prot_P-lacustris_contig904.15517.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-lacustris_contig904.15517.1
Unique Nameprot_P-lacustris_contig904.15517.1
Typepolypeptide
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length141
Homology
BLAST of mRNA_P-lacustris_contig904.15517.1 vs. uniprot
Match: A0A6H5L203_9PHAE (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L203_9PHAE)

HSP 1 Score: 211 bits (536), Expect = 3.340e-68
Identity = 105/119 (88.24%), Postives = 109/119 (91.60%), Query Frame = 0
Query:    5 EGSGTRFEMELELMNSLASPEYLHYLAQSGYLDDRAFLRFLEYLQYFKRPQYAKFITYPHSLAMLELLVNNPPFRKEIAHVSFRDFVHQQQFLHWQFGKKAAPXXXX--SAPVSAPAQV 121
            EGSGTRFEMELELMN LASPEYLHYLAQSGYLDDRAF+RFLEYLQYFKRP+YAKFITYPHSLAML+LL+NNPPFRKEIAHVSFRDFVHQQQFLHWQFGK AAP      SAP SAPA V
Sbjct:    2 EGSGTRFEMELELMNCLASPEYLHYLAQSGYLDDRAFVRFLEYLQYFKRPEYAKFITYPHSLAMLDLLINNPPFRKEIAHVSFRDFVHQQQFLHWQFGKTAAPPRPPAASAPASAPASV 120          
BLAST of mRNA_P-lacustris_contig904.15517.1 vs. uniprot
Match: D7FV80_ECTSI (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV80_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 3.130e-43
Identity = 70/76 (92.11%), Postives = 74/76 (97.37%), Query Frame = 0
Query:    5 EGSGTRFEMELELMNSLASPEYLHYLAQSGYLDDRAFLRFLEYLQYFKRPQYAKFITYPHSLAMLELLVNNPPFRK 80
            EGSGTRFEMELELMN LASPEYLHYLAQ GYLDDRAF+RFLEYLQYFKRP+YAKFITYPHSLAML+LL+NNPPFRK
Sbjct:    2 EGSGTRFEMELELMNCLASPEYLHYLAQGGYLDDRAFIRFLEYLQYFKRPEYAKFITYPHSLAMLDLLINNPPFRK 77          
BLAST of mRNA_P-lacustris_contig904.15517.1 vs. uniprot
Match: A0A835Z5G5_9STRA (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5G5_9STRA)

HSP 1 Score: 129 bits (323), Expect = 1.300e-35
Identity = 59/95 (62.11%), Postives = 74/95 (77.89%), Query Frame = 0
Query:   10 RFEMELELMNSLASPEYLHYLAQSGYLDDRAFLRFLEYLQYFKRPQYAKFITYPHSLAMLELLVNNPPFRKEIAHVSFRDFVHQQQFLHWQFGKK 104
            RFE+ELE +  LASPEYLH+LAQ  Y DD AF+ FL+YL Y++RPQYAK++ YPH LAML+ L+N+  FR E+   SFRDFVHQQQF HWQ  ++
Sbjct:   25 RFEVELEFVQCLASPEYLHFLAQQRYFDDPAFMAFLQYLTYWRRPQYAKYLMYPHCLAMLDALLNSKRFRSELLMESFRDFVHQQQFFHWQHKRR 119          
BLAST of mRNA_P-lacustris_contig904.15517.1 vs. uniprot
Match: A0A7S3XZ41_HETAK (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZ41_HETAK)

HSP 1 Score: 125 bits (314), Expect = 6.600e-34
Identity = 58/96 (60.42%), Postives = 75/96 (78.12%), Query Frame = 0
Query:    5 EGSGTRFEMELELMNSLASPEYLHYLAQSGYLDDRAFLRFLEYLQYFKRPQYAKFITYPHSLAMLELLVNNPPFRKEIAHVSFRDFVHQQQFLHWQ 100
            +G  +RFE+ELE +  L+SPEYLHYLAQ+ Y +D AF+ FL YLQY++RP+YAKFI YPH LA +E+L  +  FRKE+A   F++FVHQQQF HWQ
Sbjct:   41 DGGHSRFEVELEFVQCLSSPEYLHYLAQNKYFEDPAFINFLHYLQYWRRPEYAKFIIYPHCLAFMEML-EDEAFRKELAKPGFKEFVHQQQFFHWQ 135          
BLAST of mRNA_P-lacustris_contig904.15517.1 vs. uniprot
Match: A0A6U6IBL1_9STRA (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6IBL1_9STRA)

