mRNA_P-lacustris_contig994.16233.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig994.16233.1
Unique NamemRNA_P-lacustris_contig994.16233.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig994.16233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig994contigP-lacustris_contig994:45933..48023 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size344
Cds size342
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig994.16233.1prot_P-lacustris_contig994.16233.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig994 45933..48023 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817425.268413-CDS-P-lacustris_contig994:45932..460121622817425.268413-CDS-P-lacustris_contig994:45932..46012Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig994 45933..46012 -
1693495058.7366397-CDS-P-lacustris_contig994:45932..460121693495058.7366397-CDS-P-lacustris_contig994:45932..46012Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig994 45933..46012 -
1622817425.2801824-CDS-P-lacustris_contig994:46376..464571622817425.2801824-CDS-P-lacustris_contig994:46376..46457Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig994 46377..46457 -
1693495058.7502007-CDS-P-lacustris_contig994:46376..464571693495058.7502007-CDS-P-lacustris_contig994:46376..46457Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig994 46377..46457 -
1622817425.2912903-CDS-P-lacustris_contig994:47842..480231622817425.2912903-CDS-P-lacustris_contig994:47842..48023Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig994 47843..48023 -
1693495058.7589576-CDS-P-lacustris_contig994:47842..480231693495058.7589576-CDS-P-lacustris_contig994:47842..48023Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig994 47843..48023 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig994.16233.1

>prot_P-lacustris_contig994.16233.1 ID=prot_P-lacustris_contig994.16233.1|Name=mRNA_P-lacustris_contig994.16233.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=114bp
DRREPDGTTSGWDHEKTAELVVILKNLRDKSSLQEVLVGAAEVGAAYGPR
GFTNENRVNGGKADYPEGASLPSGGVSKGTRKRKAEGGEASIKKIKKRKR
KENPEKFLQESAAG
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mRNA from alignment at P-lacustris_contig994:45933..48023-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig994.16233.1 ID=mRNA_P-lacustris_contig994.16233.1|Name=mRNA_P-lacustris_contig994.16233.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=2091bp|location=Sequence derived from alignment at P-lacustris_contig994:45933..48023- (Pleurocladia lacustris SAG_25_93)
GACCGCAGGGAGCCGGATGGCACGACCTCAGGGTGGGACCACGAGAAGAC
CGCCGAGCTGGTGGTAATTTTGAAGAACCTGAGAGATAAGTCATCTTTAC
AGGAGGTCTTGGTCGGTGCGGCCGAGGTCGGAGCGGCATACGGGCCGCGA
GGATTCACCAACGAGAACAGGGTCAATGGAGGTGAGAGAGAAACCTATCG
CCAATCTTTTCTCGTGTTGTTGCTGTTGTTTCTGGTGGTAGTCTTGTTGT
TTCGAATTGAGTGAATGAATGGGTGAGAGAGAGTGAAATGGTGCGTTTGT
TTGTCATGTGTCTGATGTTTTATTCGTTGATTGATACCGCCCCCCTGTTT
GGCCGAGAAACAAGTTCATTGAAGGTTGACATTTTCGCGTCGGTACAGTA
