prot_P-lacustris_contig89.15370.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-lacustris_contig89.15370.1
Unique Nameprot_P-lacustris_contig89.15370.1
Typepolypeptide
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length116
Homology
BLAST of mRNA_P-lacustris_contig89.15370.1 vs. uniprot
Match: D8LL81_ECTSI (DNA-directed RNA polymerase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL81_ECTSI)

HSP 1 Score: 222 bits (566), Expect = 2.110e-73
Identity = 103/115 (89.57%), Postives = 109/115 (94.78%), Query Frame = 0
Query:    1 MPWPFCPSCGTVLDPPESGDILCDYCGLRTSYESFGEVEVVTRSQERPLPEWVVQMQRHGEKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKSCKYKYAVNN 115
            MPWPFCPSCG+VLDPPESGDILCD+C LR SYESFGEVEVVTRSQ R  PEW+VQ+QR GEKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSK+CK+KYAVNN
Sbjct:    1 MPWPFCPSCGSVLDPPESGDILCDHCHLRISYESFGEVEVVTRSQNRAEPEWLVQIQRKGEKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKACKHKYAVNN 115          
BLAST of mRNA_P-lacustris_contig89.15370.1 vs. uniprot
Match: A0A836CG05_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG05_9STRA)

HSP 1 Score: 165 bits (418), Expect = 7.770e-51
Identity = 71/115 (61.74%), Postives = 94/115 (81.74%), Query Frame = 0
Query:    1 MPWPFCPSCGTVLDPPESGDILCDYCGLRTSYESFGEVEVVTRSQERPLPEWVVQMQRHGEKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKSCKYKYAVNN 115
            M WPFCP+CG VL  PE GD+ C  C    ++ESFG+VE++T+S  RPLP WV +++  G +++ +RATV+E CPKCGHP+MEFYTMQLRSADEGQTVFYECL+K+C++K++VNN
Sbjct:    1 MTWPFCPTCGAVLALPEYGDVECGNCKAEMTFESFGKVELITQSAPRPLPRWVEELENKGIREKQKRATVDEQCPKCGHPEMEFYTMQLRSADEGQTVFYECLNKNCQHKFSVNN 115          
BLAST of mRNA_P-lacustris_contig89.15370.1 vs. uniprot
Match: A0A2D4BKP7_PYTIN (DNA-directed RNA polymerase subunit n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BKP7_PYTIN)

HSP 1 Score: 135 bits (340), Expect = 7.250e-39
Identity = 62/111 (55.86%), Postives = 83/111 (74.77%), Query Frame = 0
Query:    5 FCPSCGTVLDPPESGDILCDYCGLRTSYESFGEVEVVTRSQERPLPEWVVQMQRHGEKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKSCKYKYAVNN 115
            FCP CGT+LD P++ +I+C  C  R +YE+   + VVT S+E+P+P+W+   Q   E +   RATVEE CPKCG+P+M++YTMQLRSADEGQTVFYEC  K C +K++VNN
Sbjct:   14 FCPHCGTILDHPDTNNIVCSSCEYRCTYENLPSLSVVTCSEEKPVPKWLKTEQSVNEVKGPARATVEETCPKCGNPEMDYYTMQLRSADEGQTVFYEC--KKCGHKFSVNN 122          
BLAST of mRNA_P-lacustris_contig89.15370.1 vs. uniprot
Match: M4BZT8_HYAAE (DNA-directed RNA polymerase subunit n=22 Tax=Peronosporaceae TaxID=4777 RepID=M4BZT8_HYAAE)

HSP 1 Score: 129 bits (323), Expect = 3.050e-36
Identity = 58/111 (52.25%), Postives = 79/111 (71.17%), Query Frame = 0
Query:    5 FCPSCGTVLDPPESGDILCDYCGLRTSYESFGEVEVVTRSQERPLPEWVVQMQRHGEKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKSCKYKYAVNN 115
            FCP CGT+LD P++  I+C  C  R  Y+    + V+TRS+++P P+W+   +   E     RATVEE CPKCG+P+M++YT+QLRSADEGQTVFYEC  K C +K++VNN
Sbjct:   17 FCPHCGTILDHPDTNSIVCSACEYRCRYQDLPSLTVITRSEDKPTPKWLDAEKVMSEVTGPARATVEETCPKCGNPEMDYYTLQLRSADEGQTVFYEC--KKCGHKFSVNN 125          
BLAST of mRNA_P-lacustris_contig89.15370.1 vs. uniprot
Match: A0A024TQD9_9STRA (DNA-directed RNA polymerase subunit n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TQD9_9STRA)

HSP 1 Score: 128 bits (322), Expect = 4.210e-36
Identity = 60/110 (54.55%), Postives = 75/110 (68.18%), Query Frame = 0
Query:    5 FCPSCGTVLDPPESGDILCDYCGLRTSYESFGEVEVVTRSQERPLPEWVVQMQRHGEKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKSCKYKYAVN 114
            FC  CG++LD PE+  I+C  CG    Y     +  +T SQ+RP P+WV +  +  E     RATVEE CPKCGHP+MEFYT+QLRSADEGQTVFYEC  K C ++Y+VN
Sbjct:   16 FCKHCGSILDLPETNSIVCSSCGFTCRYTDLPSLTTITYSQDRPEPKWVKENVQSQEVTGPSRATVEETCPKCGHPEMEFYTLQLRSADEGQTVFYEC--KKCGHRYSVN 123          
BLAST of mRNA_P-lacustris_contig89.15370.1 vs. uniprot
Match: A0A6G0WT35_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WT35_9STRA)

HSP 1 Score: 128 bits (322), Expect = 4.210e-36
Identity = 63/110 (57.27%), Postives = 75/110 (68.18%), Query Frame = 0
Query:    5 FCPSCGTVLDPPESGDILCDYCGLRTSYESFGEVEVVTRSQERPLPEWVVQMQRHGEKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKSCKYKYAVN 114
            FCP CGT+LD PE+  I+C  CG    Y     +  VT SQ+RP P+WV Q  +        RATVEE CPKCG+P+MEFYTMQLRSADEGQTVFYEC  K C ++Y+VN
Sbjct:   16 FCPHCGTILDLPETNSIVCSACGFTCRYTDLPSLCTVTFSQDRPEPKWVKQDIQSQNVTGPARATVEETCPKCGNPQMEFYTMQLRSADEGQTVFYEC--KKCGHRYSVN 123          
BLAST of mRNA_P-lacustris_contig89.15370.1 vs. uniprot
Match: A0A0N7L402_PLAHL (DNA-directed RNA polymerase subunit n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L402_PLAHL)

HSP 1 Score: 128 bits (321), Expect = 6.150e-36
Identity = 59/111 (53.15%), Postives = 79/111 (71.17%), Query Frame = 0
Query:    5 FCPSCGTVLDPPESGDILCDYCGLRTSYESFGEVEVVTRSQERPLPEWVVQMQRHGEKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKSCKYKYAVNN 115
            FCP CGT+LD P++ +I+C  C  R  Y+    + VVT+S++RPLP+W+       E     RATVEE CPKC +P+M++YT+QLRSADEGQTVFYEC  K C +K++VNN
Sbjct:   17 FCPHCGTILDHPDTNNIVCSACEYRCRYQDLPSLSVVTQSEDRPLPKWLDAKVGMSEVTGPARATVEETCPKCENPEMDYYTLQLRSADEGQTVFYEC--KKCGHKFSVNN 125          
BLAST of mRNA_P-lacustris_contig89.15370.1 vs. uniprot
Match: A0A485LF44_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LF44_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.200e-35
Identity = 62/110 (56.36%), Postives = 76/110 (69.09%), Query Frame = 0
Query:    5 FCPSCGTVLDPPESGDILCDYCGLRTSYESFGEVEVVTRSQERPLPEWVVQMQRHGEKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKSCKYKYAVN 114
            FCP CGT+LD PE+  I+C  CG    Y     +  VT S++RP P+WV +  +  E     RATVEE CPKCG+P+MEFYTMQLRSADEGQTVFYEC  K C ++Y+VN
Sbjct:   16 FCPHCGTILDLPETNAIVCSSCGYTCRYTDLPSLCTVTFSEDRPEPKWVKEEIQSQEVTGPARATVEETCPKCGNPQMEFYTMQLRSADEGQTVFYEC--KKCGHRYSVN 123          
BLAST of mRNA_P-lacustris_contig89.15370.1 vs. uniprot
Match: A0A067CLZ5_SAPPC (DNA-directed RNA polymerase subunit n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CLZ5_SAPPC)

HSP 1 Score: 125 bits (313), Expect = 9.820e-35
Identity = 61/110 (55.45%), Postives = 75/110 (68.18%), Query Frame = 0
Query:    5 FCPSCGTVLDPPESGDILCDYCGLRTSYESFGEVEVVTRSQERPLPEWVVQMQRHGEKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKSCKYKYAVN 114
            FCP CGT+LD PE+ +I+C  CG    Y+    +  VT S++RP P+WV       E     RATVEE CPKC +P+MEFYTMQLRSADEGQTVFYEC  K C ++Y+VN
Sbjct:   16 FCPHCGTILDLPETNNIVCSSCGYTCQYQDLPTLCTVTFSEDRPEPKWVKNAIVSQEVTGPARATVEEPCPKCNNPQMEFYTMQLRSADEGQTVFYEC--KKCGHRYSVN 123          
BLAST of mRNA_P-lacustris_contig89.15370.1 vs. uniprot
Match: A0A484EDY4_BRELC (DNA-directed RNA polymerase subunit n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EDY4_BRELC)

HSP 1 Score: 124 bits (311), Expect = 2.040e-34
Identity = 60/111 (54.05%), Postives = 76/111 (68.47%), Query Frame = 0
Query:    5 FCPSCGTVLDPPESGDILCDYCGLRTSYESFGEVEVVTRSQERPLPEWVVQMQRHGEKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKSCKYKYAVNN 115
            FCP CGT+LD P++ +I+C  C  R  YE F  +  +T S++RP P+W+       E     RATVEE CPKCG+ +MEFYT+QLRSADEGQTVFYEC  K C +K +VNN
Sbjct:   17 FCPHCGTILDHPDTNNIVCSACEHRCRYEDFPSLTFITYSEDRPKPKWLDAEVGMSEVTGPARATVEETCPKCGNREMEFYTLQLRSADEGQTVFYEC--KKCGHKSSVNN 125          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig89.15370.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL81_ECTSI2.110e-7389.57DNA-directed RNA polymerase subunit n=2 Tax=Ectoca... [more]
A0A836CG05_9STRA7.770e-5161.74DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
A0A2D4BKP7_PYTIN7.250e-3955.86DNA-directed RNA polymerase subunit n=2 Tax=Pythiu... [more]
M4BZT8_HYAAE3.050e-3652.25DNA-directed RNA polymerase subunit n=22 Tax=Peron... [more]
A0A024TQD9_9STRA4.210e-3654.55DNA-directed RNA polymerase subunit n=2 Tax=Aphano... [more]
A0A6G0WT35_9STRA4.210e-3657.27DNA-directed RNA polymerase subunit n=1 Tax=Aphano... [more]
A0A0N7L402_PLAHL6.150e-3653.15DNA-directed RNA polymerase subunit n=1 Tax=Plasmo... [more]
A0A485LF44_9STRA1.200e-3556.36DNA-directed RNA polymerase subunit n=1 Tax=Aphano... [more]
A0A067CLZ5_SAPPC9.820e-3555.45DNA-directed RNA polymerase subunit n=4 Tax=Saprol... [more]
A0A484EDY4_BRELC2.040e-3454.05DNA-directed RNA polymerase subunit n=1 Tax=Bremia... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001222Zinc finger, TFIIS-typeSMARTSM00440Cys4_2coord: 72..113
e-value: 4.9E-13
score: 59.3
IPR001222Zinc finger, TFIIS-typePFAMPF01096TFIIS_Ccoord: 73..111
e-value: 1.4E-15
score: 56.9
IPR001222Zinc finger, TFIIS-typePROSITEPS51133ZF_TFIIS_2coord: 70..112
score: 12.934
NoneNo IPR availableGENE3D2.20.25.10coord: 57..113
e-value: 5.2E-18
score: 66.1
NoneNo IPR availablePANTHERPTHR11239DNA-DIRECTED RNA POLYMERASEcoord: 5..115
NoneNo IPR availablePANTHERPTHR11239:SF14DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA12coord: 5..115
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 64..111
IPR012164DNA-directed RNA polymerase subunit/transcription factor SPIRSFPIRSF005586RNApol_RpoMcoord: 3..115
e-value: 1.8E-23
score: 81.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig89contigP-lacustris_contig89:243908..247702 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig89.15370.1mRNA_P-lacustris_contig89.15370.1Pleurocladia lacustris SAG_25_93mRNAP-lacustris_contig89 243579..248150 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-lacustris_contig89.15370.1 ID=prot_P-lacustris_contig89.15370.1|Name=mRNA_P-lacustris_contig89.15370.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=116bp
MPWPFCPSCGTVLDPPESGDILCDYCGLRTSYESFGEVEVVTRSQERPLP
EWVVQMQRHGEKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFY
ECLSKSCKYKYAVNN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001222Znf_TFIIS
IPR012164Rpa12/Rpb9/Rpc10/TFS