HSP 1 Score: 125 bits (313), Expect = 7.220e-34
Identity = 58/92 (63.04%), Postives = 73/92 (79.35%), Query Frame = 0
Query:   10 RFEMELELMNSLASPEYLHYLAQSGYLDDRAFLRFLEYLQYFKRPQYAKFITYPHSLAMLELLVNNPPFRKEIAHVSFRDFVHQQQFLHWQF 101
            RFE+ELE +  LASP YLH+LA SG L D +FL FLEYL+Y+ RP+YA+FITYPH L  L+LL  N  FR+E+A+V+FR+FVH+QQF  WQF
Sbjct:   33 RFELELEFVQCLASPAYLHHLATSGLLSDSSFLSFLEYLRYWSRPEYARFITYPHCLYFLDLLTTNETFRREMANVAFRNFVHEQQFYSWQF 124          
BLAST of mRNA_P-lacustris_contig904.15517.1 vs. uniprot
Match: A0A7S2XM67_9STRA (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XM67_9STRA)

HSP 1 Score: 124 bits (311), Expect = 1.290e-33
Identity = 55/92 (59.78%), Postives = 74/92 (80.43%), Query Frame = 0
Query:   10 RFEMELELMNSLASPEYLHYLAQSGYLDDRAFLRFLEYLQYFKRPQYAKFITYPHSLAMLELLVNNPPFRKEIAHVSFRDFVHQQQFLHWQF 101
            RFE+ELE + SLASP Y+H+LA SG L   +F+ FL YLQY+KRP+YAK+I+YPH    L+LL++N PFR+E+A+V FR+FVH+QQF  WQ+
Sbjct:   28 RFELELEFLQSLASPAYVHHLATSGILQSPSFIAFLRYLQYWKRPEYAKYISYPHCFFFLDLLIHNEPFRREMANVGFRNFVHEQQFYSWQY 119          
BLAST of mRNA_P-lacustris_contig904.15517.1 vs. uniprot
Match: A0A7S3QJ33_9STRA (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QJ33_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.530e-30
Identity = 55/93 (59.14%), Postives = 71/93 (76.34%), Query Frame = 0
Query:   10 RFEMELELMNSLASPEYLHYLAQSGYLDDRAFLRFLEYLQ-YFKRPQYAKFITYPHSLAMLELLVNNPPFRKEIAHVSFRDFVHQQQFLHWQF 101
            RFE+ELE + SLASP YLH+LA  GY  D AFL +L YL+ Y+ RP+YAK+ITYPH L  L+L +    FRKEI+ V FR+FVH+QQF++WQ+
Sbjct:   77 RFELELEFVQSLASPAYLHHLATQGYFQDEAFLTYLRYLRSYWTRPEYAKYITYPHCLFFLDLAIEKEAFRKEISQVGFRNFVHEQQFMNWQY 169          
BLAST of mRNA_P-lacustris_contig904.15517.1 vs. uniprot
Match: A0A7S2EVA4_TRICV (Mediator of RNA polymerase II transcription subunit 31 (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EVA4_TRICV)

HSP 1 Score: 112 bits (279), Expect = 8.650e-29
Identity = 51/91 (56.04%), Postives = 69/91 (75.82%), Query Frame = 0
Query:   10 RFEMELELMNSLASPEYLHYLAQSGYLDDRAFLRFLEYLQYFKRPQYAKFITYPHSLAMLELLVNNPPFRKEIAHVSFRDFVHQQQFLHWQ 100
            RFE+ELE +  LASP Y+H+LA SG L D +FL FL YL+Y+  P+YA+F+ YPH L  L+LL  +  FR+E+A+V+FR+FVH+QQF  WQ
Sbjct:   39 RFELELEFVQCLASPAYMHHLATSGLLSDPSFLSFLRYLRYWSHPEYARFLVYPHCLYFLDLLCESEGFRREMANVAFRNFVHEQQFYGWQ 129          
BLAST of mRNA_P-lacustris_contig904.15517.1 vs. uniprot
Match: A0A176VRV6_MARPO (Mediator of RNA polymerase II transcription subunit 31 n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VRV6_MARPO)