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTTTAGTGTTGCCGTTGCCT
GGCAGTCGAGTAGCTTCCGCCCCCTCACCCGTCTCAAGCAGCTCCCTTTT
CGCCCAATATCATGCTACCGTCGCGTGCATTGAGTGAAATGTGGTTGTTA
TCTCCCCTGGGTCAAGATTCAATGATGTCGTTGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTGTTCTCTTTGCCACGTAGCTATTTTTCGAGTT
CCCCGGTGTGCCCCTCAGTGAGTATAATCCCCGGTATAGCTACCCCCTTT
GGTCAAAATCTTGCTGTTGACGTTTCTGCCGACGCCGGCCGAAGCAGGGC
GGGCGGGAGGTGAGCGATCGCTGATTGCCTCCGATAGTTCTTGTTGCTGT
TGCTGTTGCTGTTGATGTTTTTGCCGATGCCGATCGGAGCAGGGCTCAAG
GGAGGTGGGCGATCGCTGGTTGCCTCCGATGTTGTGGTTGCGGTGGGCAG
TTCTTGTGGTTGACAGCTTGTGTTCGTCGTTGGATCAAAATGACACACAA
GGGATGCGCTGCACCTTCGCTGTAGGGAGGGGTCTTCTTCCGCCACCCGT
TTTGCGTCTGTCGTATTCAACGGCGCCAGTCTCTTTTGCCACATACGTCG
AATACGCAGCGCATCTGTCTCCGTGGGCTTGCTTGAGCGGCGCCAGGGGT
TTGTCGTGGCCCAGTGGCCCCATCCGCCCGCCCCCGACAGCCCCAACGTT
ACAAATTGGCAGCGATTGCCCGCGAATGTTTGGGGGGGTGATGCCGGTGG
GGGGTTATTTTTCACGCCCGCGAGGGATCGGTACCGAACATTAACTGCTG
TTTAACTCTACTCAAAGTCTCCAACATTAGCAGCGCACTCACTCCCGCCA
TAGAAAAACTAATCCGCAAACCCTGAGACATGAACCCTCTGTCGTCTCTA
GTTCAACGGCAACCAAAGCCTTTGCGTTACCTCGCCCGCATAGCCGGCAG
CCCCGCACCCCCCTGCCCCCTGTTTGTATTGGCAGCGATCGCTCGCGTGC
TGATTTTGCCGGCGGTCTCGAGTCGAACGTCCAATCGTCCTTACCTCCAC
ACCAATTATCTCTACATCCCCCCGCCCCCGTTTTTTCTCGTCTATCCCAT
CTCGGTCCACACACAGGAAAAGCAGATTACCCCGAGGGAGCGTCCCTCCC
AAGTGGCGGCGTCTCCAAGGGTACCCGTAAGCGCAAGGCAGAAGGAGGTG
AAAACTAATCCGCAAACCCTGAGACATGAACCCGCTGTCATCTCTAGTTC
AACGGCAACCAAAGCCTTTGCGTTACCTCGCCCGCATAGCCGGCAGCCCC
CCCCCCCCTGTTTGTATTGGCAGCGGTGGCAGCCCCCGCCCCCGCCCCCC
TGTTTGTATTGGCAGCGGTGGCTCGAAACGTTAGATAGATGTGCCGGTGC
TGTTCCTTGACCCAACATGCCGAGCTAGAGCTTGTTTTGCGGTGTTGATA
GCGAACACTTCTCCGCGAATTTCCGCTGCTCCCTCATTCGTCCACCCGCG
TGCTCGGCAATCCCCTCCACTCAGCTGTCCCTCTCGCATCTTGACTTGAT
CGTCGTTTCAGGGGAGGCATCGATAAAAAAAATAAAAAAACGCAAGCGCA
AGGAGAATCCAGAGAAGTTCTTGCAAGAGAGCGCGGCCGGG
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Coding sequence (CDS) from alignment at P-lacustris_contig994:45933..48023-

>mRNA_P-lacustris_contig994.16233.1 ID=mRNA_P-lacustris_contig994.16233.1|Name=mRNA_P-lacustris_contig994.16233.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=684bp|location=Sequence derived from alignment at P-lacustris_contig994:45933..48023- (Pleurocladia lacustris SAG_25_93)
GACCGCAGGGAGCCGGATGGCACGACCTCAGGGTGGGACCACGAGAAGAC
CGCCGAGCTGGTGGTAATTTTGAAGAACCTGAGAGATAAGTCATCTTTAC
AGGAGGTCTTGGTCGGTGCGGCCGAGGTCGGAGCGGCATACGGGCCGCGA
GGATTCACCAACGAGAACAGGGTCAATGGAGGACCGCAGGGAGCCGGATG
GCACGACCTCAGGGTGGGACCACGAGAAGACCGCCGAGCTGGTGGTAATT
TTGAAGAACCTGAGAGATAAGTCATCTTTACAGGAGGTCTTGGTCGGTGC
GGCCGAGGTCGGAGCGGCATACGGGCCGCGAGGATTCACCAACGAGAACA
GGGTCAATGGAGGAAAAGCAGATTACCCCGAGGGAGCGTCCCTCCCAAGT
GGCGGCGTCTCCAAGGGTACCCGTAAGCGCAAGGCAGAAGGAGGAAAAGC
AGATTACCCCGAGGGAGCGTCCCTCCCAAGTGGCGGCGTCTCCAAGGGTA
CCCGTAAGCGCAAGGCAGAAGGAGGGGAGGCATCGATAAAAAAAATAAAA
AAACGCAAGCGCAAGGAGAATCCAGAGAAGTTCTTGCAAGAGAGCGCGGC
CGGGGGGAGGCATCGATAAAAAAAATAAAAAAACGCAAGCGCAAGGAGAA
TCCAGAGAAGTTCTTGCAAGAGAGCGCGGCCGGG
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