mRNA_P-lacustris_contig999.16268.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig999.16268.1
Unique NamemRNA_P-lacustris_contig999.16268.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
[Close]
BLAST of mRNA_P-lacustris_contig999.16268.1 vs. uniprot
Match: A0A6H5JDA2_9PHAE (Mitochondrial inner membrane protease subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDA2_9PHAE)

HSP 1 Score: 317 bits (813), Expect = 1.760e-106
Identity = 165/229 (72.05%), Postives = 185/229 (80.79%), Query Frame = 1 
Query:   73 VLFANVYSEARSLTAALAVCAVTRIYVIDQRTIMSNSMQPALEFGDRVLVDKISVVFGKLLGWPPGLGLRRGDIVIFSPPAASRDIYADLLHVPTEMTATTTNPVGDG-EGLIPSLAHSWKRWRERRRSPLNSSLDFTKRVVALAGDNVAVRSGVLYVNDRPANEHRRS---SYLLGPTKVPKDHIVVLGDNRDESFDSHVWGPLPVRNVIGCARARYWPFIRAAWLGR 747
            +L A+ YSEARSLTAAL +CA TR+ V+DQRT+MS SMQPAL FGDRVLVDK S++ GKL G PPGLGLRRGDIVIFSPP ASR++YA+LL + +  T  T NPVGD  +G I SL        ERRRSPLNSSLDFTKRVVA+AGD+VAVR GVLYVN+ PA+E +RS   SY  GPT VPKDHI+VLGDNRD SFDSHVWGPLPVRNVIGCARARYWP  RAAWL R
Sbjct:    1 MLTASSYSEARSLTAALVLCAATRMCVVDQRTVMSCSMQPALAFGDRVLVDKASIILGKLPGRPPGLGLRRGDIVIFSPPEASRNMYAELLRLASGATTATPNPVGDRRKGHILSLTRC-----ERRRSPLNSSLDFTKRVVAVAGDHVAVRRGVLYVNESPADERQRSARASYSFGPTVVPKDHIIVLGDNRDASFDSHVWGPLPVRNVIGCARARYWPVNRAAWLKR 224
[Close]
BLAST of mRNA_P-lacustris_contig999.16268.1 vs. uniprot
Match: A0A7J7IBZ0_9RHOD (Mitochondrial inner membrane protease subunit n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IBZ0_9RHOD)

HSP 1 Score: 141 bits (355), Expect = 3.790e-37
Identity = 88/229 (38.43%), Postives = 116/229 (50.66%), Query Frame = 1 
Query:   52 WLAWMKTVLFANVYSEARSLTAALAVCAVTRIYVIDQRTIMSNSMQPALEFGDRVLVDKISVVFGKLLGWPPGLGLRRGDIVIFSPPAASRDIYADLLHVPTEMTATTTNPVGDGEGLIPSLAHSWKRWRERRRSPLNSSLDFTKRVVALAGDNVAVRSGVLYVNDRPANEH---RRSSYLLGPTKVPKDHIVVLGDNRDESFDSHVWGPLPVRNVIGCARARYWPFIR 729
            W  W   +L+   +S+ R  TA+ A   + R++VI+ R I S SM P  E GD++ VDK +   G+         + RGD+V+F PP A        L   ++MTA   N  G+ +       H +            +     KRVVA+AGD VAVR G LYVN     E     +  Y  GP +VP+  +VVLGDNR  S DSH+WG LP RNVIG A  RYWP  R
Sbjct:   45 WRRWWHRLLYDEQFSDVRVFTASFAAAVLLRVFVIEPRYIPSLSMFPTFEIGDQLFVDKATQKLGR--------HIERGDVVVFYPPPA--------LIEASKMTAQALNAAGEKD------VHQY-----------GAKDAMIKRVVAVAGDTVAVRDGRLYVNGEAQIEPYVTEQPDYRWGPVQVPEGCLVVLGDNRSNSLDSHIWGFLPERNVIGRAVFRYWPITR 240
[Close]
BLAST of mRNA_P-lacustris_contig999.16268.1 vs. uniprot
Match: M1UNG9_CYAM1 (Mitochondrial inner membrane protease subunit n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1UNG9_CYAM1)

HSP 1 Score: 132 bits (331), Expect = 1.080e-32
Identity = 85/232 (36.64%), Postives = 115/232 (49.57%), Query Frame = 1 
Query:   43 VLMWLAWMKTVLFANVYSEARSLTAALAVCAVTRIYVIDQRTIMSNSMQPALEFGDRVLVDKISVVFGKLLGWPPGLGLRRGDIVIFSPPAASRDIYADLLHVPTEMTATTTNPVGDGEGLIPSLAHSWKRWRERRRSPLNSSLDFTKRVVALAGDNVAVRSGVLYVNDRPANEH---RRSSYLLGPTKVPKDHIVVLGDNRDESFDSHVWGPLPVRNVIGCARARYWPFIR 729
            V  W  W + +   + +++ R  TA+       R +V++ R I S SM P  + GD++LVDK+++  G+         ++RGD+V+F PP A       L+    E TA   N  G+      + AH +            +     KRVVAL GD V +R G LYVN     E        Y  GP +VP  ++VVLGDNR  S DSHVWG LP RNVIG A  RYWP  R
Sbjct:  132 VQQWQVWWQRLWRDDKFADVRVFTASFLAAVFIRAFVVEPRYIPSLSMYPTFDVGDQLLVDKVTLKLGR--------HIQRGDVVVFYPPPA-------LIEASKE-TAKALNAAGE------TGAHQY-----------GARDAMIKRVVALGGDVVEIRDGRLYVNGEAQIETYIAESPDYQWGPVQVPDGYLVVLGDNRSNSLDSHVWGFLPERNVIGRAVFRYWPLTR 330
[Close]
BLAST of mRNA_P-lacustris_contig999.16268.1 vs. uniprot
Match: A0A6M0RSL3_9CYAN (Signal peptidase I n=4 Tax=Leptolyngbyaceae TaxID=1890438 RepID=A0A6M0RSL3_9CYAN)

HSP 1 Score: 123 bits (309), Expect = 9.530e-31
Identity = 78/220 (35.45%), Postives = 106/220 (48.18%), Query Frame = 1 
Query:   70 TVLFANVYSEARSLTAALAVCAVTRIYVIDQRTIMSNSMQPALEFGDRVLVDKISVVFGKLLGWPPGLGLRRGDIVIFSPPAASRDIYADLLHVPTEMTATTTNPVGDGEGLIPSLAHSWKRWRERRRSPLNSSLDFTKRVVALAGDNVAVRSGVLYVNDRPANEH---RRSSYLLGPTKVPKDHIVVLGDNRDESFDSHVWGPLPVRNVIGCARARYWP 720
            T L   V S AR +  A+A+  V R+++ + R I SNSM P L  GDR+L++K+S  F      PP      GDIV+F PP   + I                       G  P  A                   F KRV+ L GD +AVR G +Y ND+P  E       +Y + P  VP + + V+GDNR++S DSH+WG LP+ N+IG A  R+WP
Sbjct:   35 TSLQTMVKSNARLVAIAMAIAVVIRLFIAEPRFIPSNSMDPTLHIGDRLLIEKLSYRFH-----PP----HHGDIVVFEPPPQLQAI-----------------------GYRPEQA-------------------FIKRVMGLPGDTLAVRQGQVYRNDQPLTEPYILAAPNYEMTPVAVPDNTVFVMGDNRNDSNDSHIWGFLPIENIIGHATVRFWP 203
[Close]
BLAST of mRNA_P-lacustris_contig999.16268.1 vs. uniprot
Match: A0A2W6ZSA2_9CYAN (Signal peptidase I n=7 Tax=Cyanobacteria/Melainabacteria group TaxID=1798711 RepID=A0A2W6ZSA2_9CYAN)

HSP 1 Score: 120 bits (302), Expect = 9.530e-30
Identity = 80/229 (34.93%), Postives = 103/229 (44.98%), Query Frame = 1 
Query:   52 WLAWMKTVLFANVYSEARSLTAALAVCAVTRIYVIDQRTIMSNSMQPALEFGDRVLVDKISVVFGKLLGWPPGLGLRRGDIVIFSPPAASRDIYADLLHVPTEMTATTTNPVGDGEGLIPSLAHSWKRWRERRRSPLNSSLDFTKRVVALAGDNVAVRSGVLYVNDRPANEH---RRSSYLLGPTKVPKDHIVVLGDNRDESFDSHVWGPLPVRNVIGCARARYWPFIR 729
            W  W    L+   +S  R L  ALA+    R+ + + R I SNSM P L  GDR+LV+KIS        W P     RGDIV+F+PP                                P LA      R+           F KRV+   G  +AVR G + V+  P  E       +Y L P  VP   + V+GDNR++S DSHVWG LP +N+IG AR R+WP  R
Sbjct:   27 WARWRS--LWPGQWSNIRVLAIALAIALAVRVLIAEPRYIPSNSMDPTLHIGDRLLVEKISY------RWQPP---HRGDIVVFAPP--------------------------------PQLAQLGYETRQA----------FIKRVIGEPGQTIAVRQGQVIVDGEPLQEDYTLEAPAYTLEPVTVPPGQVFVMGDNRNDSNDSHVWGGLPQQNIIGRARFRFWPLDR 202
[Close]
BLAST of mRNA_P-lacustris_contig999.16268.1 vs. uniprot
Match: A0A1Z3HHQ3_9CYAN (Signal peptidase I n=1 Tax=Halomicronema hongdechloris C2206 TaxID=1641165 RepID=A0A1Z3HHQ3_9CYAN)

HSP 1 Score: 119 bits (297), Expect = 4.690e-29
Identity = 73/219 (33.33%), Postives = 103/219 (47.03%), Query Frame = 1 
Query:   97 EARSLTAALAVCAVTRIYVIDQRTIMSNSMQPALEFGDRVLVDKISVVFGKLLGWPPGLGLRRGDIVIFSPPAASRDIYADLLHVPTEMTATTTNPVGDGEGLIPSLAHSWKRWRERRRSPLNSSLDFTKRVVALAGDNVAVRSGVLYVNDRPANEH---RRSSYLLGPTKVPKDHIVVLGDNRDESFDSHVWGPLPVRNVIGCARARYWPFIRAAWLG 744
              R L  ALA+  +TR+++ + R I SNSM+P L  GDR++V+K+S         PP       D+++F PP   R+                                    W  R R        F KRV+A+ G  V+V+ G +YV+  P  E        Y + P  VP+ H+ V+GDNR++S DSHVWG LP  N+IG A+ R+WP  R   LG
Sbjct:   36 NVRLLAVALAIALLTRVFIAEPRFIPSNSMEPTLAIGDRLIVEKVSYRLS-----PP----HPKDVIVFQPPPQLRE------------------------------------WGYRGRQA------FIKRVIAVPGQTVSVQQGQVYVDGDPLQEDYILEPPQYQMDPVYVPEGHVFVMGDNRNDSNDSHVWGVLPQDNIIGRAQFRFWPLDRLGSLG 203
[Close]
BLAST of mRNA_P-lacustris_contig999.16268.1 vs. uniprot
Match: UPI0019DBD855 (Signal peptidase I n=1 Tax=Leptolyngbyaceae cyanobacterium M65_K2018_010 TaxID=2747810 RepID=UPI0019DBD855)

HSP 1 Score: 119 bits (297), Expect = 5.630e-29
Identity = 80/220 (36.36%), Postives = 100/220 (45.45%), Query Frame = 1 
Query:   94 SEARSLTAALAVCAVTRIYVIDQRTIMSNSMQPALEFGDRVLVDKISVVFGKLLGWPPGLGLRRGDIVIFSPPAASRDIYADLLHVPTEMTATTTNPVGDGEGLIPSLAHSWKRWRERRRSPLNSSLDFTKRVVALAGDNVAVRSGVLYVNDRPANEH---RRSSYLLGPTKVPKDHIVVLGDNRDESFDSHVWGPLPVRNVIGCARARYWPFIRAAWLG 744
            +  R L  AL +  V R+ + + R I SNSM P L+ GDR+LVDK+S        W P     RGDIV+F PPA                       VG G                      N    F KR+V   GD + V  G + +N +   E        Y LGP  VP  H+ VLGDNR++S DSHVWGPLP  N+IG AR R+WP  R   +G
Sbjct:   42 ANLRVLAIALVIALVVRVLIAEPRYIPSNSMDPTLQIGDRLLVDKLSY------RWQPP---HRGDIVVFKPPAQL---------------------VGLG---------------------YNGGQAFIKRIVGEPGDTLEVVDGQVRLNGQILAESYILAPPQYHLGPVTVPPGHLFVLGDNRNDSNDSHVWGPLPQANLIGRARFRFWPLDRFGQVG 210
[Close]
BLAST of mRNA_P-lacustris_contig999.16268.1 vs. uniprot
Match: U9W269_9CYAN (Signal peptidase I n=1 Tax=Leptolyngbya sp. Heron Island J TaxID=1385935 RepID=U9W269_9CYAN)

HSP 1 Score: 117 bits (294), Expect = 8.960e-29
Identity = 74/214 (34.58%), Postives = 104/214 (48.60%), Query Frame = 1 
Query:   88 VYSEARSLTAALAVCAVTRIYVIDQRTIMSNSMQPALEFGDRVLVDKISVVFGKLLGWPPGLGLRRGDIVIFSPPAASRDIYADLLHVPTEMTATTTNPVGDGEGLIPSLAHSWKRWRERRRSPLNSSLDFTKRVVALAGDNVAVRSGVLYVNDRPANEH---RRSSYLLGPTKVPKDHIVVLGDNRDESFDSHVWGPLPVRNVIGCARARYWP 720
            V S A+ +  A+A+  V R+++ + R I SNSM P L  GDR+LV+K+S  F      PP    +RGDIV+F PP                       P     G  P  A                   F KRV+ L GD + V  G +Y+N++P  E       +Y +    VP + + V+GDNR++S DSH+WG LP++NVIG A  R+WP
Sbjct:   20 VRSNAKLMAIAVAIAVVIRLFIAEPRFIPSNSMDPTLHIGDRLLVEKLSYRFH-----PP----QRGDIVVFEPP-----------------------PQLQAVGYRPDQA-------------------FIKRVMGLPGDTLTVHDGRVYLNNQPLTEPYILALPNYEMKSVTVPDNTLFVMGDNRNDSNDSHIWGFLPIKNVIGHATVRFWP 182
[Close]
BLAST of mRNA_P-lacustris_contig999.16268.1 vs. uniprot
Match: A0A7T5E6U7_9CYAN (Signal peptidase I n=2 Tax=Leptolyngbya sp. BL0902 TaxID=1115757 RepID=A0A7T5E6U7_9CYAN)

