mRNA_P-lacustris_contig999.16267.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig999.16267.1
Unique NamemRNA_P-lacustris_contig999.16267.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
BLAST of mRNA_P-lacustris_contig999.16267.1 vs. uniprot
Match: D8LMG4_ECTSI (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMG4_ECTSI)

HSP 1 Score: 212 bits (540), Expect = 2.460e-68
Identity = 106/142 (74.65%), Postives = 121/142 (85.21%), Query Frame = 1
Query:    1 RNDEEDDIVTFIGSPRLAYNAESKSNGRGLYVNTNLAIQSEWRNAQDADAASELQRQVSPVTIVFDLPDGSQADQEFQLGQTVEVLKSFIESEFGIPMSSQELYLGSVLMMDPMSLLDYPEIDGTGDVLIVVEGEMNEETKK 426
            + DEEDD+V F+GSPR   NAE KS+G+GLY++TNL   S  R  QD  A +  QRQV+ VT+VFDLPDGSQADQEFQLGQTVEVLKSF+ESEFGIPMS QELYLGSVLMMDPM+LLDYPE+DG G+VLIVVEGEMNE+TKK
Sbjct:   18 KTDEEDDVVAFVGSPRFTRNAEMKSSGQGLYLDTNLVRGSVSREVQDVHADNGFQRQVAVVTVVFDLPDGSQADQEFQLGQTVEVLKSFVESEFGIPMSCQELYLGSVLMMDPMTLLDYPEVDGAGNVLIVVEGEMNEDTKK 159          
BLAST of mRNA_P-lacustris_contig999.16267.1 vs. uniprot
Match: A0A6V1REP9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1REP9_HETAK)

HSP 1 Score: 109 bits (273), Expect = 3.090e-27
Identity = 54/87 (62.07%), Postives = 67/87 (77.01%), Query Frame = 1
Query:  166 RQVSPVTIVFDLPDGSQADQEFQLGQTVEVLKSFIESEFGIPMSSQELYLGSVLMMDPMSLLDYPEIDGTGDVLIVVEGEMNEETKK 426
            RQ + VT+VF+LPDGS AD+EF LGQTVE LKS++E EF IPM  QEL L   ++MDPMSLLDY EI+   +V I V+GE+ EE+KK
Sbjct:  123 RQQTTVTVVFELPDGSTADKEFMLGQTVEFLKSYVEGEFDIPMGQQELLLNGKVLMDPMSLLDYSEINPNEEVFISVQGELGEESKK 209          
BLAST of mRNA_P-lacustris_contig999.16267.1 vs. uniprot
Match: A0A7S2RY85_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RY85_9STRA)

HSP 1 Score: 103 bits (258), Expect = 7.880e-26
Identity = 58/117 (49.57%), Postives = 79/117 (67.52%), Query Frame = 1
Query:   85 GLYVNTNLAIQSEWR-NAQDADAASELQRQVSPVTIVFDLPDGSQADQEFQLGQTVEVLKSFIESEFGIPMSSQELYLGSVL--MMDPMSLLDYPEIDGTGDVLIVVEGEMNEETKK 426
            GL ++ +LA  S+     Q+ D    LQR   PV +VFDLPDGSQ + +FQ+GQT+EVLKSF+ SE GIPM  Q+L+L  +   +MDP++LLDY +ID   +VL+ VEG M+   KK
Sbjct:   21 GLGLDLSLASASKGSPRLQEEDLV--LQRATEPVIVVFDLPDGSQVEHKFQMGQTIEVLKSFVASECGIPMGGQDLFLEGLQQPLMDPLTLLDYSQIDPASEVLVRVEGTMHMSAKK 135          
BLAST of mRNA_P-lacustris_contig999.16267.1 vs. uniprot
Match: F0YBA1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YBA1_AURAN)

HSP 1 Score: 103 bits (256), Expect = 3.050e-25
Identity = 62/141 (43.97%), Postives = 87/141 (61.70%), Query Frame = 1
Query:   13 EDDIVTFIGSPRLAYNAESKS--NGRGLYVNTNLAIQSEWRNAQDADAASELQRQV-SPVTIVFDLPDGSQADQEFQLGQTVEVLKSFIESEFGIPMSSQELYLGSVLMMDPMSLLDYPEIDGTGDVLIVVEGEMNEETKK 426
            +DD VT +GS  L   AE K+    RGL ++   A+    RN +       ++R + + V +VF+LPDGS+ ++ F++G TVEVLKSF+E EF IPM  Q LYL   LM+DP+SL DYP ID   D  + V GE+ E+ +K
Sbjct:   22 DDDYVTAVGSA-LPSAAEPKAALGLRGLDIS---AVVKSERNPRPCAEHERVERALDAQVLVVFELPDGSEGEKHFKMGHTVEVLKSFVEEEFEIPMGVQSLYLDETLMLDPLSLSDYPAIDPARDCFVRVGGEIPEQAQK 158          
BLAST of mRNA_P-lacustris_contig999.16267.1 vs. uniprot
Match: A0A8J2SIH4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SIH4_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.720e-24
Identity = 55/142 (38.73%), Postives = 84/142 (59.15%), Query Frame = 1
Query:    1 RNDEEDDIVTFIGSPRLAYNAESKSNGRGLYVNTNLAIQSEWRNAQDADAASELQRQVSPVTIVFDLPDGSQADQEFQLGQTVEVLKSFIESEFGIPMSSQELYLGSVLMMDPMSLLDYPEIDGTGDVLIVVEGEMNEETKK 426
            R D  DD++  I    ++  AE K    G+ +    ++    RNA++ +    ++R  +PV +VF+LPDGS+ ++ F+LGQTVEVLK+F+E EF I MS+  LYLG   M DP SL D+P +      ++ V GE+ E  +K
Sbjct:    7 RVDSRDDLLATISPKLISPGAEPKPRSIGIDM---ASLAKSERNAENTEEDDIIKRLDAPVLVVFELPDGSEGEKTFKLGQTVEVLKAFVEDEFEIDMSASRLYLGDEEMPDPFSLSDFPSVSPRKACVVRVAGEVPERAQK 145          
BLAST of mRNA_P-lacustris_contig999.16267.1 vs. uniprot
Match: A0A7S2HLV2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HLV2_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 2.520e-23
Identity = 60/139 (43.17%), Postives = 85/139 (61.15%), Query Frame = 1
Query:    1 RNDEEDDIVTFIGSPRLAYNAESKSNGRGLYVNTNLAIQSEWRNAQDADAASELQ---RQVSPVTIVFDLPDGSQADQEFQLGQTVEVLKSFIESEFGIPMSSQELYL--GSVLMMDPMSLLDYPEIDGTGDVLIVVEG 402
            ++ ++DD+   I           K N R + +  +L  Q++  N Q +D   E Q   R  +  TI+F+LPDGS    EFQ+GQTV+VLKS+I SE GIPM+ Q LYL   + +++DPM+LLDYPEID   ++LI VEG
Sbjct:   24 KDGDDDDMAFAIIPDATPEGLPRKVNPRLIGLGLDLT-QAKQPNDQGSDQTREAQIERRNNTVATILFELPDGSMVQNEFQMGQTVQVLKSYIASEVGIPMAQQSLYLETSTDMLLDPMTLLDYPEIDPMDEILIRVEG 161          
BLAST of mRNA_P-lacustris_contig999.16267.1 vs. uniprot
Match: A0A7S2D6F3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D6F3_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 4.600e-23
Identity = 49/82 (59.76%), Postives = 61/82 (74.39%), Query Frame = 1
Query:  175 SPVTIVFDLPDGSQADQEFQLGQTVEVLKSFIESEFGIPMSSQELYL----GSVLMMDPMSLLDYPEIDGTGDVLIVVEGEM 408
            +PV +VFDLPDGS  + EF +GQ+VEVLKS+I SE GI M  Q+L+L    GSVL+MDPMSL DYP+I    + +I VEGEM
Sbjct:   31 TPVLVVFDLPDGSSVESEFAIGQSVEVLKSYIASECGIQMGDQQLFLEAADGSVLLMDPMSLSDYPQISAGSENIIRVEGEM 112          
BLAST of mRNA_P-lacustris_contig999.16267.1 vs. uniprot
Match: A0A482RPU6_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RPU6_9ARCH)

HSP 1 Score: 88.2 bits (217), Expect = 1.470e-19
Identity = 51/126 (40.48%), Postives = 75/126 (59.52%), Query Frame = 1
Query:    1 RNDEEDDIVTFIGSPRLAYNAESKSNGRGLYVNTNLAIQSEWRNAQDADAASELQRQVSPVTIVFDLPDGSQADQEFQLGQTVEVLKSFIESEFGIPMSSQELYLGSV--LMMDPMSLLDYPEIDG 372
            +NDE + I    G   +     +    RG+ +N  LA +++ R         E       + +VFDLPDGSQ +  F+LGQ+VEVLKSF+ESE+GIPM++Q ++L S    M++P+SLLDY E+ G
Sbjct:   23 KNDELNVIAVCGGHDDITQPQVTSPLLRGMSLNLTLAAEAKARLNDPVAVQEEF------INVVFDLPDGSQGEGNFKLGQSVEVLKSFVESEYGIPMATQRMFLNSSEKQMLNPLSLLDYAEVKG 142          
BLAST of mRNA_P-lacustris_contig999.16267.1 vs. uniprot
Match: A0A485K463_9STRA (Aste57867_941 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K463_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.990e-17
Identity = 41/95 (43.16%), Postives = 66/95 (69.47%), Query Frame = 1
Query:  127 RNAQDADAASELQR----QVSPVTIVFDLPDGSQADQEFQLGQTVEVLKSFIESEFGIPMSSQELYLGSVLMMDPMSLLDYPEIDGTGDVLIVVE 399
            ++ ++ D  S+++     Q   ++I F+LPD S+A Q+F+ GQTV VLKS++ +EF +PM+S +L LG V+++DP SL DYPE++    V IVV+
Sbjct:    8 QSVKEVDCESKVEEARRLQEEEISITFELPDESEAQQQFKKGQTVAVLKSYLSTEFDLPMTSIKLMLGDVVLVDPYSLTDYPEMERFDAVRIVVK 102          
BLAST of mRNA_P-lacustris_contig999.16267.1 vs. uniprot
Match: A0A024TXM3_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TXM3_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 2.260e-13
Identity = 38/84 (45.24%), Postives = 54/84 (64.29%), Query Frame = 1
Query:  145 DAASELQRQVSPVTIVFDLPDGSQADQEFQLGQTVEVLKSFIESEFGIPMSSQELYLGSVLMMDPMSLLDYPEIDGTGDVLIVV 396
            D A  LQ +   + I F+LPD S+A Q+F+ GQTV VLKSF+E+EF + M S  L    V+++DP SL DYP+ +   +  +VV
Sbjct:   20 DDARRLQEE--DIEITFELPDQSEARQKFKKGQTVMVLKSFLETEFDLHMPSIRLVHNDVVLLDPYSLTDYPDFEHNDEARVVV 101          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig999.16267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D8LMG4_ECTSI2.460e-6874.65Ubiquitin-like domain-containing protein n=1 Tax=E... [more]
A0A6V1REP9_HETAK3.090e-2762.07Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2RY85_9STRA7.880e-2649.57Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
F0YBA1_AURAN3.050e-2543.97Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A8J2SIH4_9STRA1.720e-2438.73Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2HLV2_9STRA2.520e-2343.17Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2D6F3_9STRA4.600e-2359.76Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A482RPU6_9ARCH1.470e-1940.48Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A485K463_9STRA1.990e-1743.16Aste57867_941 protein n=1 Tax=Aphanomyces stellatu... [more]
A0A024TXM3_9STRA2.260e-1345.24Ubiquitin-like domain-containing protein n=1 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig999contigP-lacustris_contig999:63008..64251 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score212.6
Seed ortholog evalue1.2e-52
Seed eggNOG ortholog2880.D8LMG4
Hectar predicted targeting categoryother localisation
EggNOG OGs2D08N@1,2SD77@2759
Ec32 ortholog descriptionUbiquitin-related domain
Ec32 orthologEc-05_002660.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size429
Cds size429
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig999.16267.1prot_P-lacustris_contig999.16267.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig999 63008..64251 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817429.749605-CDS-P-lacustris_contig999:63007..631931622817429.749605-CDS-P-lacustris_contig999:63007..63193Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig999 63008..63193 +
1693495062.3046055-CDS-P-lacustris_contig999:63007..631931693495062.3046055-CDS-P-lacustris_contig999:63007..63193Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig999 63008..63193 +
1622817429.7634752-CDS-P-lacustris_contig999:63499..635411622817429.7634752-CDS-P-lacustris_contig999:63499..63541Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig999 63500..63541 +
1693495062.3148046-CDS-P-lacustris_contig999:63499..635411693495062.3148046-CDS-P-lacustris_contig999:63499..63541Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig999 63500..63541 +
1622817429.7764142-CDS-P-lacustris_contig999:63872..639471622817429.7764142-CDS-P-lacustris_contig999:63872..63947Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig999 63873..63947 +
1693495062.3232665-CDS-P-lacustris_contig999:63872..639471693495062.3232665-CDS-P-lacustris_contig999:63872..63947Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig999 63873..63947 +
1622817429.7875412-CDS-P-lacustris_contig999:64125..642511622817429.7875412-CDS-P-lacustris_contig999:64125..64251Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig999 64126..64251 +
1693495062.3317344-CDS-P-lacustris_contig999:64125..642511693495062.3317344-CDS-P-lacustris_contig999:64125..64251Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig999 64126..64251 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig999.16267.1

>prot_P-lacustris_contig999.16267.1 ID=prot_P-lacustris_contig999.16267.1|Name=mRNA_P-lacustris_contig999.16267.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=143bp
RNDEEDDIVTFIGSPRLAYNAESKSNGRGLYVNTNLAIQSEWRNAQDADA
ASELQRQVSPVTIVFDLPDGSQADQEFQLGQTVEVLKSFIESEFGIPMSS
QELYLGSVLMMDPMSLLDYPEIDGTGDVLIVVEGEMNEETKK*
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mRNA from alignment at P-lacustris_contig999:63008..64251+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig999.16267.1 ID=mRNA_P-lacustris_contig999.16267.1|Name=mRNA_P-lacustris_contig999.16267.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1244bp|location=Sequence derived from alignment at P-lacustris_contig999:63008..64251+ (Pleurocladia lacustris SAG_25_93)
