prot_P-lacustris_contig87.15183.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-lacustris_contig87.15183.1
Unique Nameprot_P-lacustris_contig87.15183.1
Typepolypeptide
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length134
Homology
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BLAST of mRNA_P-lacustris_contig87.15183.1 vs. uniprot
Match: D7FNQ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNQ8_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 4.480e-28
Identity = 79/138 (57.25%), Postives = 89/138 (64.49%), Query Frame = 0 
Query:    1 MDGVMAVERAQLASLLLVMSVVAAAPALVATVLKALFSVRLRSRLVHEDCKRFAGVFFVLATKAISVPAACGGGWLCERRVHVLRAAADDSDSIDRDH------HDQETALERGLDKQTRGDAKLREGKDLQRPRAGG 132
            MDG + VER  LA+LLLVM   AA PA++A VLK  FSVRLRS LV +D +RF GVFF LATKA+SVPA CGGG LCERRVH L+   DD+ S D          D E ALERG   +T G     EG DLQR   GG
Sbjct:    1 MDGAIPVERTHLAALLLVMFAAAAVPAVLAAVLKMFFSVRLRSSLVRDDRRRFVGVFFFLATKAVSVPAFCGGGRLCERRVHALK---DDATSTDXXXXXXXXXRDNEAALERGGGGKTIGGDAQEEG-DLQRAPLGG 134
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig87.15183.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNQ8_ECTSI4.480e-2857.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 34..52
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 77..133
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..33
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 53..76
NoneNo IPR availableTMHMMTMhelixcoord: 12..34
NoneNo IPR availableTMHMMTMhelixcoord: 54..76

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig87contigP-lacustris_contig87:99222..100380 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig87.15183.1mRNA_P-lacustris_contig87.15183.1Pleurocladia lacustris SAG_25_93mRNAP-lacustris_contig87 99222..102256 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-lacustris_contig87.15183.1 ID=prot_P-lacustris_contig87.15183.1|Name=mRNA_P-lacustris_contig87.15183.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=134bp
MDGVMAVERAQLASLLLVMSVVAAAPALVATVLKALFSVRLRSRLVHEDC
KRFAGVFFVLATKAISVPAACGGGWLCERRVHVLRAAADDSDSIDRDHHD
QETALERGLDKQTRGDAKLREGKDLQRPRAGGV*
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