HSP 1 Score: 116 bits (291), Expect = 2.000e-28
Identity = 75/218 (34.40%), Postives = 105/218 (48.17%), Query Frame = 1 
Query:   85 NVYSEARSLTAALAVCAVTRIYVIDQRTIMSNSMQPALEFGDRVLVDKISVVFGKLLGWPPGLGLRRGDIVIFSPPAASRDIYADLLHVPTEMTATTTNPVGDGEGLIPSLAHSWKRWRERRRSPLNSSLDFTKRVVALAGDNVAVRSGVLYVNDRPANEH---RRSSYLLGPTKVPKDHIVVLGDNRDESFDSHVWGPLPVRNVIGCARARYWPFIR 729
            +++   R L  AL V  V R+ + + R I SNSM P L  GDR+LVDKIS        W       RGDIV+F+PPA                              +  L ++    R++          F KR++   GD + V+ G + +N +P  E        Y +   K+P  ++ VLGDNR++S DSHVWGPLP +N+IG AR R+WPF R
Sbjct:   10 SLWGNVRVLLIALVVALVVRVAIAEPRYIPSNSMDPTLHIGDRLLVDKISY------RWQSP---HRGDIVVFNPPAQ-----------------------------LVKLGYT----RDQA---------FIKRIIGEPGDTIQVQGGRVILNGQPLPETYIAEAPQYEMPAVKIPPGYVFVLGDNRNDSNDSHVWGPLPQQNLIGKARLRFWPFDR 176
[Close]
BLAST of mRNA_P-lacustris_contig999.16268.1 vs. uniprot
Match: UPI001985DC91 (Signal peptidase I n=1 Tax=Candidatus Sericytochromatia bacterium TaxID=2762020 RepID=UPI001985DC91)

HSP 1 Score: 117 bits (292), Expect = 2.310e-28
Identity = 72/196 (36.73%), Postives = 96/196 (48.98%), Query Frame = 1 
Query:  151 VIDQRTIMSNSMQPALEFGDRVLVDKISVVFGKLLGWPPGLGLRRGDIVIFSPPAASRDIYADLLHVPTEMTATTTNPVGDGEGLIPSLAHSWKRWRERRRSPLNSSLDFTKRVVALAGDNVAVRSGVLYVNDRPANE---HRRSSYLLGPTKVPKDHIVVLGDNRDESFDSHVWGPLPVRNVIGCARARYWPFIR 729
            V + R I S SM P L  GDR++V+KIS  FG           RRG+I++F PP           H P EM                S    + RW           + + KRVV L G+ +AV  G +++ND+   E   +   SY + P  VP  H+ ++GDNR+ S DSHVWGPLP+ NVIG A  R+WP  R
Sbjct:   40 VAEARFIPSESMVPTLVIGDRLIVEKISPHFG---------APRRGEILVFYPPQ----------HEPVEM----------------STGVRFVRWLG-----FTPEVAYIKRVVGLPGETIAVHDGQVWINDKALVEPYTNEAPSYEMPPQTVPPGHLFMMGDNRNNSQDSHVWGPLPIDNVIGHAAVRFWPITR 195
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig999.16268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JDA2_9PHAE1.760e-10672.05Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A7J7IBZ0_9RHOD3.790e-3738.43Mitochondrial inner membrane protease subunit n=1 ... [more]
M1UNG9_CYAM11.080e-3236.64Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A6M0RSL3_9CYAN9.530e-3135.45Signal peptidase I n=4 Tax=Leptolyngbyaceae TaxID=... [more]
A0A2W6ZSA2_9CYAN9.530e-3034.93Signal peptidase I n=7 Tax=Cyanobacteria/Melainaba... [more]
A0A1Z3HHQ3_9CYAN4.690e-2933.33Signal peptidase I n=1 Tax=Halomicronema hongdechl... [more]
UPI0019DBD8555.630e-2936.36Signal peptidase I n=1 Tax=Leptolyngbyaceae cyanob... [more]
U9W269_9CYAN8.960e-2934.58Signal peptidase I n=1 Tax=Leptolyngbya sp. Heron ... [more]
A0A7T5E6U7_9CYAN2.000e-2834.40Signal peptidase I n=2 Tax=Leptolyngbya sp. BL0902... [more]
UPI001985DC912.310e-2836.73Signal peptidase I n=1 Tax=Candidatus Sericytochro... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig999contigP-lacustris_contig999:66412..71353 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.2
Seed ortholog evalue1.3e-27
Seed eggNOG ortholog45157.CMB139CT
Preferred nameTPP1
KEGG koko:K03100
KEGG Pathwayko02024,ko03060,map02024,map03060
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0004175,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006465,GO:0006508,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008233,GO:0009507,GO:0009526,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009657,GO:0009668,GO:0009987,GO:0010027,GO:0010467,GO:0016020,GO:0016043,GO:0016485,GO:0016787,GO:0019538,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0034641,GO:0042651,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0051604,GO:0055035,GO:0061024,GO:0070011,GO:0071704,GO:0071840,GO:0140096,GO:1901564
EggNOG free text desc.serine-type peptidase activity
EggNOG OGsCOG0681@1,KOG0171@2759
EC3.4.21.89
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Exons5
Model size851
Cds size714
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817429.8173802-UTR-P-lacustris_contig999:66411..665001622817429.8173802-UTR-P-lacustris_contig999:66411..66500Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig999 66412..66500 -
1693495062.350388-UTR-P-lacustris_contig999:66411..665001693495062.350388-UTR-P-lacustris_contig999:66411..66500Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig999 66412..66500 -
1622817429.886857-UTR-P-lacustris_contig999:71305..713531622817429.886857-UTR-P-lacustris_contig999:71305..71353Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig999 71306..71353 -
1693495062.429915-UTR-P-lacustris_contig999:71305..713531693495062.429915-UTR-P-lacustris_contig999:71305..71353Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig999 71306..71353 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817429.8286717-CDS-P-lacustris_contig999:66500..667761622817429.8286717-CDS-P-lacustris_contig999:66500..66776Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig999 66501..66776 -
1693495062.3678567-CDS-P-lacustris_contig999:66500..667761693495062.3678567-CDS-P-lacustris_contig999:66500..66776Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig999 66501..66776 -
1622817429.8429344-CDS-P-lacustris_contig999:67021..671841622817429.8429344-CDS-P-lacustris_contig999:67021..67184Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig999 67022..67184 -
1693495062.383069-CDS-P-lacustris_contig999:67021..671841693495062.383069-CDS-P-lacustris_contig999:67021..67184Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig999 67022..67184 -
1622817429.8530688-CDS-P-lacustris_contig999:68482..685771622817429.8530688-CDS-P-lacustris_contig999:68482..68577Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig999 68483..68577 -
1693495062.395776-CDS-P-lacustris_contig999:68482..685771693495062.395776-CDS-P-lacustris_contig999:68482..68577Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig999 68483..68577 -
