mRNA_P-lacustris_contig996.16255.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig996.16255.1
Unique NamemRNA_P-lacustris_contig996.16255.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
BLAST of mRNA_P-lacustris_contig996.16255.1 vs. uniprot
Match: D7G0T9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0T9_ECTSI)

HSP 1 Score: 471 bits (1211), Expect = 1.980e-152
Identity = 306/507 (60.36%), Postives = 348/507 (68.64%), Query Frame = 2
Query:   86 MDADGTCLVVSPCNSCRINKNGVQACIMRKHNARLTAVKREELAARHRQCIKPDQAMTIFKLVDRDSGEESVEFARDMIFQRPCASCIHLKTCILGGHELTDWTP----GEGEDKKRKTASSLDQALSLLAPTSGEQ----HEQEQPSSKTRKVSDGYGRPSTTIPGQALKAARKSEGMAGLEEE-----GWPKRPKGRRASAPGVFEEASPYSATAGA-EGENGAAADAAETDEDVDVNDHACESNGAGIGSASGSSRISSRISSSTPLKNIASQLDALAVQEDLLLQQYQADMRHLDDAKASREKEILVAQAALEKIKATREKTKSDTAAQRKRMVTERERLTHLRCQEMIREEAEHRQKKDVLWSAIEPAIEPASQGAAEPAAASRDDGSSSDGALADMIASQLVVQTGLGHAHHPPSLAS---VGEESGAAPLLPPSPSASAASP-----ENLA-TGVAGAWGPSRSGTGEKLANGTLATGVTEAQEEASAVVSCSKDERAVA 1537
            MD DGTCLVVSPCN+CRINKNGVQACIMRKHNARLTAVKR+ELAARHRQC+KPDQ MTIFKLVDR++GEESVE++ DMIFQRPCASCIHLKTCILGGHELTDWTP    G     KRK+AS+L++AL LL+P +GEQ    H+Q+QPSSKTRKV+DGY +PS TIPG ALKAARKSEG     EE      W    KGR+ SAP  FEEA P  A A   E E  AAADA +TDEDVDVNDHAC SNGA                   P ++IASQLDALA QEDLLLQQ++ADMRHLD+AKASREKEI VAQAALEKIKATRE TKS+TA QRKRMV ER+RLTHLRCQEM+REEAEHRQKKD +WSA+EPA+  A+    E +      G S  G      AS+ V Q G G    PP  +S   V  E  +A LL  S SA A        E +A  G A A+  +  G  E+               + SA+VSCS +E A A
Sbjct:    1 MDVDGTCLVVSPCNNCRINKNGVQACIMRKHNARLTAVKRDELAARHRQCVKPDQTMTIFKLVDRNTGEESVEYSPDMIFQRPCASCIHLKTCILGGHELTDWTPEGGRGRASQNKRKSASTLEKALELLSPPAGEQQQHQHKQQQPSSKTRKVTDGYPKPSITIPGPALKAARKSEGATTAPEELGRSTRWSS--KGRKVSAPEAFEEAVPSPAAAAPPEDEFCAAADAVDTDEDVDVNDHACVSNGAVXXXXX---XXXXXXXXGAPQQSIASQLDALAAQEDLLLQQFRADMRHLDEAKASREKEIRVAQAALEKIKATRETTKSNTAEQRKRMVAERDRLTHLRCQEMMREEAEHRQKKDDMWSAVEPAMATATLPTEEAS------GYSFGGGSTATEASEWVAQPGDG----PPGASSPPGVDGEGRSAALLLASSSADAGQGGPGGGEAVAGRGDASAYEEASDGNAEEAPGSXXXXXXXXXXXDGSALVSCSVEETAAA 492          
BLAST of mRNA_P-lacustris_contig996.16255.1 vs. uniprot
Match: D7G0U1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U1_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 5.360e-25
Identity = 48/105 (45.71%), Postives = 71/105 (67.62%), Query Frame = 2
Query:   86 MDADGTCLVVSPCNSCRINKNGVQACIMRKHNARLTAVKREELAARHRQCIKPDQAMTIFKLVDRDSGEESVEFARDMIFQRPCASCIHLKTCILGGHELTDWTP 400
            MD DG  L++  CN C  NK   + C+ R+HN R++ V+ +EL   HRQC+KPDQA+TI+KL D ++ E+ +EF   +IFQ  C  C+++K+C+  GH+L DW P
Sbjct:    1 MDQDGLFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVREDELTYSHRQCVKPDQAITIYKLHDHETNEDYLEFDEKIIFQTACRMCLNIKSCLREGHKLIDWRP 105          
BLAST of mRNA_P-lacustris_contig996.16255.1 vs. uniprot
Match: A0A6H5LER2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LER2_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.310e-18
Identity = 43/97 (44.33%), Postives = 66/97 (68.04%), Query Frame = 2
Query:   86 MDADGTCLVVSPCNSCRINKNGVQACIMRKHNARLTAVKREELAARHRQCIKPDQAMTIFKLVDRDSGEESVEFARDMIFQRPCASCIHLKTCILGG 376
            MD DG  L++  CN C  NK   + C+ R+HN R++ V+ +EL   HRQC+KPDQA+TI+KL D ++ E+ +EF  ++IFQ  C  C+++K+C+  G
Sbjct:    1 MDQDGLFLMLKMCNGCSHNKGSWKKCMSRRHNPRMSTVREDELTNSHRQCVKPDQAITIYKLHDHETNEDYLEFDEEIIFQTACRMCLNIKSCLRLG 97          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig996.16255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G0T9_ECTSI1.980e-15260.36Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G0U1_ECTSI5.360e-2545.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LER2_9PHAE1.310e-1844.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig996contigP-lacustris_contig996:69193..76121 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-23_001520.1
Exons13
Model size2522
Cds size1992
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817428.0667555-UTR-P-lacustris_contig996:69192..692771622817428.0667555-UTR-P-lacustris_contig996:69192..69277Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig996 69193..69277 +
1693495060.811423-UTR-P-lacustris_contig996:69192..692771693495060.811423-UTR-P-lacustris_contig996:69192..69277Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig996 69193..69277 +
1622817428.2353384-UTR-P-lacustris_contig996:75676..761211622817428.2353384-UTR-P-lacustris_contig996:75676..76121Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig996 75677..76121 +
1693495060.9842606-UTR-P-lacustris_contig996:75676..761211693495060.9842606-UTR-P-lacustris_contig996:75676..76121Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig996 75677..76121 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817428.0802586-CDS-P-lacustris_contig996:69277..693371622817428.0802586-CDS-P-lacustris_contig996:69277..69337Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig996 69278..69337 +
1693495060.8274124-CDS-P-lacustris_contig996:69277..693371693495060.8274124-CDS-P-lacustris_contig996:69277..69337Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig996 69278..69337 +
1622817428.0923882-CDS-P-lacustris_contig996:69989..700941622817428.0923882-CDS-P-lacustris_contig996:69989..70094Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig996 69990..70094 +
1693495060.8386369-CDS-P-lacustris_contig996:69989..700941693495060.8386369-CDS-P-lacustris_contig996:69989..70094Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig996 69990..70094 +
1622817428.1038487-CDS-P-lacustris_contig996:70301..704091622817428.1038487-CDS-P-lacustris_contig996:70301..70409Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig996 70302..70409 +
1693495060.8507726-CDS-P-lacustris_contig996:70301..704091693495060.8507726-CDS-P-lacustris_contig996:70301..70409Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig996 70302..70409 +
1622817428.1149905-CDS-P-lacustris_contig996:70887..709441622817428.1149905-CDS-P-lacustris_contig996:70887..70944Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig996 70888..70944 +
1693495060.8635054-CDS-P-lacustris_contig996:70887..709441693495060.8635054-CDS-P-lacustris_contig996:70887..70944Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig996 70888..70944 +
1622817428.126382-CDS-P-lacustris_contig996:71622..717931622817428.126382-CDS-P-lacustris_contig996:71622..71793Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig996 71623..71793 +
1693495060.8750582-CDS-P-lacustris_contig996:71622..717931693495060.8750582-CDS-P-lacustris_contig996:71622..71793Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig996 71623..71793 +
1622817428.1366222-CDS-P-lacustris_contig996:72376..724781622817428.1366222-CDS-P-lacustris_contig996:72376..72478Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig996 72377..72478 +
1693495060.892593-CDS-P-lacustris_contig996:72376..724781693495060.892593-CDS-P-lacustris_contig996:72376..72478Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig996 72377..72478 +
1622817428.147567-CDS-P-lacustris_contig996:72967..732221622817428.147567-CDS-P-lacustris_contig996:72967..73222Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig996 72968..73222 +
1693495060.9087136-CDS-P-lacustris_contig996:72967..732221693495060.9087136-CDS-P-lacustris_contig996:72967..73222Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig996 72968..73222 +
1622817428.161595-CDS-P-lacustris_contig996:73852..739241622817428.161595-CDS-P-lacustris_contig996:73852..73924Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig996 73853..73924 +
1693495060.9214482-CDS-P-lacustris_contig996:73852..739241693495060.9214482-CDS-P-lacustris_contig996:73852..73924Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig996 73853..73924 +
1622817428.1776729-CDS-P-lacustris_contig996:74091..741691622817428.1776729-CDS-P-lacustris_contig996:74091..74169Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig996 74092..74169 +
1693495060.9324045-CDS-P-lacustris_contig996:74091..741691693495060.9324045-CDS-P-lacustris_contig996:74091..74169Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig996 74092..74169 +
1622817428.188844-CDS-P-lacustris_contig996:74494..748471622817428.188844-CDS-P-lacustris_contig996:74494..74847Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig996 74495..74847 +
1693495060.9423347-CDS-P-lacustris_contig996:74494..748471693495060.9423347-CDS-P-lacustris_contig996:74494..74847Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig996 74495..74847 +
1622817428.2004824-CDS-P-lacustris_contig996:74936..750271622817428.2004824-CDS-P-lacustris_contig996:74936..75027Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig996 74937..75027 +
1693495060.9518638-CDS-P-lacustris_contig996:74936..750271693495060.9518638-CDS-P-lacustris_contig996:74936..75027Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig996 74937..75027 +
1622817428.213716-CDS-P-lacustris_contig996:75123..753671622817428.213716-CDS-P-lacustris_contig996:75123..75367Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig996 75124..75367 +
1693495060.9613593-CDS-P-lacustris_contig996:75123..753671693495060.9613593-CDS-P-lacustris_contig996:75123..75367Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig996 75124..75367 +
1622817428.2245662-CDS-P-lacustris_contig996:75380..756761622817428.2245662-CDS-P-lacustris_contig996:75380..75676Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig996 75381..75676 +
1693495060.9739985-CDS-P-lacustris_contig996:75380..756761693495060.9739985-CDS-P-lacustris_contig996:75380..75676Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig996 75381..75676 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig996.16255.1prot_P-lacustris_contig996.16255.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig996 69278..75676 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig996.16255.1

>prot_P-lacustris_contig996.16255.1 ID=prot_P-lacustris_contig996.16255.1|Name=mRNA_P-lacustris_contig996.16255.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=664bp
MDADGTCLVVSPCNSCRINKNGVQACIMRKHNARLTAVKREELAARHRQC
IKPDQAMTIFKLVDRDSGEESVEFARDMIFQRPCASCIHLKTCILGGHEL
TDWTPGEGEDKKRKTASSLDQALSLLAPTSGEQHEQEQPSSKTRKVSDGY
GRPSTTIPGQALKAARKSEGMAGLEEEGWPKRPKGRRASAPGVFEEASPY
SATAGAEGENGAAADAAETDEDVDVNDHACESNGAGIGSASGSSRISSRI
SSSTPLKNIASQLDALAVQEDLLLQQYQADMRHLDDAKASREKEILVAQA
ALEKIKATREKTKSDTAAQRKRMVTERERLTHLRCQEMIREEAEHRQKKD
VLWSAIEPAIEPASQGAAEPAAASRDDGSSSDGALADMIASQLVVQTGLG
HAHHPPSLASVGEESGAAPLLPPSPSASAASPENLATGVAGAWGPSRSGT
GEKLANGTLATGVTEAQEEASAVVSCSKDERAVAVGSPPTVDGTAAIGGG
KEASAVEIVGGGSNGFAEAVVEGTDVVVEIRAVSTNSVDPAAVDVAAGLP
SATGAEVGSGPGGEPNAEEEEGRGSSMEVDESEEEVGLAADEEDAEGGHQ
ESDTQVMRVPSLDEEGLRSGGGTTIEEHGVGAAMGKTVSTGGSGRTTRHG
TRQGTRHGGVVLE*
back to top

mRNA from alignment at P-lacustris_contig996:69193..76121+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig996.16255.1 ID=mRNA_P-lacustris_contig996.16255.1|Name=mRNA_P-lacustris_contig996.16255.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=6929bp|location=Sequence derived from alignment at P-lacustris_contig996:69193..76121+ (Pleurocladia lacustris SAG_25_93)
