prot_P-lacustris_contig1239.1739.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-lacustris_contig1239.1739.1
Unique Nameprot_P-lacustris_contig1239.1739.1
Typepolypeptide
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length118
Homology
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BLAST of mRNA_P-lacustris_contig1239.1739.1 vs. uniprot
Match: A0A6H5K9M4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M4_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 7.400e-26
Identity = 49/108 (45.37%), Postives = 61/108 (56.48%), Query Frame = 0 
Query:    1 MYSVENPAPNMPQRSNMPDCYGFVKNGCCRFLHNCRFHHPYDRVGKPIQDPIGGGQKMQRGPFPHNXXXXXXXXXXXXXXXXXXXXXXXXSDGVVSIQERAPCDVYLN 108
            +YSVE P PNMPQR NMP+C+GFVKNGCCRFLHNCR+HHPYDR+G   QD  G            +                         D ++ +Q+RAPCD++LN
Sbjct:  171 LYSVERPVPNMPQRPNMPECHGFVKNGCCRFLHNCRYHHPYDRLGMATQDSAGXXXXXXXXXXXXSHENVGGGSGV---------------DAIIGVQDRAPCDMFLN 263
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1239.1739.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K9M4_9PHAE7.400e-2645.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 14..42
score: 10.465

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1239contigP-lacustris_contig1239:18272..19559 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1239.1739.1mRNA_P-lacustris_contig1239.1739.1Pleurocladia lacustris SAG_25_93mRNAP-lacustris_contig1239 8135..19559 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-lacustris_contig1239.1739.1 ID=prot_P-lacustris_contig1239.1739.1|Name=mRNA_P-lacustris_contig1239.1739.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=118bp
MYSVENPAPNMPQRSNMPDCYGFVKNGCCRFLHNCRFHHPYDRVGKPIQD
PIGGGQKMQRGPFPHNNSSSSNNNNNNNNNNNSGGGVGGGSDGVVSIQER
APCDVYLNVSLTCSIRI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH