mRNA_P-lacustris_contig996.16255.1 (mRNA) Pleurocladia lacustris SAG_25_93
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Overview
Homology
BLAST of mRNA_P-lacustris_contig996.16255.1 vs. uniprot
Match: D7G0T9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0T9_ECTSI) HSP 1 Score: 471 bits (1211), Expect = 1.980e-152 Identity = 306/507 (60.36%), Postives = 348/507 (68.64%), Query Frame = 2
Query: 86 MDADGTCLVVSPCNSCRINKNGVQACIMRKHNARLTAVKREELAARHRQCIKPDQAMTIFKLVDRDSGEESVEFARDMIFQRPCASCIHLKTCILGGHELTDWTP----GEGEDKKRKTASSLDQALSLLAPTSGEQ----HEQEQPSSKTRKVSDGYGRPSTTIPGQALKAARKSEGMAGLEEE-----GWPKRPKGRRASAPGVFEEASPYSATAGA-EGENGAAADAAETDEDVDVNDHACESNGAGIGSASGSSRISSRISSSTPLKNIASQLDALAVQEDLLLQQYQADMRHLDDAKASREKEILVAQAALEKIKATREKTKSDTAAQRKRMVTERERLTHLRCQEMIREEAEHRQKKDVLWSAIEPAIEPASQGAAEPAAASRDDGSSSDGALADMIASQLVVQTGLGHAHHPPSLAS---VGEESGAAPLLPPSPSASAASP-----ENLA-TGVAGAWGPSRSGTGEKLANGTLATGVTEAQEEASAVVSCSKDERAVA 1537
MD DGTCLVVSPCN+CRINKNGVQACIMRKHNARLTAVKR+ELAARHRQC+KPDQ MTIFKLVDR++GEESVE++ DMIFQRPCASCIHLKTCILGGHELTDWTP G KRK+AS+L++AL LL+P +GEQ H+Q+QPSSKTRKV+DGY +PS TIPG ALKAARKSEG EE W KGR+ SAP FEEA P A A E E AAADA +TDEDVDVNDHAC SNGA P ++IASQLDALA QEDLLLQQ++ADMRHLD+AKASREKEI VAQAALEKIKATRE TKS+TA QRKRMV ER+RLTHLRCQEM+REEAEHRQKKD +WSA+EPA+ A+ E + G S G AS+ V Q G G PP +S V E +A LL S SA A E +A G A A+ + G E+ + SA+VSCS +E A A
Sbjct: 1 MDVDGTCLVVSPCNNCRINKNGVQACIMRKHNARLTAVKRDELAARHRQCVKPDQTMTIFKLVDRNTGEESVEYSPDMIFQRPCASCIHLKTCILGGHELTDWTPEGGRGRASQNKRKSASTLEKALELLSPPAGEQQQHQHKQQQPSSKTRKVTDGYPKPSITIPGPALKAARKSEGATTAPEELGRSTRWSS--KGRKVSAPEAFEEAVPSPAAAAPPEDEFCAAADAVDTDEDVDVNDHACVSNGAVXXXXX---XXXXXXXXGAPQQSIASQLDALAAQEDLLLQQFRADMRHLDEAKASREKEIRVAQAALEKIKATRETTKSNTAEQRKRMVAERDRLTHLRCQEMMREEAEHRQKKDDMWSAVEPAMATATLPTEEAS------GYSFGGGSTATEASEWVAQPGDG----PPGASSPPGVDGEGRSAALLLASSSADAGQGGPGGGEAVAGRGDASAYEEASDGNAEEAPGSXXXXXXXXXXXDGSALVSCSVEETAAA 492
BLAST of mRNA_P-lacustris_contig996.16255.1 vs. uniprot
Match: D7G0U1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U1_ECTSI) HSP 1 Score: 115 bits (287), Expect = 5.360e-25 Identity = 48/105 (45.71%), Postives = 71/105 (67.62%), Query Frame = 2
Query: 86 MDADGTCLVVSPCNSCRINKNGVQACIMRKHNARLTAVKREELAARHRQCIKPDQAMTIFKLVDRDSGEESVEFARDMIFQRPCASCIHLKTCILGGHELTDWTP 400
MD DG L++ CN C NK + C+ R+HN R++ V+ +EL HRQC+KPDQA+TI+KL D ++ E+ +EF +IFQ C C+++K+C+ GH+L DW P
Sbjct: 1 MDQDGLFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVREDELTYSHRQCVKPDQAITIYKLHDHETNEDYLEFDEKIIFQTACRMCLNIKSCLREGHKLIDWRP 105
BLAST of mRNA_P-lacustris_contig996.16255.1 vs. uniprot
Match: A0A6H5LER2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LER2_9PHAE) HSP 1 Score: 101 bits (252), Expect = 1.310e-18 Identity = 43/97 (44.33%), Postives = 66/97 (68.04%), Query Frame = 2
Query: 86 MDADGTCLVVSPCNSCRINKNGVQACIMRKHNARLTAVKREELAARHRQCIKPDQAMTIFKLVDRDSGEESVEFARDMIFQRPCASCIHLKTCILGG 376
MD DG L++ CN C NK + C+ R+HN R++ V+ +EL HRQC+KPDQA+TI+KL D ++ E+ +EF ++IFQ C C+++K+C+ G
Sbjct: 1 MDQDGLFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVREDELTNSHRQCVKPDQAITIYKLHDHETNEDYLEFDEEIIFQTACRMCLNIKSCLRLG 97 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig996.16255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig996.16255.1 >prot_P-lacustris_contig996.16255.1 ID=prot_P-lacustris_contig996.16255.1|Name=mRNA_P-lacustris_contig996.16255.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=664bp MDADGTCLVVSPCNSCRINKNGVQACIMRKHNARLTAVKREELAARHRQCback to top mRNA from alignment at P-lacustris_contig996:69193..76121+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig996.16255.1 ID=mRNA_P-lacustris_contig996.16255.1|Name=mRNA_P-lacustris_contig996.16255.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=6929bp|location=Sequence derived from alignment at P-lacustris_contig996:69193..76121+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig996:69193..76121+ >mRNA_P-lacustris_contig996.16255.1 ID=mRNA_P-lacustris_contig996.16255.1|Name=mRNA_P-lacustris_contig996.16255.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=3984bp|location=Sequence derived from alignment at P-lacustris_contig996:69193..76121+ (Pleurocladia lacustris SAG_25_93)back to top |