prot_P-lacustris_contig1082.695.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-lacustris_contig1082.695.1
Unique Nameprot_P-lacustris_contig1082.695.1
Typepolypeptide
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length189
Homology
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BLAST of mRNA_P-lacustris_contig1082.695.1 vs. uniprot
Match: D8LD01_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD01_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 3.200e-46
Identity = 108/200 (54.00%), Postives = 120/200 (60.00%), Query Frame = 0 
Query:    1 MMRIPFALAVLTAGRLFGFANAFRFYPCPTSISGK-----AVTEPRSYISVGARSGGGRSRSCNGRRDMRLGLHGEALAVGA-VIAGAATIAAGRGLWTLTDVFKLADYRTAKQEPYLAPGLHYSGHDLRLDDKLLSTRRRLLPASETP---LE----RGLSDAGPGVEMGWREEVELASQLPDDGVGVGASGVADRENG 187
            M R P  LA L AG++FG ANAF  YP PT  S       A T P S +   A  G  R RSC GRR+++L L  EALAVGA VIAGAA I AGRGL TL   FKLADYRT             SGHDLRLD+KL S RRRL P+SET    LE    RG S+   GVE  WREE+ LASQLPDD V  G SG  +R+ G
Sbjct:    1 MTRKPLVLAALAAGQVFGVANAFHVYPPPTLSSRGGHVEIAPTRPFSCLPA-ASCGAHRRRSCCGRRELQLALESEALAVGAAVIAGAAIIGAGRGLSTLAGAFKLADYRTT------------SGHDLRLDEKLGSKRRRLDPSSETTSGSLESTGGRGASETALGVETDWREEIRLASQLPDDSVVFGGSGGMERDGG 187
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1082.695.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LD01_ECTSI3.200e-4654.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..17
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..188
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..22
score: 0.681
NoneNo IPR availableTMHMMTMhelixcoord: 66..88

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1082contigP-lacustris_contig1082:11148..18737 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1082.695.1mRNA_P-lacustris_contig1082.695.1Pleurocladia lacustris SAG_25_93mRNAP-lacustris_contig1082 10590..18737 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-lacustris_contig1082.695.1 ID=prot_P-lacustris_contig1082.695.1|Name=mRNA_P-lacustris_contig1082.695.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=189bp
MMRIPFALAVLTAGRLFGFANAFRFYPCPTSISGKAVTEPRSYISVGARS
GGGRSRSCNGRRDMRLGLHGEALAVGAVIAGAATIAAGRGLWTLTDVFKL
ADYRTAKQEPYLAPGLHYSGHDLRLDDKLLSTRRRLLPASETPLERGLSD
AGPGVEMGWREEVELASQLPDDGVGVGASGVADRENGN*
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