1622817429.8638442-CDS-P-lacustris_contig999:69592..696521622817429.8638442-CDS-P-lacustris_contig999:69592..69652Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig999 69593..69652 -
1693495062.405269-CDS-P-lacustris_contig999:69592..696521693495062.405269-CDS-P-lacustris_contig999:69592..69652Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig999 69593..69652 -
1622817429.874913-CDS-P-lacustris_contig999:71185..713051622817429.874913-CDS-P-lacustris_contig999:71185..71305Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig999 71186..71305 -
1693495062.4159915-CDS-P-lacustris_contig999:71185..713051693495062.4159915-CDS-P-lacustris_contig999:71185..71305Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig999 71186..71305 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig999.16268.1prot_P-lacustris_contig999.16268.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig999 66501..71305 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig999.16268.1

>prot_P-lacustris_contig999.16268.1 ID=prot_P-lacustris_contig999.16268.1|Name=mRNA_P-lacustris_contig999.16268.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=238bp
MWLAWMKTVLFANVYSEARSLTAALAVCAVTRIYVIDQRTIMSNSMQPAL
EFGDRVLVDKISVVFGKLLGWPPGLGLRRGDIVIFSPPAASRDIYADLLH
VPTEMTATTTNPVGDGEGLIPSLAHSWKRWRERRRSPLNSSLDFTKRVVA
LAGDNVAVRSGVLYVNDRPANEHRRSSYLLGPTKVPKDHIVVLGDNRDES
FDSHVWGPLPVRNVIGCARARYWPFIRAAWLGRDIPP*
back to top

mRNA from alignment at P-lacustris_contig999:66412..71353-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig999.16268.1 ID=mRNA_P-lacustris_contig999.16268.1|Name=mRNA_P-lacustris_contig999.16268.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=4942bp|location=Sequence derived from alignment at P-lacustris_contig999:66412..71353- (Pleurocladia lacustris SAG_25_93)
CAAGAACACACGTGGTGACGTGTTGGGCTTGTGGGAGCTCGGGTGTTGAT
GTGGTTAGCGTGGATGAAGACAGTACTCTTTGCAAACGTATACAGTGAAG
CCAGGTCATTAACCGCTGCGCTTGCGGTATGCGCTGTAACGAGAATATAT
GTGATCGACCAGAGGACGGTGAGCGAGAGCTAGCGATATTCTGTAAAGTA
TTGTGTACAAGGATTCAACTGCTGTCTCTTCTGTTTTCGGATCGCATGCT
CAACCATGAACTTTCTACACCACCATTTAGGGAGTTTGGCGCTGTTAATC
AGCTACTGCAGCTCTCCGACGTAGATTTTCGAGGTTCAAGGTGGGCTGAA
CTTGAGTAGCAGTTGACCTTTTCACTGGCTGTAATGATGTGAGATATGGA
TTTGAAGGGGCGGGGGGACAACACCAAGCGTACGTAGTAGTTCAATACCC
TGGGATTTCTGCAAACGGGAAATCCGCAAGTAGTGACACGACGCGCAGTT
GCTCGCAAACGCAAGTCTCGGCCGTCAGCTGGGGGTCTCTTATCACAGAT
CTTCTGTGCCTTCAGGCGGAAAAAAATGATCATTTTATTGATCACCTCTA
TTATACGTTCGTAGAGGGGATGGGAACAAAACAACCCGATCCCCAGCATC
AATGGGAGTTGTACAGCACTAGAGAGAACGTCCACGCGCGTAGGTGACCA
CGCATACCATCTAAAGCTCGCACATAGAGTGGGACAGTAGCTCAGTTGTA
CATGCGCTTCTTCACCTGTCAACTCGCTCGCTCGGCCGCTCTTCTTACAC
AAGATCCACTTCGAAATGAACTGCTACATTTCACGCGCTGCATACATACA
ACATGTACATGCTACTACTACACAACACAGGACACACCCCACACACTGTG
CATCATTGTCGCGCACACACAGCAGCGGTAGCTTGCTCGCTGCTTAGGTC
TGTCAAACTTCGCGCTTGTGACAGAGGAGCTCTAGTGAGCCCGAAGGCCA
ATGCCTGGTGTGGGATGTGGGGCAGCAGAGAAGTACAGAAGTGCTGTAAA
GCCTGAGGGTCTACAAGTGGAAAAAATTGATCATTTGGTGGCCAAAATAT
