prot_P-lacustris_contig918.15623.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-lacustris_contig918.15623.1
Unique Nameprot_P-lacustris_contig918.15623.1
Typepolypeptide
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length302
Homology
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BLAST of mRNA_P-lacustris_contig918.15623.1 vs. uniprot
Match: D7G3M8_ECTSI (Similar to metal response element-binding transcription factor-1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3M8_ECTSI)

HSP 1 Score: 202 bits (515), Expect = 1.520e-57
Identity = 131/175 (74.86%), Postives = 140/175 (80.00%), Query Frame = 0 
Query:  115 VSSRSVGATGGWGGGGTDTYECILCGKIFGKACKLARHAATHTGDKPFVCDEVGCTXXXXXXXXXXXXXXXXXRRKAGLSTSVGNAARREAETRQRAAQFVAEAAAAGISLEAPRVAG-KETRRYLPLMKTATAPLLEALRMERERAVNDGRGSTCGGGDGGWKYSCPSCGRNFL 288
            VS RS G    WGGG    YEC++CGK F KACKLARHAATHTG+KPFVC E G  XXXXXXXXXXXXXXXXXRRKAGLSTSVG+AARREAETRQRAA FVAEAAAAG+SLE P   G    RR LPLMKT TAPLLEA R+ERERAVN G GS  GGG  GWK++C +CGRNFL
Sbjct:   58 VSRRSAGDGSSWGGGSVAGYECLICGKSFSKACKLARHAATHTGEKPFVCSEAGXXXXXXXXXXXXXXXXXXXRRKAGLSTSVGDAARREAETRQRAAAFVAEAAAAGVSLEEPGAGGIGAPRRVLPLMKTTTAPLLEASRLERERAVN-GSGSG-GGGAQGWKFTCGNCGRNFL 230
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BLAST of mRNA_P-lacustris_contig918.15623.1 vs. uniprot
Match: A0A1Y1Y0K3_9FUNG (Uncharacterized protein (Fragment) n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y0K3_9FUNG)

HSP 1 Score: 51.2 bits (121), Expect = 2.590e-5
Identity = 19/36 (52.78%), Postives = 25/36 (69.44%), Query Frame = 0 
Query:  134 YECILCGKIFGKACKLARHAATHTGDKPFVCDEVGC 169
            Y C +C   F +   L+RH  THTG+KPFVC+E+GC
Sbjct:    3 YRCDICSNTFRRNEHLSRHLRTHTGEKPFVCEELGC 38
[Close]
BLAST of mRNA_P-lacustris_contig918.15623.1 vs. uniprot
Match: A0A316V6Z9_9BASI (Uncharacterized protein (Fragment) n=1 Tax=Meira miltonrushii TaxID=1280837 RepID=A0A316V6Z9_9BASI)

HSP 1 Score: 49.7 bits (117), Expect = 8.740e-5
Identity = 20/36 (55.56%), Postives = 24/36 (66.67%), Query Frame = 0 
Query:  134 YECILCGKIFGKACKLARHAATHTGDKPFVCDEVGC 169
            YEC  CGK F +   L  H  +HTG+KPFVC+E GC
Sbjct:    1 YECGWCGKRFSRPSSLKIHHHSHTGEKPFVCNEPGC 36
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig918.15623.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G3M8_ECTSI1.520e-5774.86Similar to metal response element-binding transcri... [more]
A0A1Y1Y0K3_9FUNG2.590e-552.78Uncharacterized protein (Fragment) n=1 Tax=Basidio... [more]
A0A316V6Z9_9BASI8.740e-555.56Uncharacterized protein (Fragment) n=1 Tax=Meira m... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 162..186
e-value: 6.3E-4
score: 29.0
coord: 134..156
e-value: 0.073
score: 22.2
IPR013087Zinc finger C2H2-typePFAMPF00096zf-C2H2coord: 162..186
e-value: 2.0E-4
score: 21.6
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 136..156
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 164..186
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 134..161
score: 14.69
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 162..191
score: 11.385
NoneNo IPR availableGENE3D3.30.160.60coord: 133..163
e-value: 1.2E-8
score: 36.7
NoneNo IPR availableGENE3D3.30.160.60coord: 164..190
e-value: 1.2E-9
score: 39.8
NoneNo IPR availablePANTHERPTHR24388FAMILY NOT NAMEDcoord: 31..189
NoneNo IPR availablePANTHERPTHR24388:SF46TRANSCRIPTIONAL REPRESSOR CTCFcoord: 133..289
NoneNo IPR availablePANTHERPTHR24388:SF46TRANSCRIPTIONAL REPRESSOR CTCFcoord: 31..189
NoneNo IPR availablePANTHERPTHR24388FAMILY NOT NAMEDcoord: 133..289
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 133..186

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig918contigP-lacustris_contig918:37053..38619 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig918.15623.1mRNA_P-lacustris_contig918.15623.1Pleurocladia lacustris SAG_25_93mRNAP-lacustris_contig918 33657..38652 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-lacustris_contig918.15623.1 ID=prot_P-lacustris_contig918.15623.1|Name=mRNA_P-lacustris_contig918.15623.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=302bp
MGSVGFMRRLDQAPLDCVATATQPYLASSKRNHPCEDEERERHPPRISRH
RPSSLCSLLAAAEPQPEDDEDETDEASGDSDEDSEYGEEDEDEEEDGDEA
AAPAPAAKQPRRAGVSSRSVGATGGWGGGGTDTYECILCGKIFGKACKLA
RHAATHTGDKPFVCDEVGCTKAFSTKDKLKRHVLSHARRKAGLSTSVGNA
ARREAETRQRAAQFVAEAAAAGISLEAPRVAGKETRRYLPLMKTATAPLL
EALRMERERAVNDGRGSTCGGGDGGWKYSCPSCGRNFLRQLPPQTPHQGH
P*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf