mRNA_P-lacustris_contig995.16243.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig995.16243.1
Unique NamemRNA_P-lacustris_contig995.16243.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig995.16243.1 vs. uniprot
Match: A0A126X144_SACJA (Putative LOV domain-containing protein n=3 Tax=Saccharina japonica TaxID=88149 RepID=A0A126X144_SACJA)

HSP 1 Score: 58.9 bits (141), Expect = 5.860e-6
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = 2 
Query:    2 AHGQVANHVGVMCEVNEMTPVVFHRLLHR 88
            AHGQVANHVGV+CEVN+M P VFHRLLHR
Sbjct:  379 AHGQVANHVGVLCEVNQMPPAVFHRLLHR 407
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BLAST of mRNA_P-lacustris_contig995.16243.1 vs. uniprot
Match: A0A6H5K3S9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3S9_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 7.180e-6
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = 2 
Query:    2 AHGQVANHVGVMCEVNEMTPVVFHRLLHR 88
            +HGQVANHVGVMCEVN+M P VFHRLLHR
Sbjct:  591 SHGQVANHVGVMCEVNQMPPAVFHRLLHR 619
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BLAST of mRNA_P-lacustris_contig995.16243.1 vs. uniprot
Match: D7FQI9_ECTSI (Aureochrome 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQI9_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 1.160e-5
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 2 
Query:    2 AHGQVANHVGVMCEVNEMTPVVFHRLLHR 88
            +HGQ ANHVGVMCEVN+M P VFHRLLHR
Sbjct:  188 SHGQAANHVGVMCEVNQMPPAVFHRLLHR 216
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BLAST of mRNA_P-lacustris_contig995.16243.1 vs. uniprot
Match: A0A126WUW4_9PHAE (Putative LOV domain-containing protein n=1 Tax=Punctaria latifolia TaxID=90013 RepID=A0A126WUW4_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.260e-5
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = 2 
Query:    2 AHGQVANHVGVMCEVNEMTPVVFHRLLHR 88
            AHGQVANHVGVMCEV++M P VFHRLLHR
Sbjct:  208 AHGQVANHVGVMCEVSQMPPPVFHRLLHR 236
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BLAST of mRNA_P-lacustris_contig995.16243.1 vs. uniprot
Match: A0A126WZ47_SARFS (Putative LOV domain-containing protein n=1 Tax=Sargassum fusiforme TaxID=590727 RepID=A0A126WZ47_SARFS)

HSP 1 Score: 55.8 bits (133), Expect = 3.480e-5
Identity = 23/29 (79.31%), Postives = 27/29 (93.10%), Query Frame = 2 
Query:    2 AHGQVANHVGVMCEVNEMTPVVFHRLLHR 88
            AHGQVANHVGV+CEVN+M P +FH+LLHR
Sbjct:  176 AHGQVANHVGVLCEVNQMPPSMFHKLLHR 204
[Close]
BLAST of mRNA_P-lacustris_contig995.16243.1 vs. uniprot
Match: A0A126X4A8_9PHAE (Putative LOV domain-containing protein n=5 Tax=Sargassum TaxID=3015 RepID=A0A126X4A8_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 6.510e-5
Identity = 23/29 (79.31%), Postives = 27/29 (93.10%), Query Frame = 2 
Query:    2 AHGQVANHVGVMCEVNEMTPVVFHRLLHR 88
            AHGQVANHVGV+CEVN+M P +FH+LLHR
Sbjct:  502 AHGQVANHVGVLCEVNQMPPSMFHKLLHR 530
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig995.16243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A126X144_SACJA5.860e-686.21Putative LOV domain-containing protein n=3 Tax=Sac... [more]
A0A6H5K3S9_9PHAE7.180e-686.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQI9_ECTSI1.160e-582.76Aureochrome 5 n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A126WUW4_9PHAE1.260e-586.21Putative LOV domain-containing protein n=1 Tax=Pun... [more]
A0A126WZ47_SARFS3.480e-579.31Putative LOV domain-containing protein n=1 Tax=Sar... [more]
A0A126X4A8_9PHAE6.510e-579.31Putative LOV domain-containing protein n=5 Tax=Sar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig995contigP-lacustris_contig995:69212..70245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size1034
Cds size726
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig995.16243.1prot_P-lacustris_contig995.16243.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig995 69366..70091 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817426.4422386-UTR-P-lacustris_contig995:69211..693651622817426.4422386-UTR-P-lacustris_contig995:69211..69365Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig995 69212..69365 +
1693495059.5826693-UTR-P-lacustris_contig995:69211..693651693495059.5826693-UTR-P-lacustris_contig995:69211..69365Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig995 69212..69365 +
1622817426.4649613-UTR-P-lacustris_contig995:70091..702451622817426.4649613-UTR-P-lacustris_contig995:70091..70245Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig995 70092..70245 +
1693495059.6071947-UTR-P-lacustris_contig995:70091..702451693495059.6071947-UTR-P-lacustris_contig995:70091..70245Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig995 70092..70245 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817426.4528944-CDS-P-lacustris_contig995:69365..700911622817426.4528944-CDS-P-lacustris_contig995:69365..70091Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig995 69366..70091 +
1693495059.5962021-CDS-P-lacustris_contig995:69365..700911693495059.5962021-CDS-P-lacustris_contig995:69365..70091Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig995 69366..70091 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig995.16243.1

>prot_P-lacustris_contig995.16243.1 ID=prot_P-lacustris_contig995.16243.1|Name=mRNA_P-lacustris_contig995.16243.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=242bp
MSFRTRLPCRLSDAVSSWLHGVKVPRRVSVLIKPGVVTGVTQCSTWILDL
SPYYLRCRRRVRGSRPRSAWCAPSVLQQKSSKMNVSCLIRNYNSVPFIRP
PPSPRPSPFTLTLLRIHTKQHPVFLTSTAPTHPLYCCPRLQSAGYPSLRA
SYTTTPALTGTKTNTTTSAARWRWVPPPDRRRAAPKPEVAPRRPLGTSRT
RRRWQRRVPRRSSIDCAGPARPRRFATTSLPRLESWRPCVR*
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mRNA from alignment at P-lacustris_contig995:69212..70245+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig995.16243.1 ID=mRNA_P-lacustris_contig995.16243.1|Name=mRNA_P-lacustris_contig995.16243.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1034bp|location=Sequence derived from alignment at P-lacustris_contig995:69212..70245+ (Pleurocladia lacustris SAG_25_93)
TGCGCACGGGCAAGTCGCGAACCACGTGGGTGTCATGTGCGAGGTCAACG
AGATGACACCGGTGGTGTTCCATCGTCTCCTGCACAGGTAAACGGAGAAA
CGCTTGTGCATTTTTTTCGATCAGCGTGCTTGCCGATTTTTCCTCATCCA
GTAGATGTCGTTTCGAACTCGTCTTCCTTGCCGCTTGTCTGATGCCGTGT
CCTCGTGGCTGCATGGCGTAAAAGTGCCCCGGCGTGTTTCGGTTTTGATC
AAGCCAGGGGTCGTGACAGGAGTCACACAATGCTCCACATGGATTTTGGA
TTTGTCGCCCTACTACCTTCGCTGTCGACGAAGAGTTCGTGGGAGTCGCC
CACGCTCGGCTTGGTGTGCGCCCTCTGTCTTGCAACAAAAATCGTCCAAA
ATGAACGTCTCATGTCTCATACGAAATTACAATAGCGTTCCGTTCATCCG
CCCGCCTCCATCTCCTAGACCATCACCTTTCACTCTCACCCTATTGCGCA
TACATACGAAACAACACCCGGTATTCCTTACTTCCACCGCTCCCACACAC
CCTCTGTATTGTTGCCCGCGCCTCCAATCGGCAGGGTACCCCTCCCTGAG
AGCCTCCTACACGACGACTCCGGCTCTGACGGGGACGAAGACGAATACCA
CTACGAGTGCAGCGCGGTGGCGGTGGGTTCCTCCGCCCGATCGTCGTCGA
GCGGCCCCAAAGCCCGAAGTAGCTCCTCGTCGGCCTCTGGGGACGTCCAG
AACACGGCGGCGGTGGCAGCGGCGGGTTCCCCGAAGGTCGTCGATCGACT
GCGCCGGACCCGCGCGGCCTCGGCGGTTCGCAACAACGTCTCTGCCTCGC
CTTGAGTCTTGGCGACCGTGCGTCCGTTAATTCATGATTCACTAAGGCGG
CCGACGAAGCTTTACTTGCTCTCTTCGGCGGTGGAAGTGTTGACGTTCGC
ACCGGAGCGACAAGCTCGGGTTTGCCCTGCCTTCACCCCGGTTTTTATCA
ATTGGTATTGCGTACCCTGAAGTCATGGTTTCGA
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Coding sequence (CDS) from alignment at P-lacustris_contig995:69212..70245+

>mRNA_P-lacustris_contig995.16243.1 ID=mRNA_P-lacustris_contig995.16243.1|Name=mRNA_P-lacustris_contig995.16243.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1452bp|location=Sequence derived from alignment at P-lacustris_contig995:69212..70245+ (Pleurocladia lacustris SAG_25_93)
ATGTCGTTTCGAACTCGTCTTCCTTGCCGCTTGTCTGATGCCGTGTCCTC
GTGGCTGCATGGCGTAAAAGTGCCCCGGCGTGTTTCGGTTTTGATCAAGC
CAGGGGTCGTGACAGGAGTCACACAATGCTCCACATGGATTTTGGATTTG
TCGCCCTACTACCTTCGCTGTCGACGAAGAGTTCGTGGGAGTCGCCCACG
CTCGGCTTGGTGTGCGCCCTCTGTCTTGCAACAAAAATCGTCCAAAATGA
ACGTCTCATGTCTCATACGAAATTACAATAGCGTTCCGTTCATCCGCCCG
CCTCCATCTCCTAGACCATCACCTTTCACTCTCACCCTATTGCGCATACA
TACGAAACAACACCCGGTATTCCTTACTTCCACCGCTCCCACACACCCTC
TGTATTGTTGCCCGCGCCTCCAATCGGCAGGGTACCCCTCCCTGAGAGCC
TCCTACACGACGACTCCGGCTCTGACGGGGACGAAGACGAATACCACTAC
GAGTGCAGCGCGGTGGCGGTGGGTTCCTCCGCCCGATCGTCGTCGAGCGG
CCCCAAAGCCCGAAGTAGCTCCTCGTCGGCCTCTGGGGACGTCCAGAACA
CGGCGGCGGTGGCAGCGGCGGGTTCCCCGAAGGTCGTCGATCGACTGCGC
CGGACCCGCGCGGCCTCGGCGGTTCGCAACAACGTCTCTGCCTCGCCTTG
AGTCTTGGCGACCGTGCGTCCGTTAAATGTCGTTTCGAACTCGTCTTCCT
TGCCGCTTGTCTGATGCCGTGTCCTCGTGGCTGCATGGCGTAAAAGTGCC
CCGGCGTGTTTCGGTTTTGATCAAGCCAGGGGTCGTGACAGGAGTCACAC
AATGCTCCACATGGATTTTGGATTTGTCGCCCTACTACCTTCGCTGTCGA
CGAAGAGTTCGTGGGAGTCGCCCACGCTCGGCTTGGTGTGCGCCCTCTGT
CTTGCAACAAAAATCGTCCAAAATGAACGTCTCATGTCTCATACGAAATT
ACAATAGCGTTCCGTTCATCCGCCCGCCTCCATCTCCTAGACCATCACCT
TTCACTCTCACCCTATTGCGCATACATACGAAACAACACCCGGTATTCCT
TACTTCCACCGCTCCCACACACCCTCTGTATTGTTGCCCGCGCCTCCAAT
CGGCAGGGTACCCCTCCCTGAGAGCCTCCTACACGACGACTCCGGCTCTG
ACGGGGACGAAGACGAATACCACTACGAGTGCAGCGCGGTGGCGGTGGGT
TCCTCCGCCCGATCGTCGTCGAGCGGCCCCAAAGCCCGAAGTAGCTCCTC
GTCGGCCTCTGGGGACGTCCAGAACACGGCGGCGGTGGCAGCGGCGGGTT
CCCCGAAGGTCGTCGATCGACTGCGCCGGACCCGCGCGGCCTCGGCGGTT
CGCAACAACGTCTCTGCCTCGCCTTGAGTCTTGGCGACCGTGCGTCCGTT
AA
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