mRNA_P-lacustris_contig998.16263.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig998.16263.1
Unique NamemRNA_P-lacustris_contig998.16263.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig998.16263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig998contigP-lacustris_contig998:60142..60831 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size184
Cds size183
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817429.3242958-CDS-P-lacustris_contig998:60141..602191622817429.3242958-CDS-P-lacustris_contig998:60141..60219Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig998 60142..60219 +
1693495061.9082432-CDS-P-lacustris_contig998:60141..602191693495061.9082432-CDS-P-lacustris_contig998:60141..60219Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig998 60142..60219 +
1622817429.3383422-CDS-P-lacustris_contig998:60726..608311622817429.3383422-CDS-P-lacustris_contig998:60726..60831Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig998 60727..60831 +
1693495061.9260368-CDS-P-lacustris_contig998:60726..608311693495061.9260368-CDS-P-lacustris_contig998:60726..60831Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig998 60727..60831 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig998.16263.1prot_P-lacustris_contig998.16263.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig998 60142..60831 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig998.16263.1

>prot_P-lacustris_contig998.16263.1 ID=prot_P-lacustris_contig998.16263.1|Name=mRNA_P-lacustris_contig998.16263.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=61bp
MRNLRLQMAGVPPRREKERLLQRQYMVKQRLDEGLSGGEAFKFLLRLVAT
HFDYEDRGDAL
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mRNA from alignment at P-lacustris_contig998:60142..60831+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig998.16263.1 ID=mRNA_P-lacustris_contig998.16263.1|Name=mRNA_P-lacustris_contig998.16263.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=690bp|location=Sequence derived from alignment at P-lacustris_contig998:60142..60831+ (Pleurocladia lacustris SAG_25_93)
ATGCGAAATCTTCGGCTTCAGATGGCGGGAGTGCCTCCGCGTCGGGAGAA
GGAGAGGCTTCTCCAACGTCAATACATGGTGAGACCATGTCCAGATTGAT
GAGCTCTCTTCGTTCCCCCACCCCAAGCCTCGTAGGGTCCCCCTTTGTCT
TCCGTGGCAGACTCCAACCGTGGTTGGATGTCGCGCAACAGTGTGCCGGT
AGTACACAATGGTCTCCCCCTTTCGTCCCAGTTGGCTCGCACGCGTCAGG
CTGAGTTGGAAGAGGCAGCGAAGTTGGTCGAGATAGCTCGCGTTCGAGAT
ATCGCCACCAACTACACGAAAACCAAGTTGCGTGAGATTAAAATCCACCC
CCGCATGCCATGGCAGCCAAGCCTTAAAAACGCGGTGCCACAGCTCCTAG
ACTCCATCTCTGCCGCGGTCCTCGACATTTTGCAACAAGCGGACCCGTTT
ATCGTGTTCGAAGACTCGGATAGTTGGTGTCGAGGATGGGAAAATCCTTT
ACGGAAGGCGATGATTTCAGCGGTTGTCACAGAGAAAGACACGACCGGAG
AACTGATTTCCTCAATTAACGACATGTTCACGCAGGTGAAGCAGAGGCTG
GATGAGGGCTTGAGCGGTGGAGAAGCCTTCAAGTTCCTCCTGCGGCTGGT
AGCGACACATTTCGACTACGAGGATCGAGGCGATGCCTTG
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Coding sequence (CDS) from alignment at P-lacustris_contig998:60142..60831+

>mRNA_P-lacustris_contig998.16263.1 ID=mRNA_P-lacustris_contig998.16263.1|Name=mRNA_P-lacustris_contig998.16263.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=366bp|location=Sequence derived from alignment at P-lacustris_contig998:60142..60831+ (Pleurocladia lacustris SAG_25_93)
ATGCGAAATCTTCGGCTTCAGATGGCGGGAGTGCCTCCGCGTCGGGAGAA
GGAGAGGCTTCTCCAACGTCAATACATGATGCGAAATCTTCGGCTTCAGA
TGGCGGGAGTGCCTCCGCGTCGGGAGAAGGAGAGGCTTCTCCAACGTCAA
TACATGGTGAAGCAGAGGCTGGATGAGGGCTTGAGCGGTGGAGAAGCCTT
CAAGTTCCTCCTGCGGCTGGTAGCGACACATTTCGACTACGAGGATCGAG
GCGATGCCTTGGTGAAGCAGAGGCTGGATGAGGGCTTGAGCGGTGGAGAA
GCCTTCAAGTTCCTCCTGCGGCTGGTAGCGACACATTTCGACTACGAGGA
TCGAGGCGATGCCTTG
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