 n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6B1DZN8_9CHLR)

HSP 1 Score: 61.6 bits (148), Expect = 1.960e-8
Identity = 33/78 (42.31%), Postives = 51/78 (65.38%), Query Frame = 0
Query:  253 HKGRCRGKKQGKAALPSICQIFDMKELHINHTPLLKRFVNDEGMILGRYRTGLCAKCQRKVARTIKAARQMGLVPTIS 330
            ++GR RG++ GK++     + FD K++ I     L RF+N+ G I  R +TG CA+CQR++AR IK AR + L+P +S
Sbjct:   22 YQGRRRGRR-GKSSYCPKGRCFDYKDIDI-----LSRFINESGKIKPRRQTGNCARCQRQLAREIKRARHLALLPYVS 93          
BLAST of mRNA_P-lacustris_contig932.15741.1 vs. uniprot
Match: UPI001AFC1A1C (30S ribosomal protein S18 n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=UPI001AFC1A1C)

HSP 1 Score: 60.1 bits (144), Expect = 4.680e-8
Identity = 33/76 (43.42%), Postives = 47/76 (61.84%), Query Frame = 0
Query:  258 RGKKQGKAALPSICQIFDMKELHINH--TPLLKRFVNDEGMILGRYRTGLCAKCQRKVARTIKAARQMGLVPTISN 331
            RG+     +   +CQ  + K+L IN+  T LL+R+++D G I  R +TG CAK QR VA+ IK AR + L+P  SN
Sbjct:    5 RGRGNRYFSRSKVCQFCNDKDLVINYKNTDLLRRYIDDTGKIRPRRQTGACAKHQRAVAKAIKNARHIALLPFSSN 80          
BLAST of mRNA_P-lacustris_contig932.15741.1 vs. uniprot
Match: A0A7C3GB66_9CHLR (30S ribosomal protein S18 n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C3GB66_9CHLR)

HSP 1 Score: 60.1 bits (144), Expect = 5.060e-8
Identity = 29/70 (41.43%), Postives = 43/70 (61.43%), Query Frame = 0
Query:  268 PSICQIFDMKELHINH--TPLLKRFVNDEGMILGRYRTGLCAKCQRKVARTIKAARQMGLVPTISNYEVR 335
            P +CQ    K  HI++    LL+R++ D+G I  R +TG CAK QR++AR IK AR + L+P +    +R
Sbjct:   14 PKVCQFCVEKVDHIDYKQVDLLRRYITDDGKIRPRRQTGTCAKHQRQLARAIKRARHLALLPFVGEVSIR 83          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig932.15741.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2B0_ECTSI3.160e-10555.72Putative 30S ribosomal protein S18 n=2 Tax=Ectocar... [more]
A0A836CMS6_9STRA3.000e-2047.62Ribosomal protein S18-domain-containing protein n=... [more]
A0A7S1TPF7_9STRA1.000e-1238.39Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
W7TXB5_9STRA1.500e-1250.6830s ribosomal protein s18 n=1 Tax=Nannochloropsis ... [more]
A0A7R9YBR6_9STRA2.700e-1239.25Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
W7TNB2_9STRA4.240e-1250.6830s ribosomal protein s18 n=2 Tax=Monodopsidaceae ... [more]
A0A7S2E188_9STRA9.560e-1141.56Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6B1DZN8_9CHLR1.960e-842.3130S ribosomal protein S18 n=1 Tax=Chloroflexi bact... [more]
UPI001AFC1A1C4.680e-843.4230S ribosomal protein S18 n=1 Tax=Chloroflexi bact... [more]
A0A7C3GB66_9CHLR5.060e-841.4330S ribosomal protein S18 n=1 Tax=Chloroflexi bact... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001648Ribosomal protein S18PRINTSPR00974RIBOSOMALS18coord: 318..328
score: 48.21
coord: 286..296
score: 36.91
coord: 304..318
score: 45.05
IPR001648Ribosomal protein S18TIGRFAMTIGR00165TIGR00165coord: 271..330
e-value: 4.0E-11
score: 41.0
IPR001648Ribosomal protein S18PFAMPF01084Ribosomal_S18coord: 283..325
e-value: 2.8E-15
score: 56.3
IPR036870Ribosomal protein S18 superfamilyGENE3D4.10.640.10coord: 264..332
e-value: 1.7E-20
score: 74.3
IPR036870Ribosomal protein S18 superfamilySUPERFAMILY46911Ribosomal protein S18coord: 269..331
NoneNo IPR availablePANTHERPTHR13479:SF4028S RIBOSOMAL PROTEIN S18C, MITOCHONDRIALcoord: 271..336
NoneNo IPR availablePANTHERPTHR1347930S RIBOSOMAL PROTEIN S18coord: 271..336
NoneNo IPR availablePRODOMPD002239coord: 286..327
e-value: 2.0E-7
score: 135.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig932contigP-lacustris_contig932:43042..47079 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig932.15741.1mRNA_P-lacustris_contig932.15741.1Pleurocladia lacustris SAG_25_93mRNAP-lacustris_contig932 42173..47139 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-lacustris_contig932.15741.1 ID=prot_P-lacustris_contig932.15741.1|Name=mRNA_P-lacustris_contig932.15741.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=380bp
MLGTVRAGVRSGACSTRRAGRSSRLAVSAPVSAVPLPLGLLPPHPRSSRG
VSHLARLSAAAVSRRGDARVARTFHARRNRAPATGLNGGRGWGAGEARGK
DDDGDSSSSSSSSDSSDDDSEAEDGTDGGPDFRNGPGRGDEKRAKGERGE
TLAPVGDVAGSKGSAARERTDVTSAAAAASPGDNGEEDAGARDAGEDADA
SQELGDYDYRSIGREIYEGGDLEAGDTMRGMYDFMDDIAETQHVPTIQDP
FDHKGRCRGKKQGKAALPSICQIFDMKELHINHTPLLKRFVNDEGMILGR
YRTGLCAKCQRKVARTIKAARQMGLVPTISNYEVRDTGPGGLFAWAGKDG
DHDAMAKAKAVAEAARQKNKTKKRFGSLA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001648Ribosomal_S18
IPR036870Ribosomal_S18_sf