TGGTCATTCGTTATTATGCTGAATAAAGAGGACTGGCACGTGCTGGATAG
CAACGACTTGCACGCCTAGCGCGTTCGTTTTGAAAAAATTTCCCGCTTGG
CGATGCTTTACACACCCTCAGATACACCACAAGCCTGTCGCGGACGTTTG
TCACGACCCTGGGCCCAGATAGCTTCTGCCCTGGAGAAGTACACATCTGG
CTCAGAGCTGTACTTCTCTCTCGCTCCTTCTACCTCTCCCCATGTTTTTT
TTTTTTGTGGTTCAGAAAAAAAAAACCCTGGACCCAGAGGGGTTAAGGGC
TGTTGTCAAAAGGTGCCATTGGGTCTTCTCCACTTTTCATCGTCTTGCAT
TAGTTGTGAACTGCGCCACTTAGGTTCTGCTGCTACTCCTATGTGCCGTT
CTTCTTCGCCACCAACCCTCTCGCGGCGAACAAAAAAAGCAATGCGGAGT
AGGGCTTCAGTTGAGGCCGGGAGTTGCCCCCCTCGGGCTATCTATGAAGC
ACGTTTGACACGAGCCAAAAGTTGTGTCAACAGAACCAGACGCCCGACAG
CATCCTCAACTACAACGACACTACACCTTCGTGTCTGTTTGCTTCCGACA
GATCATGTCTAACTCTATGCAGCCCGCATTGGAATTCGGAGATCGGGTGC
TGGTGGACAAGGTACGGACTCCGTCTGCAGCGGGGTGGGTGACAAGAAAC
ATAGAGTCGTGTGGGATTTCTGTACGTTACATGTGCATGTACTGTAGGTG
CACAGTATTTCTTTCGGTGGGGCTCCCCCCCTCCCGCTCACCCCGACAGG
CACGTGTCACTTGAGAAACGACACACTCTGGAGTATGTTTTATGTAACAA
TCTAACGAGCCAACGAAAGACAAAATGCCATGAGAGACACAAACACGACA
AGGTTGGTGGTGTGGCTTCGGAGTTTGCTGCACAAGCTACCCTCATCTTT
TCTAGCGGGCAAACGCCTTGTTGTTCGAAACGCATGAATGATCTGAATAT
CCTCCACTTCCACTTTAACGCACCCGGCCACAGCACATAAAGCAAGCCTT
TTCTTCTTGGCTAGCCTATTGGTTTCGGTGTGGAACAGGCGCAAGGGACA
GGCTACTGCTGTTGGATACCGGTGGTGCCCCGCAAAATTCTGCAGCGATG
CGTTTTGTGTTTGCTTGATTCTACCACTGGAGTGCGCAGGCCAACTGCTA
TCTCTCTCCTTCCGCGCTGCGAAAGGAGCAGTAGCGAAAGAGCACGGCAG
TGTGATGCCTCTCCTTGAGTATGAAGATAGACCCAGATCAGTGGCCGCTT
GCCGAACGTCAACAAACCAACAAACATAACCTTTCTCCTGGCAGCAAGCA
GGCGTAACCTCTCTTTTTCCTGTCAGCTGCAGTGCTGCAGTGCTGCTGGG
GTGGGGCTGATAGAGCAGCTACAAGGTTCTGCTCATGCTGCTCATGCAGC
TGCCGCTGTTCTGTGTCGTCTTTTTGCATTCCGCACCGGACCGTCTGACT
GATCCAAAAGACCACCAAACGCAGAGTTTGTCCGCACATTGGGGCCCCGA
GCTCACGCAAAGCTGAGAGAAACAACGCGGTGCCACTGATGAATGTCGTC
GCCACTACGTTAGGTTGTGCTGCAAATGTATGTTGCTCACATGTCAGCTG
CGTTCTTTGCTTCTTTCTCTCTGTAGATATCTGTGGTTTTCGGGAAGTTA
CTGGGTTGGCCACCGGGTTTGGGCCTTCGCCGGGGTGATATCGTGATCTT
CTCGCCGCCAGCAGCTTCCAGGTGAACACCCGGATCCATGACCTTTCAAT
ATTCCAGTTGATTCAAGTAAGGGGTATGTTGGAGATGTCTGTTTGCAGCA
GCAGCGGTGTGGCTCGCTGCGAAAATATCGTGGGCTGATGAATAGCCCAC
CCGCGGAGGTGTATACACAAGAGTGTAATGTGCGACTCTGCGTGTGCCTC
GGAACGAAGAGATGTAGAAAACATCTTGTTATTACTGGCTGACCCCAGGG
CCAGGTTTTGATGATTAGATGGCAGACGATGGGAGTGAGAGAGTGGGGGC
GAGCACCACAGGGACGAGCCACACTCGGATCCCAAACACACGGGCTAATG
TACTTTACCGATTACGATAATCATGCGGGTATTCCGACATTCAGCGACGA
TATGAGAACTTCCTATAGGCTATGAGAAGTTTCTATAGGCTATGAGAACT
TCCTATAGGTCAATAGACCGGTGTCTAGATACTTCAGAGGACAGAACATT
TGCCCGTCAGATCATTACGGTAACAATCCTAAAAATGCGGTGGAACCGCA
ACAGTTTCCCGAAAGCGGTTCTACCGTGCACTGAACCGACACTTACGAAT
TGCTCGACGCAACACGCAGGACAACTGCGGTACATAACTGAACAGTGCCA
CCGATAGGATAAGCATGCAAATCCTTAACACTTTGAACGCCACAACTAGA
CTACTGCTGCAGCTCAGGCCAATTGCCCTGCTATGATATTGTTCTCTACT
GCTGCGTGTAACAAGAAAAAATTCCAACGCTGTGACAGTCCCGTGCAATA
CACCAGAGTACAGAACGCCAGTCTGGATACGCCGCACGTGTAGTGTACGT
GCTACAGTGAACTAACTGCTCCCACGCTATAACCTGCCTCTGTATGACAT
ATCCTGCATGCAACACAAAATATCCCTGACAGGGTACTACACCAACCCTC
GATAGACGATTCAAAGGACGGCAGAAGTGTCGGTATGTTCATGCCGTCAG
GATCCCAAAAAAGCCTTGTAGACGAAGGAAGTGGTGCATTTTTAACCTTC
GCTGGAGCAGTTGCAGAGGCCAGGCCGCCCCTGTATCGAAATATATGAAT
ATGATCTGAACCCCCTTCTTGCTTCCAGGAAGCAGGAAGATTTTCTCTTT
TGGGCGTTCTGCAAGACTTGTTCAGCTGTGGTCAGAGGAATTCCTGCTAG
AGCGTCTTTCTTTGCATGAAAGAATTAGGTGCCGTCAATCCTGCTGTTTA
CTTCAGCTGAACTGCTGCCCAACTTCTGCTTGTTCTCCACAAACTCCCAC
TACGGCCTGCATTGTTCAGAGATATCTACGCCGACCTGCTTCATGTTCCA
ACTGAAATGACGGCAACCACAACGAACCCAGTAGGGGACGGAGAGGGGCT
CATTCCATCACTGGCACACTCGTGGAAGAGGTGGCGCGAGCGTAGGCGGA
GTCCGCTAAACTCGTCATTGGACTTCACGAAGGTGATGATGACTGTGGTA
CACCTGCATGAACAGCGTCGTATTTTACCACGCATTTCTCCTGAAGCGGG
ACCGAGATCTCACGTCGCGGCTACGTAGTGCTCGAGGAGCGTCTCCCCAA
TTTTGTCTTGGTAATGCATGCGTTTGTCGATCCTCGCAAATCACATGAAG
GCATGATTTCAAAAGAACTTGACTCAGCAGTGATCCTCCCACGCCTATTT
GTCTCCCGACCTCCTTCACCATGGCAGCGTGTGGTGGCCTTAGCAGGAGA
TAATGTTGCCGTTAGAAGTGGCGTGCTCTACGTCAATGACCGCCCAGCGA
ACGAACACCGACGCTCCAGCTATCTACTAGGACCAACGAAGGTACCGAAG
GACCATATCGTTGTGCTTGGAGACAACAGAGACGAGAGTTTTGACTCTCA
CGTCTGGGGGCCACTCCCGGTTCGGAACGTGATAGGGTGCGCAAGGGCGC
GATATTGGCCGTTTATCCGAGCGGCTTGGCTCGGGAGAGATATCCCACCT
TGATCAATGATGATTTGGCCTTGGACAATGGGGCAGGCACCCGTTTTTGT
GTCTGCATATTGAGATATTATGTGGTTTCAGTGTCTCTTACG
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig999:66412..71353-

>mRNA_P-lacustris_contig999.16268.1 ID=mRNA_P-lacustris_contig999.16268.1|Name=mRNA_P-lacustris_contig999.16268.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1428bp|location=Sequence derived from alignment at P-lacustris_contig999:66412..71353- (Pleurocladia lacustris SAG_25_93)
ATGTGGTTAGCGTGGATGAAGACAGTACTCTTTGCAAACGTATACAGTGA
AGCCAGGTCATTAACCGCTGCGCTTGCGGTATGCGCTGTAACGAGAATAT
ATGTGATCGACCAGAGGACGATGTGGTTAGCGTGGATGAAGACAGTACTC
TTTGCAAACGTATACAGTGAAGCCAGGTCATTAACCGCTGCGCTTGCGGT
ATGCGCTGTAACGAGAATATATGTGATCGACCAGAGGACGATCATGTCTA
ACTCTATGCAGCCCGCATTGGAATTCGGAGATCGGGTGCTGGTGGACAAG
ATCATGTCTAACTCTATGCAGCCCGCATTGGAATTCGGAGATCGGGTGCT
GGTGGACAAGATATCTGTGGTTTTCGGGAAGTTACTGGGTTGGCCACCGG
GTTTGGGCCTTCGCCGGGGTGATATCGTGATCTTCTCGCCGCCAGCAGCT
TCCAGATATCTGTGGTTTTCGGGAAGTTACTGGGTTGGCCACCGGGTTTG
GGCCTTCGCCGGGGTGATATCGTGATCTTCTCGCCGCCAGCAGCTTCCAG
AGATATCTACGCCGACCTGCTTCATGTTCCAACTGAAATGACGGCAACCA
CAACGAACCCAGTAGGGGACGGAGAGGGGCTCATTCCATCACTGGCACAC
TCGTGGAAGAGGTGGCGCGAGCGTAGGCGGAGTCCGCTAAACTCGTCATT
GGACTTCACGAAGAGATATCTACGCCGACCTGCTTCATGTTCCAACTGAA
ATGACGGCAACCACAACGAACCCAGTAGGGGACGGAGAGGGGCTCATTCC
ATCACTGGCACACTCGTGGAAGAGGTGGCGCGAGCGTAGGCGGAGTCCGC
TAAACTCGTCATTGGACTTCACGAAGCGTGTGGTGGCCTTAGCAGGAGAT
AATGTTGCCGTTAGAAGTGGCGTGCTCTACGTCAATGACCGCCCAGCGAA
CGAACACCGACGCTCCAGCTATCTACTAGGACCAACGAAGGTACCGAAGG
ACCATATCGTTGTGCTTGGAGACAACAGAGACGAGAGTTTTGACTCTCAC
GTCTGGGGGCCACTCCCGGTTCGGAACGTGATAGGGTGCGCAAGGGCGCG
ATATTGGCCGTTTATCCGAGCGGCTTGGCTCGGGAGAGATATCCCACCTT
GACGTGTGGTGGCCTTAGCAGGAGATAATGTTGCCGTTAGAAGTGGCGTG
CTCTACGTCAATGACCGCCCAGCGAACGAACACCGACGCTCCAGCTATCT
ACTAGGACCAACGAAGGTACCGAAGGACCATATCGTTGTGCTTGGAGACA
ACAGAGACGAGAGTTTTGACTCTCACGTCTGGGGGCCACTCCCGGTTCGG
AACGTGATAGGGTGCGCAAGGGCGCGATATTGGCCGTTTATCCGAGCGGC
TTGGCTCGGGAGAGATATCCCACCTTGA
back to top