GATGGTTTGAAAGCGGCGTGCTCTTGTTTGCCAAGAAGAGCTATTCTGCC AGACGTGCACAGTCCGTACCTGGACGCAACAAAGTATGGATGCCGACGGA ACATGCCTGGTAGTGTCTCCTTGTAATAGCTGCAGAATCAACAAGGTGAG CTGTGCATTCGAACTCCAGAACAAAGTACGCGGCAATGGGCACAAAATCT TGTTGGTCTGTCTGTCGTCAGCATGGCGACAGGTATGCGGCTCTTTGTAG CAAACGGTGAAGCTGCCGTGGTACACCTAGACAATCATAGTGGAAGGAAA CCGTCTAGGTTCACAAAGGCGCGCCCTTGAGCGGTGCTGCCGTCTGGCGC TCGCGACGTGTGTTGGGTTTATGTACGTGAACTTACAAGCCAGTTTTACC GTCCGCTATGACAGCACCTTGGAGGGGTCGACAACAGTACTCGGGGGCGA GATAGCGGTGGTTGGTTGTCGATTAGAGCCGGCGGCGCGGCCTGTGAGGG CTACAGGGGTTGGAATGGGTGACAACAATGGGCTATGATTGCTGAAGCCT CGGTCACGCTACCGGCCACCGACCTGCAGCGGAATCGGCCACGTGCCAAT TGGCCGCAGCGCCGGAGACGGAGATCCCCTGGTATTGGTTGACACCGAGA CGCGGGGCCCAGAAAAAGCGACTCAGAGCAGGCGAGACTTCCCTGGCTGA TGGATGCTGTCTCGTGATGTCACAAAGTTTGGTCGACCAACATGTTGCTC TGCGTACGCCTTGTCCTTGTGTGTACAAAATCCGGCCGCTTGAGCAGAAT GGCGTTCAGGCGTGCATCATGCGGAAACACAACGCGAGGCTGACCGCGGT GAAGAGGGAAGAACTCGCCGCGAGACACCGCCAGTGCATCAAACCCGACC AGGTGACCTTGGTTTTTCAAAGCCAATCAAAATGTCCCCGACGATCCCAG CACGTTGTTTTCGTCCGTCGGCAGTTTTCTTTCGTGCACATATGCCCACG AGGGGCGAGGCTCGTCCGCCGTACCGTGCAATTCTTGAGTGTACCGTAAC CGGCAGGAGGGGCCTCTCCGTATGTGCCGCCGCCTCTAATTCTGCTCTAC GCTGCCAAGGCGATGACGATCTTCAAGCTGGTGGATCGCGACAGCGGCGA GGAGAGCGTGGAGTTTGCCAGGGACATGATTTTCCAGAGGCCGTGCGCCA GCTGTATTCACCTCAAGGTGCGTCACACACAGGTCAAATCCCCGGCTGAA AGAGAGAGAGAATGTGTATGTTTGGGTCGTAGGGCACTTGCTAGATTCAA GTGATGCTGTTGGTCCCTCTCGGGTCTTGGAAGGAGTCCGGACGGCGGCA CGTTGAGACCAGTGCATCCAAAACGTGGCCGGTCTCGTTTCACGCTCCAA TACGGACAAAGCAACTCCCGCTGCATTCGAATGTATATGTAGCTTAGTAC ACCTCATGGGGCGACACTTGACTTCCATCCAGTGCTAAAACCTAGTTTAC TGGTATAACGATCTAATGTTACATCCCCGCCTTGAGCGACGATGTTTGCT CTGTCTCCTCCGCGCTCCCGGCTCTCGGTCGCCGCCTCGCCGCACGCACC CCGTACCCCTTCGAAAATCTTTCGTTTATTTCGCTCCTGTTAAAGTGTTC CGCTGTGTCATCCCTCTTCCAATATTTCTTGCTCGGCGATCATAGACCTG CATCCTCGGCGGGCACGAGCTCACGGACTGGACGCCGGGGGAGGGAGAGG ACGTACGCAGGTTTGGAGGAGAGCAAGTTGCGGCGTGTTTACCGTTTTGG CTCCAACTGTTTTACTGCTCAAGTGCTCTTGCACCTCCCACCCCTAGTTC CGGGTAGTTCCGGGCGTTCGCCTGCTTGTATATGCTCGAATCCGAGCCCC TTGGCCTTTTCTCTTGCCTGGGCTGGCTTGACTCGTAGAAAATGGTGACG GGATGGCTTCTCGCCACTCCTTTGCACACACCAGTAGCCTGCCAAACATA TCGCTTGCGGTAGGGTACTTTCACGCCGCTTCCTGCCCAAGTCCGCCACC CCTTTCTCCCGCCGCAAAGATGACAGCAGAGAGAGCTAAGTCGAGTCATT CGTGCAGCCGAAAGAAATGGAATATTTGAGTTTGAGACTGCTAAAGTGTT GCTTGTGGCTCGAGTACGCAAATGAGACGGGATGTGATTCATTTCGAGAG GAGTGTTTGGACAAAATGTCACCCCCCCCCCACCCCCACCCCTCCACCCC CACCCAAAATTTCAACGAGCCCGTGAATGTTGACGGCGCCTCTTTCAGGA GTAGCGAATAGTCGGCCACCCAGACCCTCAAATCCAGTGCGTTGTCGATG ATCAAACAACTCTGTAAAGCGAGCAGCAATGACTACGCCTCCTCTCCTGC TGTTTCTCGCAATTCTACCGCCCTCGCTAGAAGAAGCGGAAGACTGCGTC ATCGCTAGACCAAGCCCTGTCGCTGCTGGCACCAACGTCTGGGGAGCAAC ATGAGCAGGAACAGCCTTCGAGTAAGACGAGGAAGGTATCAGACGGCTAC GGGAGACCTTCGACAACAATCCCGGGACAGGCCTTGAAGGCTGCTCGTAA GGTAAAATTTACGCTTGTTCCCAGAGGAATGGGGTGTGTTTACCTGCCTC ATCGTACTGTCTATCGCGTTTCTCAGAATGTCAGGGTGCTGCTCACCCGT ATGCGCCCTTGCAGTCACATGTCGTATGATTTGGCTAATACCATCACGGG ACTATTTATTGTGTTGGGATTTTTTCTGAATTTGTCGGTTGAGTATTCTT ACAGAAGCCGCAGTAGCACCAGCAGTCGTGACGTGGTTGTGTTTCGTGCT CATGTTGTACGAGTAGACGGGATTGATAGCGGAAGCCTAAGCCTTCACCG CCGACCACGGATCTAAGAGATCGATCCGGCTATCTTGGTCTTGTCGTGGA ACAAAGCGAGCCTGTTGGCCTGCCGTCCCCGCACGACGCATGTGTGCAGC