prot_P-lacustris_contig1071.635.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-lacustris_contig1071.635.1
Unique Nameprot_P-lacustris_contig1071.635.1
Typepolypeptide
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length127
Homology
BLAST of mRNA_P-lacustris_contig1071.635.1 vs. uniprot
Match: D8LML1_ECTSI (Heterogeneous nuclear ribonucleoprotein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LML1_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 2.570e-31
Identity = 68/110 (61.82%), Postives = 76/110 (69.09%), Query Frame = 0
Query:    1 MSMPVVHTGVIRMRGLPFSATKQDVMNFFQGTQGMPVTEDTIQFVVRGDGRVTGEAFVSFGSPSESEEREPHGHPLRGAFCFHSGGNSATHEQDLRGRFPEPLLRDAGET 110
            M+MPVVHTGVIRMRGLPFSATKQDV+NFFQG   MPVTEDTIQFVVRGDGRVTGEAFVSF SP+ESE           A    +G +  T   +L    PE ++R    T
Sbjct:  210 MAMPVVHTGVIRMRGLPFSATKQDVLNFFQG---MPVTEDTIQFVVRGDGRVTGEAFVSFSSPAESE-----------AAMSRNGNHMGTRYVELFASTPEEIVRHMNRT 305          
BLAST of mRNA_P-lacustris_contig1071.635.1 vs. uniprot
Match: A0A836CJZ5_9STRA (RRM domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJZ5_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.420e-19
Identity = 44/61 (72.13%), Postives = 53/61 (86.89%), Query Frame = 0
Query:    7 HTGVIRMRGLPFSATKQDVMNFFQGTQGMPVTEDTIQFVVRGDGRVTGEAFVSFGSPSESE 67
            HTGVIRMRGLPFSATK DV+NFFQG   + V ++++QFVVRGDGRVTGEAFV+  SP+E+E
Sbjct:  135 HTGVIRMRGLPFSATKADVVNFFQG---LNVLDESVQFVVRGDGRVTGEAFVTLSSPAEAE 192          
BLAST of mRNA_P-lacustris_contig1071.635.1 vs. uniprot
Match: A0A7S2V6E7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6E7_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.330e-15
Identity = 35/61 (57.38%), Postives = 49/61 (80.33%), Query Frame = 0
Query:    7 HTGVIRMRGLPFSATKQDVMNFFQGTQGMPVTEDTIQFVVRGDGRVTGEAFVSFGSPSESE 67
            HTG++R+RGLPFSA+K DV++FF G +   + ED+I+FVVR DGRVTGE++V F SP  ++
Sbjct:   23 HTGILRLRGLPFSASKADVLHFFDGYE---IVEDSIEFVVRADGRVTGESYVQFTSPDAAK 80          
BLAST of mRNA_P-lacustris_contig1071.635.1 vs. uniprot
Match: A0A7S2A1L2_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A1L2_TRICV)

HSP 1 Score: 69.7 bits (169), Expect = 5.250e-13
Identity = 35/62 (56.45%), Postives = 47/62 (75.81%), Query Frame = 0
Query:    7 HTGVIRMRGLPFSATKQDVMNFFQGTQGMPVTEDTIQFVVRGDGRVTGEAFVSFGSPSESEE 68
            HTG +RMRGLPFSA+K+DV  FF+G +  PV + +I   VR DGR TGE +V+FGSP +S++
Sbjct:   12 HTGYLRMRGLPFSASKEDVQEFFKGHK--PV-DGSICLTVRSDGRATGEGYVAFGSPEDSKK 70          
BLAST of mRNA_P-lacustris_contig1071.635.1 vs. uniprot
Match: A0A1J3H8S3_NOCCA (Heterogeneous nuclear ribonucleoprotein H3 (Fragment) n=3 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3H8S3_NOCCA)

HSP 1 Score: 69.7 bits (169), Expect = 8.180e-13
Identity = 33/60 (55.00%), Postives = 46/60 (76.67%), Query Frame = 0
Query:    7 HTGVIRMRGLPFSATKQDVMNFFQGTQGMPVTEDTIQFVVRGDGRVTGEAFVSFGSPSES 66
            HTGV+R+RGLPFSA K+D+++FF+  +   ++ED++   V G+GR TGEAFV FGS  ES
Sbjct:   32 HTGVLRLRGLPFSAGKEDIIDFFKDFE---LSEDSVHVTVNGEGRPTGEAFVEFGSAHES 88          
BLAST of mRNA_P-lacustris_contig1071.635.1 vs. uniprot
Match: UPI0006AB33F4 (heterogeneous nuclear ribonucleoprotein H3-like n=1 Tax=Brassica napus TaxID=3708 RepID=UPI0006AB33F4)

HSP 1 Score: 68.9 bits (167), Expect = 1.100e-12
Identity = 32/60 (53.33%), Postives = 45/60 (75.00%), Query Frame = 0
Query:    7 HTGVIRMRGLPFSATKQDVMNFFQGTQGMPVTEDTIQFVVRGDGRVTGEAFVSFGSPSES 66
            HTG++R+RGLPFSA K+D+++FF+      ++ED+I   V G+GR TG+AFV FGS  ES
Sbjct:   16 HTGILRLRGLPFSAGKEDILDFFKD---FDLSEDSIHVTVNGEGRPTGDAFVEFGSAEES 72          
BLAST of mRNA_P-lacustris_contig1071.635.1 vs. uniprot
Match: A0A7S3BYF2_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BYF2_9VIRI)