AGAAACGACGAAGAAGACGACATCGTAACTTTTATTGGTTCGCCACGTCT TGCTTACAATGCTGAATCGAAGTCGAACGGCCGAGGGCTATACGTCAATA CCAACCTCGCGATACAAAGCGAGTGGCGAAACGCTCAGGATGCGGACGCC GCCAGTGAGTTACAGAGGCAGGTTTCTCCGGTGACGGTGAGTACCTCGAT GGGCAGCAGTGATCATTATCTATAGGATCAGGGGGTTCACGTGCAAGCAA GGATACACCGAACGTCCAGGCTCTGCTCTCGCTTGAGCATGTGCTGCACT GGTAGCCTCAGTGAAATGCGTGGTAAGCTGACTCACACAAATATGGCAAA TTGCATAGAATTGGGATTATTTTTCCTCTCTAGCCACCATTCGTGTGGAT CTTTTGGCACGATCTTAATGTTTCTCTCGCGAAATACTAACAATGACATC GTGCATTGAAACGCAAACAAACATGCTCGCCATCGGTCCAAGATTGTTTT TGATCTACCGGACGGCAGTCAAGCGGACCAGGAGGTGAGCCACGCTGGAG GGTAGGGGCCGAGTCTAGGTGGCCAAGCTTTTCTCCCTTCATTTGCTGGG TGCGGAAGTATAGCGTGTCCCCGCTACTGTACGATGCCTACACTAGCGGG TAGAAGCGATAGTGAGCTTGGCGTAGCGCATTCGGAATCAATAAACCACC AATTTTGCTGTGCGTACAGAGTAGCAGTAGTAAAATATGATAGACGACGC TCCATTTATTCCAGTCTACATGGAACACAGATGAAGGCCTTGAACGCGCT TTATTGATTTCACTTCATTTTGACCTCCAAGCGCTCTACGCCATGTGTCT TGTTATCTCCCCAAGTTTCAACTGGGGCAAACCGTGGAGGTGCTCAAGAG CTTCATTGAGTCTGAATTTGGCATACCCATGTCTTCTCAGGTATGTACAC GGCTCGCGACGGTTGAGCCCTTACTAGCGAAGAAACAAGCGTGCTTTCGC AAGTCTTTCAAAAGGGCAAAACAATTAACTGTGTAACCCTTCCGCAACCA TCTCCCAGACCAGATGATCACGATCGTCCGTGAGAATAACACGCTCGCTG CATTTGTCTTTTCTGCAGGAGCTATACCTGGGATCGGTTTTGATGATGGA TCCAATGTCTCTCCTGGACTACCCGGAGATTGATGGCACGGGGGACGTGT TGATTGTTGTCGAAGGAGAAATGAACGAGGAAACGAAAAAATAG
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Coding sequence (CDS) from alignment at P-lacustris_contig999:63008..64251+

>mRNA_P-lacustris_contig999.16267.1 ID=mRNA_P-lacustris_contig999.16267.1|Name=mRNA_P-lacustris_contig999.16267.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=858bp|location=Sequence derived from alignment at P-lacustris_contig999:63008..64251+ (Pleurocladia lacustris SAG_25_93)
AGAAACGACGAAGAAGACGACATCGTAACTTTTATTGGTTCGCCACGTCT
TGCTTACAATGCTGAATCGAAGTCGAACGGCCGAGGGCTATACGTCAATA
CCAACCTCGCGATACAAAGCGAGTGGCGAAACGCTCAGGATGCGGACGCC
GCCAGTGAGTTACAGAGGCAGGTTTCTCCGGTGACGAGAAACGACGAAGA
AGACGACATCGTAACTTTTATTGGTTCGCCACGTCTTGCTTACAATGCTG
AATCGAAGTCGAACGGCCGAGGGCTATACGTCAATACCAACCTCGCGATA
CAAAGCGAGTGGCGAAACGCTCAGGATGCGGACGCCGCCAGTGAGTTACA
GAGGCAGGTTTCTCCGGTGACGATTGTTTTTGATCTACCGGACGGCAGTC
AAGCGGACCAGGAGATTGTTTTTGATCTACCGGACGGCAGTCAAGCGGAC
CAGGAGTTTCAACTGGGGCAAACCGTGGAGGTGCTCAAGAGCTTCATTGA
GTCTGAATTTGGCATACCCATGTCTTCTCAGTTTCAACTGGGGCAAACCG
TGGAGGTGCTCAAGAGCTTCATTGAGTCTGAATTTGGCATACCCATGTCT
TCTCAGGAGCTATACCTGGGATCGGTTTTGATGATGGATCCAATGTCTCT
CCTGGACTACCCGGAGATTGATGGCACGGGGGACGTGTTGATTGTTGTCG
AAGGAGAAATGAACGAGGAAACGAAAAAATAGGAGCTATACCTGGGATCG
GTTTTGATGATGGATCCAATGTCTCTCCTGGACTACCCGGAGATTGATGG
CACGGGGGACGTGTTGATTGTTGTCGAAGGAGAAATGAACGAGGAAACGA
AAAAATAG
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