ACTGTTGTTGCTTTTGTTGCGGTTGTGGTTGTTGTTGTTGTTGTTGTCTT GATATTGAAAACCTCCCCTGACACCTGTCTCCCCTGATATTATGTGTTCC CGTCCAGGTCTTAGCTAGAGTACCATTCGACGTTGTCTTCGCCTGCCTCT TTTCGTGTTCGTGATTCGATCTGTTATTTTTCAGAGCGAGGGGATGGCAG GACTGGAGGAGGAAGGGTGGCCCAAGAGACCAAAGGGGCGAAGGGCCTCG GCTCCAGGGGTGTTTGAGGAGGCTTCACCATACTCGGTGAGAGATGGCGT AGGCTGACTGTTGCACTCATTGATCACGCGAGGGCTGCGTTTTGTTTCGT GTTTTTCATGAACGATAGCAGAGAATGGAGCGATGAGCAACGGGGCCGTT CTTTGAGAACGTATTGAAACTGTTTTGAAAGAATTCCTAGCCCGTAGGCT GAAACGCTTCAAATTGTCCGAATATTCCGGGCTATCGTATTTCTTGGATG TCATCAACTGCTGAAAAACCGGTCTATTTGTGTGGATGCTGATTTTCGTT CGTCGTGGTTTTTGCGTTATGGTGTATGAGAAATATATGTGCTACTTTAA GCACGCCAACCAACTACCATAGGTATTGACAACCCCTCCTGCTGCTCAAG AGTGGTCGGTGCTTGCACGTGAGGCCACTCCGGTCACAACATGAAGGCTT TTGATTTGTTCCTCCTGCTGAAGCCGGAAATTCCTTCTTACTCTCGGCTG CCTGGTTTGATTCCTTTCCCACCAGGCTACCGCCGGTGCCGAGGGTGAGA ATGGTGCTGCTGCCGACGCCGCTGAGACTGACGAAGACGTCGATGTCAAT GATCACGCCTGTGAGTCCAACGGTGCCGGAATTGGAAGCGCTAGCGGGAG CAGCAGGATCAGCAGCAGGATCAGCAGCAGCACTCCCCTGAAGAACATCG CGTCGCAGCTCGACGCATTGGCGGTGCAGGAGGATTTGCTGCTGCAGCAA TATCAGGCAGACATGCGGCATCTGGACGATGTGAGACCCGCGGGGTAGGA AGGACGTAGCATGGGTGTAGCTGGAGCGCGTAGAGAGGTTCGGGCTGGAG GAGTTGAGGGAACGCATGCGTGTTGAAGACGAGGCTTCATGATGCTCCTT GCTGCTGTTCAGCTGGAGTACTCACTAGGTCCATGTAAGGAGTTGCTGGC GCGGCGTGTGTGTTCATGGTCCTCTTCTTATTTTTTTCATTTTTTTTTTT GTCTCTTGAGGCTATGCTGAGTCTTGTCGTGTTTTGGAGAAAACTTACCT TGCTGTGCCTTTAGGACAACGGGCCCCCGCGAGGCTAGGTTCCAAGCGAC CTATGACTCCCACAAGCGTTGGGGATAGGCTCAAAACTTGCAGTTGAGCG ACGTTGAGGTTTGGAACCCGCAGCCACACAGATAGTGCCCGCACTCAAGA CCCTCTCGGTGTGGCTGAGGCTCGGGTTCTTGTTTTTCCTCGGCGGGCCG CCAACAGCCGCTGTACAGATTTGAATATGAAAGCTCTTATCCAGGAATCG CAAATTTCTTATAGGTCAAGTTCTTGAGCACGGGCGCTTCTGTGTGTTCC GACTTGGTTTCCTGGCCGAGCTGAATGGACCTCTTTCTCCCGCCCTCCCC GCGTTGGCAGGCCAAGGCCTCCAGGGAGAAAGAAATCCTGGTGGCGCAGG CTGCGCTGGAAAAGATCAAGGCGACCCGTGAGGTAGGACCTGCGCTGCGT TGCCGGCCGAACTCTGAATTGATATTATCGGGTGAACGTGATAGCATCGT GGTATAGTTTGGCGGGCGTAGGTTGTGTGTCAGGGTGAACGTAGGAAACC ATCGTCAAATGTCACACCTCGTGTTGATGTTCTATGCAATGACAAGCAGA AGACGAAGTCGGACACGGCGGCCCAGAGGAAGAGGATGGTGACGGAGAGG GAACGGCTGACTCACCTCCGGTGTCAGGTGAGGGGCGACATAACATTCGT ATAGTGTGCGGATAGGATGGAAATCGATTTCGTAGTGCTTACTCGCCTCG AAAAGCTCGCGGCAGCACGAATACGTATCTTTGCCCAGATCAGCGCAACC TATCTTTGAATAGTCTATTTGACGCTTGCCCTCACAAGTTCAATGGACGA ATGCATCTTCTGCTGGGAGGAAGATGCCCCAACCGTGGAAAGGTGTAAAA CATATTTTTCAAGATAAATATCTGCCACGTCGTTTCTGGGTGAAGCGAAA AAACAAACGTTATCTTGTGCACGTCCTGCTTTCGCACGTTTTTCTGCCCC AGGAAATGATTCGGGAAGAGGCCGAGCATCGGCAAAAAAAAGATGTTCTG TGGAGTGCCATCGAACCCGCGATAGAACCGGCCTCGCAAGGTGCGGCGGA ACCAGCGGCAGCAAGCAGAGATGACGGCAGCAGCAGCGACGGTGCCCTGG CGGATATGATCGCGTCGCAGTTGGTAGTTCAGACAGGCCTCGGACATGCC CATCATCCACCGTCACTGGCATCGGTGGGAGAAGAGAGCGGCGCAGCTCC GTTGCTACCACCGTCACCTTCTGCGTCAGCTGCGAGTCCCGAAAACCTTG CGACAGGGGTGGCAGGGGCATGGGGCCCTAGTAGGAGCGGCACAGGAGAA AAACTGTGTCGGGAAGTAGTGACACGGGTCTCAACCCGTGGTCGTTGCTG CACGGTGCGAAGGAGGCCGGCAGTAGTGGGGCGGCAACCCCCAGGGCGAA TGGAACTCTAGCAACAGGCGTTACGGAAGCGCAGGAAGAGGCTTCTGCTG TGGTGAGTTGCTCCAAGGACGAAAGAGCAGTGGCGGTGGCATCACCACCA GCGGCTACAGCGGCGGCATCATCGCCAGAGTCTTCAGCAGCGGCATCACC ATCCGCGCTTGAGGGTGAGGGCGACAGTGAGGTTGGGAGTCCCCCAACAG TGGATGGCACGGCTGCCATTGGGGGCGGGAAGGAGGCGAGTGCTGTTGAA ATTGTAGGAGGAGGCTCAAATGGTTTTGCCGAGGCTGTGGTTGAAGGAAC TGACGTCGTGGTGGAGATAAGGGCTGTTTCGACCAACTCGGTGGATCCTG CAGCGGTTGACGTTGCAGCAGGGCTGCCGTCGGCGACGGGGGCGGAAGTG GGGTCGGGACCGGGAGGTGAGCCGAGTCAGCCAAAAAGACGCAGAGGAAG AGGAGGGGCGTGGCAGCAGCATGGAAGTGGACGAAAGTGAGGAGGAAGTA GGGTTAGCAGCGGACGAAGAGGATGCGGAAGGAGGACACCAGGAAAGCGA TACCCAGGTGATGCGGGTGCCAAGTTTAGACGAGGAGGGGTTGCGAAGTG GTGGAGGTACTACTATCGAGGAACACGGAGTAGGGGCGGCTATGGGGAAG ACTGTAAGCACAGGCGGTAGCGGCAGGACCACCAGACACGGGACGAGGCA AGGCACGCGTCACGGGGGGGTAGTCTTGGAGTAGCTCTCACTAGGCAGTC TGTGGCTCACGGTAAATCTGCGGCTTATATCAGTGACCTGTTCCGCGCTG TTTGGAGTCTCTTGGATACTTCGGTGTAGACTATTGGTGTGGTTGTGCAT CAGCGTAGGGATGTGAATAAGAAGCTACGTGCACAAAGGTGTATCGTTAT CTGTTGTTTACAGTAAACTGCACGGAGTAAGGTAGCGCTGCGGCGCGTCG GGTATAGGATCGCACATGGTCGAAAATCGTTGCGCCATTGCCACATTTTG GATCCCGTTGGTGCACGTCGTACTTGACGATGGCATCGGTTCGCTGAGGA GATTTTGTGGCTGCAGATATCGCGAGTTTGTTCTGGTGTAGTAGCAAGGG CTTGGATCGGCGGGATCAGCTGTGCTACCCTTTCTTGGCCGATGTTATGT GACAGGTAGCGTTTAGTGTTTGCACCCAG
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig996:69193..76121+

>mRNA_P-lacustris_contig996.16255.1 ID=mRNA_P-lacustris_contig996.16255.1|Name=mRNA_P-lacustris_contig996.16255.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=3984bp|location=Sequence derived from alignment at P-lacustris_contig996:69193..76121+ (Pleurocladia lacustris SAG_25_93)
ATGGATGCCGACGGAACATGCCTGGTAGTGTCTCCTTGTAATAGCTGCAG
AATCAACAAGATGGATGCCGACGGAACATGCCTGGTAGTGTCTCCTTGTA
ATAGCTGCAGAATCAACAAGAATGGCGTTCAGGCGTGCATCATGCGGAAA
CACAACGCGAGGCTGACCGCGGTGAAGAGGGAAGAACTCGCCGCGAGACA
CCGCCAGTGCATCAAACCCGACCAGAATGGCGTTCAGGCGTGCATCATGC
GGAAACACAACGCGAGGCTGACCGCGGTGAAGAGGGAAGAACTCGCCGCG
AGACACCGCCAGTGCATCAAACCCGACCAGGCGATGACGATCTTCAAGCT
GGTGGATCGCGACAGCGGCGAGGAGAGCGTGGAGTTTGCCAGGGACATGA
TTTTCCAGAGGCCGTGCGCCAGCTGTATTCACCTCAAGGCGATGACGATC
TTCAAGCTGGTGGATCGCGACAGCGGCGAGGAGAGCGTGGAGTTTGCCAG
GGACATGATTTTCCAGAGGCCGTGCGCCAGCTGTATTCACCTCAAGACCT
GCATCCTCGGCGGGCACGAGCTCACGGACTGGACGCCGGGGGAGGGAGAG
GACACCTGCATCCTCGGCGGGCACGAGCTCACGGACTGGACGCCGGGGGA
GGGAGAGGACAAGAAGCGGAAGACTGCGTCATCGCTAGACCAAGCCCTGT
CGCTGCTGGCACCAACGTCTGGGGAGCAACATGAGCAGGAACAGCCTTCG
AGTAAGACGAGGAAGGTATCAGACGGCTACGGGAGACCTTCGACAACAAT
CCCGGGACAGGCCTTGAAGGCTGCTCGTAAGAAGAAGCGGAAGACTGCGT
CATCGCTAGACCAAGCCCTGTCGCTGCTGGCACCAACGTCTGGGGAGCAA
CATGAGCAGGAACAGCCTTCGAGTAAGACGAGGAAGGTATCAGACGGCTA
CGGGAGACCTTCGACAACAATCCCGGGACAGGCCTTGAAGGCTGCTCGTA
AGAGCGAGGGGATGGCAGGACTGGAGGAGGAAGGGTGGCCCAAGAGACCA
AAGGGGCGAAGGGCCTCGGCTCCAGGGGTGTTTGAGGAGGCTTCACCATA
CTCGAGCGAGGGGATGGCAGGACTGGAGGAGGAAGGGTGGCCCAAGAGAC
CAAAGGGGCGAAGGGCCTCGGCTCCAGGGGTGTTTGAGGAGGCTTCACCA
TACTCGGCTACCGCCGGTGCCGAGGGTGAGAATGGTGCTGCTGCCGACGC
CGCTGAGACTGACGAAGACGTCGATGTCAATGATCACGCCTGTGAGTCCA
ACGGTGCCGGAATTGGAAGCGCTAGCGGGAGCAGCAGGATCAGCAGCAGG
ATCAGCAGCAGCACTCCCCTGAAGAACATCGCGTCGCAGCTCGACGCATT
GGCGGTGCAGGAGGATTTGCTGCTGCAGCAATATCAGGCAGACATGCGGC
ATCTGGACGATGCTACCGCCGGTGCCGAGGGTGAGAATGGTGCTGCTGCC
GACGCCGCTGAGACTGACGAAGACGTCGATGTCAATGATCACGCCTGTGA
GTCCAACGGTGCCGGAATTGGAAGCGCTAGCGGGAGCAGCAGGATCAGCA
GCAGGATCAGCAGCAGCACTCCCCTGAAGAACATCGCGTCGCAGCTCGAC
GCATTGGCGGTGCAGGAGGATTTGCTGCTGCAGCAATATCAGGCAGACAT
GCGGCATCTGGACGATGCCAAGGCCTCCAGGGAGAAAGAAATCCTGGTGG
CGCAGGCTGCGCTGGAAAAGATCAAGGCGACCCGTGAGGCCAAGGCCTCC
AGGGAGAAAGAAATCCTGGTGGCGCAGGCTGCGCTGGAAAAGATCAAGGC
GACCCGTGAGAAGACGAAGTCGGACACGGCGGCCCAGAGGAAGAGGATGG
TGACGGAGAGGGAACGGCTGACTCACCTCCGGTGTCAGAAGACGAAGTCG
GACACGGCGGCCCAGAGGAAGAGGATGGTGACGGAGAGGGAACGGCTGAC
TCACCTCCGGTGTCAGGAAATGATTCGGGAAGAGGCCGAGCATCGGCAAA
AAAAAGATGTTCTGTGGAGTGCCATCGAACCCGCGATAGAACCGGCCTCG
CAAGGTGCGGCGGAACCAGCGGCAGCAAGCAGAGATGACGGCAGCAGCAG
CGACGGTGCCCTGGCGGATATGATCGCGTCGCAGTTGGTAGTTCAGACAG
GCCTCGGACATGCCCATCATCCACCGTCACTGGCATCGGTGGGAGAAGAG
AGCGGCGCAGCTCCGTTGCTACCACCGTCACCTTCTGCGTCAGCTGCGAG
TCCCGAAAACCTTGCGACAGGGGTGGCAGGGGCATGGGGCCCTAGTAGGA
GCGGCACAGGAGAAAAACTGAAATGATTCGGGAAGAGGCCGAGCATCGGC
AAAAAAAAGATGTTCTGTGGAGTGCCATCGAACCCGCGATAGAACCGGCC
TCGCAAGGTGCGGCGGAACCAGCGGCAGCAAGCAGAGATGACGGCAGCAG
CAGCGACGGTGCCCTGGCGGATATGATCGCGTCGCAGTTGGTAGTTCAGA
CAGGCCTCGGACATGCCCATCATCCACCGTCACTGGCATCGGTGGGAGAA
GAGAGCGGCGCAGCTCCGTTGCTACCACCGTCACCTTCTGCGTCAGCTGC
GAGTCCCGAAAACCTTGCGACAGGGGTGGCAGGGGCATGGGGCCCTAGTA
GGAGCGGCACAGGAGAAAAACTGGCGAATGGAACTCTAGCAACAGGCGTT
ACGGAAGCGCAGGAAGAGGCTTCTGCTGTGGTGAGTTGCTCCAAGGACGA
AAGAGCAGTGGCGGGCGAATGGAACTCTAGCAACAGGCGTTACGGAAGCG
CAGGAAGAGGCTTCTGCTGTGGTGAGTTGCTCCAAGGACGAAAGAGCAGT
GGCGGTTGGGAGTCCCCCAACAGTGGATGGCACGGCTGCCATTGGGGGCG
GGAAGGAGGCGAGTGCTGTTGAAATTGTAGGAGGAGGCTCAAATGGTTTT
GCCGAGGCTGTGGTTGAAGGAACTGACGTCGTGGTGGAGATAAGGGCTGT
TTCGACCAACTCGGTGGATCCTGCAGCGGTTGACGTTGCAGCAGGGCTGC
CGTCGGCGACGGGGGCGGAAGTGGGGTCGGGACCGGGAGGTGAGCCGAGT
TGGGAGTCCCCCAACAGTGGATGGCACGGCTGCCATTGGGGGCGGGAAGG
AGGCGAGTGCTGTTGAAATTGTAGGAGGAGGCTCAAATGGTTTTGCCGAG
GCTGTGGTTGAAGGAACTGACGTCGTGGTGGAGATAAGGGCTGTTTCGAC
CAACTCGGTGGATCCTGCAGCGGTTGACGTTGCAGCAGGGCTGCCGTCGG
CGACGGGGGCGGAAGTGGGGTCGGGACCGGGAGGTGAGCCGAACGCAGAG
GAAGAGGAGGGGCGTGGCAGCAGCATGGAAGTGGACGAAAGTGAGGAGGA
AGTAGGGTTAGCAGCGGACGAAGAGGATGCGGAAGGAGGACACCAGGAAA
GCGATACCCAGGTGATGCGGGTGCCAAGTTTAGACGAGGAGGGGTTGCGA
AGTGGTGGAGGTACTACTATCGAGGAACACGGAGTAGGGGCGGCTATGGG
GAAGACTGTAAGCACAGGCGGTAGCGGCAGGACCACCAGACACGGGACGA
GGCAAGGCACGCGTCACGGGGGGGTAGTCTTGGAGTAGACGCAGAGGAAG
AGGAGGGGCGTGGCAGCAGCATGGAAGTGGACGAAAGTGAGGAGGAAGTA
GGGTTAGCAGCGGACGAAGAGGATGCGGAAGGAGGACACCAGGAAAGCGA
TACCCAGGTGATGCGGGTGCCAAGTTTAGACGAGGAGGGGTTGCGAAGTG
GTGGAGGTACTACTATCGAGGAACACGGAGTAGGGGCGGCTATGGGGAAG
ACTGTAAGCACAGGCGGTAGCGGCAGGACCACCAGACACGGGACGAGGCA
AGGCACGCGTCACGGGGGGGTAGTCTTGGAGTAG
back to top