prot_P-lacustris_contig1046.457.1 (polypeptide) Pleurocladia lacustris SAG_25_93

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-lacustris_contig1046.457.1
Unique Nameprot_P-lacustris_contig1046.457.1
Typepolypeptide
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Sequence length430
Homology
BLAST of mRNA_P-lacustris_contig1046.457.1 vs. uniprot
Match: A0A6H5JE62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE62_9PHAE)

HSP 1 Score: 379 bits (973), Expect = 3.240e-124
Identity = 235/349 (67.34%), Postives = 258/349 (73.93%), Query Frame = 0
Query:   73 RQVKSLQAQQARDPDSLDGAQRVKLGRKQTLVAEISELESLRRDFLEKERES-GADAGGRDSTKEKKSRVPPGPFAVVNAAGDGSQQRQQADLGERVGEDDGAEYTRDGLRLASP-RRMVQPPAPAAAAAGAASALRPTENLRRTTPAPSSSLGEADFFADSVAGFGGSSSMEALKEPGSSIDEHDRQDDQQGGGGINFEARYEGGGGQAE---DARPMVEAPAGGYPKRLALAMSFCRVSDRETCEILVEMGRVTVNGVVATDPGIKVDLLTDIVVANGSAVTFPGKIDNSDETRKPREDEGKRTGPIPKAEKNTWKQKTKYRWNMDDGLLAKRTRRAANAKAFDKKR 416
            RQVKSLQAQQAR PDSLD AQRVKLGRKQTL+AEISELE+LRRD  +KE ES GA AG +++   KKSR+PPGPFA  NAAG G   RQ      +  EDDGAEYTRDGLRLASP RR+                                SLG+AD F+D   G GG  +MEAL +P  S+D  D + ++ G GG N+E  +E  GG +E   +ARPMVEA AGGYPKRLA  MSFCRVSD+ TCEILVEMGRVTVNGVVA DPGIKVDLLTDIVVANG AVTFPGKIDNSDETR+PRED GKRTGPIPKAEKNTWKQKTKYRW MDDGLLAKRTRRAANAKAFDKKR
Sbjct:  177 RQVKSLQAQQARAPDSLDDAQRVKLGRKQTLLAEISELEALRRDLRQKEWESDGASAGPKEN---KKSRLPPGPFAAANAAGGGHDTRQH-----QPEEDDGAEYTRDGLRLASPKRRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLGDADLFSDG--GGGGVLAMEALIKP--SMDGQDWEKEE-GDGGFNWEEGFEDAGGSSEGREEARPMVEALAGGYPKRLAGLMSFCRVSDKATCEILVEMGRVTVNGVVARDPGIKVDLLTDIVVANGVAVTFPGKIDNSDETRRPREDAGKRTGPIPKAEKNTWKQKTKYRWGMDDGLLAKRTRRAANAKAFDKKR 512          
BLAST of mRNA_P-lacustris_contig1046.457.1 vs. uniprot
Match: D7FYC7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYC7_ECTSI)

HSP 1 Score: 311 bits (796), Expect = 4.430e-100
Identity = 202/318 (63.52%), Postives = 226/318 (71.07%), Query Frame = 0
Query:   73 RQVKSLQAQQARDPDSLDGAQRVKLGRKQTLVAEISELESLRRDFLEKERES-GADAGGRDSTKEKKSRVPPGPFAVVNAAGDGSQQRQQADLGERVGEDDGAEYTRDGLRLASPRRMVQPPA---------------PAAAAAGAASALRPTENLRRTTPAPSSSLGEADFFADSVAGFGGSSSMEALKEPGSSIDEHDRQDDQQGGGGINFEARYEGGGGQAE---DARPMVEAPAGGYPKRLALAMSFCRVSDRETCEILVEMGRVTVNGVVATDPGIKVDLLTDIVVANGSAVTFPGKIDNSDETRKPREDEGK 371
            RQVKSLQAQQARDPDSLD AQRVKLGRKQTL+ EISELE+LRRD  +KE ES GA AG     KEKKSR+PPGPFA  NAAG G   RQ      ++ EDDGAEYTRDGLRLASP+R VQ                  P+A   GAA+A+            PS SLG+AD F+D   G  G S+MEAL +  SS+D  D + ++ G GG N+E  +E  GG +E   +ARPMVEAPAGGYPKRLA  MSFCRVSD+ TCEILVEMGRVTVNGVVA DPGIKVDLLTDIVVANG AVTFPG IDNSDETR+PRED GK
Sbjct:   36 RQVKSLQAQQARDPDSLDDAQRVKLGRKQTLLTEISELEALRRDLRQKEWESDGASAG----PKEKKSRLPPGPFAAANAAGGGHDTRQH-----QLEEDDGAEYTRDGLRLASPKRQVQXXXXXXXXXXXXXXXXSRPSAGTPGAAAAV------------PSPSLGDADLFSDGDGG--GVSAMEALIK--SSMDGQDWEKEE-GDGGFNWEEGFEDAGGSSEGREEARPMVEAPAGGYPKRLAGLMSFCRVSDKATCEILVEMGRVTVNGVVARDPGIKVDLLTDIVVANGVAVTFPGTIDNSDETRRPREDAGK 327          
BLAST of mRNA_P-lacustris_contig1046.457.1 vs. uniprot
Match: A0A835YSP6_9STRA (S4 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSP6_9STRA)

HSP 1 Score: 117 bits (292), Expect = 4.750e-26
Identity = 64/121 (52.89%), Postives = 81/121 (66.94%), Query Frame = 0
Query:  293 GYPKRLALAMSFCRVSDRETCEILVEMGRVTVNGVVATDPGIKVDLLTDIVVANGSAVTFPGKIDNSDETRKPREDEG--------KRTGPIPKAEK-NTWKQKTKYRWNMDDGLLAKRTR 404
            G PK+L   +S+CRVS RETCE+LV +GRVTVNG V T+   KVD+L D ++ANG+ V  P K DN+     P  DEG        KRTGP+PK+EK  TWKQ TKY W +D GL+A++ R
Sbjct:  166 GLPKKLGTVLSYCRVSTRETCEMLVAIGRVTVNGEVVTNADKKVDILNDEIIANGARVEIPDKFDNTFSA--PPVDEGEARPRGGKKRTGPLPKSEKPKTWKQLTKYTWKVDGGLMARKVR 284          
BLAST of mRNA_P-lacustris_contig1046.457.1 vs. uniprot
Match: A0A4D9D3K9_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D3K9_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 5.590e-7
Identity = 36/87 (41.38%), Postives = 48/87 (55.17%), Query Frame = 0
Query:  267 INFEARYEGGGGQAEDARPMVEAPAGGYPKRLALAMSFCRVSDRETCEILVEMGRVTVNGVVATDPGIKVDLLTDIVVANGSAVTFP 353
            I   A    G   AED    V    G  P+ +   + +CR+SD+ TCEIL+E+G+V VNGVV  DP   VDL+ D +  +G  VT P
Sbjct:  152 IEEAAEQRAGATSAEDLNDDVVG--GRIPRTILKLLVYCRLSDKATCEILLELGKVKVNGVVCDDPVALVDLVKDKIEFDGEPVTLP 236          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig1046.457.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JE62_9PHAE3.240e-12467.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYC7_ECTSI4.430e-10063.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YSP6_9STRA4.750e-2652.89S4 domain-containing protein n=1 Tax=Tribonema min... [more]
A0A4D9D3K9_9STRA5.590e-741.38Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036986RNA-binding S4 domain superfamilyGENE3D3.10.290.10coord: 295..351
e-value: 8.0E-8
score: 33.5
IPR002942RNA-binding S4 domainPROSITEPS50889S4coord: 296..371
score: 10.176
NoneNo IPR availableSUPERFAMILY55174Alpha-L RNA-binding motifcoord: 297..349

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig1046contigP-lacustris_contig1046:58181..61195 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig1046.457.1mRNA_P-lacustris_contig1046.457.1Pleurocladia lacustris SAG_25_93mRNAP-lacustris_contig1046 56941..61327 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-lacustris_contig1046.457.1 ID=prot_P-lacustris_contig1046.457.1|Name=mRNA_P-lacustris_contig1046.457.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=430bp
MPPSMSSSCFLGTSPSALPHQAVLVFLKNGGILTCEWRAGTPRSHAQGIA
FFWHEVKPIPPGVLGLPPNFPSRQVKSLQAQQARDPDSLDGAQRVKLGRK
QTLVAEISELESLRRDFLEKERESGADAGGRDSTKEKKSRVPPGPFAVVN
AAGDGSQQRQQADLGERVGEDDGAEYTRDGLRLASPRRMVQPPAPAAAAA
GAASALRPTENLRRTTPAPSSSLGEADFFADSVAGFGGSSSMEALKEPGS
SIDEHDRQDDQQGGGGINFEARYEGGGGQAEDARPMVEAPAGGYPKRLAL
AMSFCRVSDRETCEILVEMGRVTVNGVVATDPGIKVDLLTDIVVANGSAV
TFPGKIDNSDETRKPREDEGKRTGPIPKAEKNTWKQKTKYRWNMDDGLLA
KRTRRAANAKAFDKKRRLAPRAQKTHWGV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036986S4_RNA-bd_sf
IPR002942S4_RNA-bd