HSP 1 Score: 72.0 bits (175), Expect = 1.390e-12
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 0
Query:    7 HTGVIRMRGLPFSATKQDVMNFFQGTQGMPVTEDTIQFVVRGDGRVTGEAFVSFGSPSESE 67
            HTGVI+MRGLPFS TKQ+++ FF    G P+TED++   V+ DGR TGEAFV F  P +S+
Sbjct:  150 HTGVIKMRGLPFSTTKQEILQFFGEFAG-PLTEDSVFIRVQQDGRATGEAFVEFPGPEQSQ 209          
BLAST of mRNA_P-lacustris_contig1071.635.1 vs. uniprot
Match: A0A0K9RJE8_SPIOL (Uncharacterized protein n=4 Tax=Chenopodiaceae TaxID=1804623 RepID=A0A0K9RJE8_SPIOL)

HSP 1 Score: 72.8 bits (177), Expect = 1.590e-12
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 0
Query:    1 MSMPVVHTGVIRMRGLPFSATKQDVMNFFQGTQGMPVTEDTIQFVVRGDGRVTGEAFVSFGSPSESE 67
            ++ PV HTGV+++RGLPFSATK++++ FF G     +TED++      DGR TGEAFV F  P +SE
Sbjct:  284 LNEPVKHTGVLKLRGLPFSATKEEIIEFFNG---FVLTEDSVHITSMPDGRPTGEAFVEFAGPEDSE 347          
BLAST of mRNA_P-lacustris_contig1071.635.1 vs. uniprot
Match: A0A6U4CVK5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4CVK5_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.990e-12
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = 0
Query:    8 TGVIRMRGLPFSATKQDVMNFFQGTQGMPVTEDTIQFVVRGDGRVTGEAFVSFGSPSESEE 68
            T V+RMRGLPFSA++ DV+ FF+  +   V ED+I+F  R DGRVTGEA+V F SP+ + E
Sbjct:   14 TTVLRMRGLPFSASRSDVVGFFRDLE---VIEDSIKFATRSDGRVTGEAYVEFDSPATAAE 71          
BLAST of mRNA_P-lacustris_contig1071.635.1 vs. uniprot
Match: A0A7C8YU07_OPUST (Uncharacterized protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8YU07_OPUST)

HSP 1 Score: 72.4 bits (176), Expect = 2.150e-12
Identity = 33/64 (51.56%), Postives = 45/64 (70.31%), Query Frame = 0
Query:    4 PVVHTGVIRMRGLPFSATKQDVMNFFQGTQGMPVTEDTIQFVVRGDGRVTGEAFVSFGSPSESE 67
            PV HTG++R+RGLPFSAT++D+M FF G     +++D++      DGR TGEAFV F S  +SE
Sbjct:  282 PVKHTGILRLRGLPFSATEEDIMEFFNG---FVLSKDSVHITFNADGRATGEAFVEFASAEDSE 342          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1071.635.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LML1_ECTSI2.570e-3161.82Heterogeneous nuclear ribonucleoprotein, putative ... [more]
A0A836CJZ5_9STRA1.420e-1972.13RRM domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A7S2V6E7_9STRA1.330e-1557.38Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2A1L2_TRICV5.250e-1356.45Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A1J3H8S3_NOCCA8.180e-1355.00Heterogeneous nuclear ribonucleoprotein H3 (Fragme... [more]
UPI0006AB33F41.100e-1253.33heterogeneous nuclear ribonucleoprotein H3-like n=... [more]
A0A7S3BYF2_9VIRI1.390e-1257.38Hypothetical protein n=1 Tax=Prasinoderma singular... [more]
A0A0K9RJE8_SPIOL1.590e-1250.75Uncharacterized protein n=4 Tax=Chenopodiaceae Tax... [more]
A0A6U4CVK5_9STRA1.990e-1255.74Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7C8YU07_OPUST2.150e-1251.56Uncharacterized protein n=1 Tax=Opuntia streptacan... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 5..80
e-value: 1.2E-15
score: 59.1
NoneNo IPR availablePANTHERPTHR13976:SF25RNA-BINDING PROTEIN FUSILLIcoord: 9..67
NoneNo IPR availablePANTHERPTHR13976HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATEDcoord: 9..67
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 5..66

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1071contigP-lacustris_contig1071:20917..22459 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1071.635.1mRNA_P-lacustris_contig1071.635.1Pleurocladia lacustris SAG_25_93mRNAP-lacustris_contig1071 4940..22802 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-lacustris_contig1071.635.1 ID=prot_P-lacustris_contig1071.635.1|Name=mRNA_P-lacustris_contig1071.635.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=127bp
MSMPVVHTGVIRMRGLPFSATKQDVMNFFQGTQGMPVTEDTIQFVVRGDG
RVTGEAFVSFGSPSESEEREPHGHPLRGAFCFHSGGNSATHEQDLRGRFP
EPLLRDAGETRRLPEPLLSRLLLFQP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf