prot_P-lacustris_contig88.15265.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-lacustris_contig88.15265.1
Unique Nameprot_P-lacustris_contig88.15265.1
Typepolypeptide
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length405
Homology
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BLAST of mRNA_P-lacustris_contig88.15265.1 vs. uniprot
Match: D7FS81_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS81_ECTSI)

HSP 1 Score: 425 bits (1093), Expect = 1.910e-144
Identity = 265/420 (63.10%), Postives = 302/420 (71.90%), Query Frame = 0 
Query:    1 MARPTKERVFIHYVLGKMLLLFFLCHPGTLATCDGQAYLRNRYANRDLVKTETEIEDHRRHYKPRDASEFTMRVGVPDEILRSNGDVE-NYTPDWAPSLEELFQNTVMSWLRKGSTMATIQRQPATAT------------VSYIPTXXXXXXXXXXXXXXXXXXXFVSSPYARCKMTGV-LRGNAAGELSARQRWMSPLADVGSNPRDTRRLLAAARASCDGCSGCRRRRRPRSTSGCNSSGSPQMLLPRFRGRGFPLRRGIFGGSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGNSAETLEGPELQVATS--TSRRGSPPSMISSFLGGAVEAYDSAVGFVGCALVTSPLGKRYLSGASDGYNSVSTIRRTGGGPADMSSGGAYDLVGFSNIDPFEASGRGRGAASKRFFG 404
            MA PTKERVFIHYVLGKML+LFFLCHPGTLATCDGQAYLRNRYANRDLVKTE+E+EDHRRHYK RD SEF MRVGVP+EIL+S   V+ NYTPDWAP+LE+ F +TV++WLRKG + A  Q +PAT T             +    XXXXXXX            FV +P+ R ++TGV  R + +G L+ARQRW+SPLA+VGSNPR            C  CSGCRR R  R      S+G+PQMLL RFRGRGFPLRRGIFGG+     XXXXXXXXXXXXXXX               + NSAETLEGPE  +  +  +   GS  S++S+FLGGA +AYDSA+ FVGCALVTSPLGKRYLSGASDGYN+VSTIRRTGGGPADM+SG AYDLVGFSNIDPFEASGRG G    RF G
Sbjct:    1 MAGPTKERVFIHYVLGKMLMLFFLCHPGTLATCDGQAYLRNRYANRDLVKTESELEDHRRHYKRRDVSEFAMRVGVPEEILQSKAGVDDNYTPDWAPTLEQRFHSTVVAWLRKGGSTAD-QDKPATTTGATHTNAGSTANTASXXXXXXXXXXMAAVRVATRGMAFVPTPHTRGRVTGVHRRASTSGALTARQRWVSPLAEVGSNPR-----------RCSECSGCRRLRSARR----GSAGNPQMLLSRFRGRGFPLRRGIFGGASEADGXXXXXXXXXXXXXXXEDCVQDEIRDQAAATTYNSAETLEGPERPLTGNGDSGGGGSRSSVLSTFLGGAADAYDSALDFVGCALVTSPLGKRYLSGASDGYNTVSTIRRTGGGPADMNSGSAYDLVGFSNIDPFEASGRGGGG--NRFLG 402
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BLAST of mRNA_P-lacustris_contig88.15265.1 vs. uniprot
Match: A0A836CPJ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPJ6_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.700e-7
Identity = 29/56 (51.79%), Postives = 39/56 (69.64%), Query Frame = 0 
Query:    2 ARPTKERVFIHYVLGKM---LLLFFLCHPGTLATCDGQAYLRNRYANRDLVKTETE 54
            A   + R+F HYVLG++    LLFFLCHPGT+AT +G+ YL +RY NR+L    +E
Sbjct:   13 AGRVRRRIFAHYVLGRLGFLALLFFLCHPGTMATFNGKDYLTHRYPNRELAVAASE 68
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig88.15265.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FS81_ECTSI1.910e-14463.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CPJ6_9STRA1.700e-751.79Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 19..30
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 36..404
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..35
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 31..35
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..31
score: 0.767
NoneNo IPR availableTMHMMTMhelixcoord: 9..31

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig88contigP-lacustris_contig88:28363..32551 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig88.15265.1mRNA_P-lacustris_contig88.15265.1Pleurocladia lacustris SAG_25_93mRNAP-lacustris_contig88 28208..35198 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-lacustris_contig88.15265.1 ID=prot_P-lacustris_contig88.15265.1|Name=mRNA_P-lacustris_contig88.15265.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=405bp
MARPTKERVFIHYVLGKMLLLFFLCHPGTLATCDGQAYLRNRYANRDLVK
TETEIEDHRRHYKPRDASEFTMRVGVPDEILRSNGDVENYTPDWAPSLEE
LFQNTVMSWLRKGSTMATIQRQPATATVSYIPTATASTAPTAAAQVGTPS
MAFVSSPYARCKMTGVLRGNAAGELSARQRWMSPLADVGSNPRDTRRLLA
AARASCDGCSGCRRRRRPRSTSGCNSSGSPQMLLPRFRGRGFPLRRGIFG
GSEEAGSSSKDSSSSGGGADYIQDQNQDEMAAAVTTTSGNSAETLEGPEL
QVATSTSRRGSPPSMISSFLGGAVEAYDSAVGFVGCALVTSPLGKRYLSG
ASDGYNSVSTIRRTGGGPADMSSGGAYDLVGFSNIDPFEASGRGRGAASK
RFFG*
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