HSP 1 Score: 110 bits (274), Expect = 7.220e-28
Identity = 57/125 (45.60%), Postives = 80/125 (64.00%), Query Frame = 0
Query:    1 MMDTEGSGTRFEMELELMNSLASPEYLHYLAQSGYLDDRAFLRFLEYLQYFKRPQYAKFITYPHSLAMLELLVNNPPFRKEIAHVSFRDFVHQQQFLHWQFGKKAAPXXXXSAPV-SAPAQVPPA 124
            + +T+G   RFE+ELE +  LA+P Y+HYLAQ+ Y DD AF+ +L+YLQY++RP+YAKFI YPH+L  LELL  +  FR  +AH   ++  H+QQF  W+  +          P+   PA  PPA
Sbjct:   13 LKETDGGRQRFELELEFVQCLANPTYIHYLAQNRYFDDEAFVGYLKYLQYWQRPEYAKFIVYPHTLFFLELL-QSAQFRTAMAHPVNKEVAHRQQFYFWKHHRNNRLKHILPRPIPEEPAPPPPA 136          
BLAST of mRNA_P-lacustris_contig904.15517.1 vs. uniprot
Match: V4LQB5_EUTSA (Mediator of RNA polymerase II transcription subunit 31 n=2 Tax=Eutrema salsugineum TaxID=72664 RepID=V4LQB5_EUTSA)

HSP 1 Score: 107 bits (268), Expect = 1.140e-26
Identity = 50/98 (51.02%), Postives = 70/98 (71.43%), Query Frame = 0
Query:    3 DTEGSGTRFEMELELMNSLASPEYLHYLAQSGYLDDRAFLRFLEYLQYFKRPQYAKFITYPHSLAMLELLVNNPPFRKEIAHVSFRDFVHQQQFLHWQ 100
            D +G   RF +ELE +  LA+P Y+HYLAQ+ Y +D AF+ +L+YLQY++RP+Y KFI YPH L  LELL  NP FR  +AH + ++  H+QQF +W+
Sbjct:   23 DPDGGRQRFLLELEFIQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELL-QNPNFRSAMAHPANKELAHRQQFYYWK 119          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig904.15517.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L203_9PHAE3.340e-6888.24Mediator of RNA polymerase II transcription subuni... [more]
D7FV80_ECTSI3.130e-4392.11Mediator of RNA polymerase II transcription subuni... [more]
A0A835Z5G5_9STRA1.300e-3562.11Mediator of RNA polymerase II transcription subuni... [more]
A0A7S3XZ41_HETAK6.600e-3460.42Mediator of RNA polymerase II transcription subuni... [more]
A0A6U6IBL1_9STRA7.220e-3463.04Mediator of RNA polymerase II transcription subuni... [more]
A0A7S2XM67_9STRA1.290e-3359.78Mediator of RNA polymerase II transcription subuni... [more]
A0A7S3QJ33_9STRA1.530e-3059.14Mediator of RNA polymerase II transcription subuni... [more]
A0A7S2EVA4_TRICV8.650e-2956.04Mediator of RNA polymerase II transcription subuni... [more]
A0A176VRV6_MARPO7.220e-2845.60Mediator of RNA polymerase II transcription subuni... [more]
V4LQB5_EUTSA1.140e-2651.02Mediator of RNA polymerase II transcription subuni... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008831Mediator complex, subunit Med31PFAMPF05669Med31coord: 9..100
e-value: 3.6E-32
score: 110.2
IPR008831Mediator complex, subunit Med31PANTHERPTHR13186MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT SOH1coord: 7..123
IPR038089Mediator complex, subunit Med31 domain superfamilyGENE3D1.10.10.1340coord: 2..98
e-value: 1.4E-27
score: 97.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig904contigP-lacustris_contig904:16739..20775 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig904.15517.1mRNA_P-lacustris_contig904.15517.1Pleurocladia lacustris SAG_25_93mRNAP-lacustris_contig904 16014..20778 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-lacustris_contig904.15517.1 ID=prot_P-lacustris_contig904.15517.1|Name=mRNA_P-lacustris_contig904.15517.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=141bp
MMDTEGSGTRFEMELELMNSLASPEYLHYLAQSGYLDDRAFLRFLEYLQY
FKRPQYAKFITYPHSLAMLELLVNNPPFRKEIAHVSFRDFVHQQQFLHWQ
FGKKAAPPPPPSAPVSAPAQVPPAKEQQAVQQRPKNVFST*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008831Mediator_Med31
IPR038089Med31_sf