mRNA_P-lacustris_contig994.16229.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig994.16229.1
Unique NamemRNA_P-lacustris_contig994.16229.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig994.16229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig994contigP-lacustris_contig994:25012..25948 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size937
Cds size546
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig994.16229.1prot_P-lacustris_contig994.16229.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig994 25252..25797 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817425.3256638-UTR-P-lacustris_contig994:25011..252511622817425.3256638-UTR-P-lacustris_contig994:25011..25251Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig994 25012..25251 +
1693495058.7678316-UTR-P-lacustris_contig994:25011..252511693495058.7678316-UTR-P-lacustris_contig994:25011..25251Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig994 25012..25251 +
1622817425.3490045-UTR-P-lacustris_contig994:25797..259481622817425.3490045-UTR-P-lacustris_contig994:25797..25948Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig994 25798..25948 +
1693495058.7908957-UTR-P-lacustris_contig994:25797..259481693495058.7908957-UTR-P-lacustris_contig994:25797..25948Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig994 25798..25948 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817425.3371124-CDS-P-lacustris_contig994:25251..257971622817425.3371124-CDS-P-lacustris_contig994:25251..25797Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig994 25252..25797 +
1693495058.778058-CDS-P-lacustris_contig994:25251..257971693495058.778058-CDS-P-lacustris_contig994:25251..25797Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig994 25252..25797 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig994.16229.1

>prot_P-lacustris_contig994.16229.1 ID=prot_P-lacustris_contig994.16229.1|Name=mRNA_P-lacustris_contig994.16229.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=182bp
MGIVSRLSLCRRVFCLCTICRLEFISTRRCGNCAHLIAQVLPSVAGDRAA
GTKVAPPLISGTPFMGIAISSKEKVVHNRYTCYFHVHWIRSSERIICGSR
LTSVRVRRESSCRWPLQCTAILFFCNIQMEKLCGVICSLNLILFSAASIA
FSSPCVFSQKNRSRLLQKMEQDKSPHPIDQN*
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mRNA from alignment at P-lacustris_contig994:25012..25948+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig994.16229.1 ID=mRNA_P-lacustris_contig994.16229.1|Name=mRNA_P-lacustris_contig994.16229.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=937bp|location=Sequence derived from alignment at P-lacustris_contig994:25012..25948+ (Pleurocladia lacustris SAG_25_93)
TAGCAGCAGCTGTAACACCATGCTCGGCTTCATATTTGTATGTTCGATAT
TTGATCGATGATCGATGAATCGATGATCGATGTTGGCGTTTGTCTCTGTC
TGTTTGGTTGCGAGATTTCCTTGAAAATTTGGTCATCTGAAGGAGATTTT
TTGTGTGAGGATCTCGCCATCAAGATCGTTCTGAAGATCTTTGTATGAAG
ATCGTTATGTGAATCGTTCTGCTAATACAACCGCATCGTCATGGGTATCG
TGTCCAGGCTGTCTCTGTGTCGCCGTGTCTTTTGTTTGTGTACGATATGT
CGTTTGGAGTTTATCTCAACGCGTCGTTGTGGTAACTGCGCTCATTTGAT
TGCTCAAGTTCTACCATCGGTGGCTGGGGATCGCGCAGCGGGTACTAAAG
TTGCCCCGCCCCTCATCTCCGGTACCCCGTTCATGGGAATTGCCATCTCG
AGCAAAGAGAAGGTGGTACATAACAGATACACCTGTTATTTTCATGTTCA
TTGGATTCGGAGTAGTGAGAGAATCATTTGTGGTAGTCGGTTGACAAGCG
TCAGGGTTCGTCGCGAATCTTCTTGCCGATGGCCCTTACAATGTACTGCA
ATTCTATTCTTCTGCAACATACAAATGGAAAAATTATGTGGTGTGATATG
TTCTTTGAATTTGATACTTTTTTCTGCCGCGTCTATTGCTTTCTCTTCTC
CTTGTGTTTTTTCTCAAAAAAATAGAAGCAGACTACTACAGAAAATGGAA
CAGGACAAAAGCCCCCACCCCATCGACCAAAACTAGCGGTCCTTTCCAGC
GGCATTTCTTTGTGTGTGGTACTATTTTGCTTGAGGAGTTTTTTTCGAGA
TAGATCGAGAAGTGGCGTACTAAATGCCCTCCGTTGCTGAGGGCGGAATC
CGTGGTGTCAGCAAAAGCAGGGTTAACCGCTCGAGGA
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Coding sequence (CDS) from alignment at P-lacustris_contig994:25012..25948+

>mRNA_P-lacustris_contig994.16229.1 ID=mRNA_P-lacustris_contig994.16229.1|Name=mRNA_P-lacustris_contig994.16229.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1092bp|location=Sequence derived from alignment at P-lacustris_contig994:25012..25948+ (Pleurocladia lacustris SAG_25_93)
ATGGGTATCGTGTCCAGGCTGTCTCTGTGTCGCCGTGTCTTTTGTTTGTG
TACGATATGTCGTTTGGAGTTTATCTCAACGCGTCGTTGTGGTAACTGCG
CTCATTTGATTGCTCAAGTTCTACCATCGGTGGCTGGGGATCGCGCAGCG
GGTACTAAAGTTGCCCCGCCCCTCATCTCCGGTACCCCGTTCATGGGAAT
TGCCATCTCGAGCAAAGAGAAGGTGGTACATAACAGATACACCTGTTATT
TTCATGTTCATTGGATTCGGAGTAGTGAGAGAATCATTTGTGGTAGTCGG
TTGACAAGCGTCAGGGTTCGTCGCGAATCTTCTTGCCGATGGCCCTTACA
ATGTACTGCAATTCTATTCTTCTGCAACATACAAATGGAAAAATTATGTG
GTGTGATATGTTCTTTGAATTTGATACTTTTTTCTGCCGCGTCTATTGCT
TTCTCTTCTCCTTGTGTTTTTTCTCAAAAAAATAGAAGCAGACTACTACA
GAAAATGGAACAGGACAAAAGCCCCCACCCCATCGACCAAAACTAGATGG
GTATCGTGTCCAGGCTGTCTCTGTGTCGCCGTGTCTTTTGTTTGTGTACG
ATATGTCGTTTGGAGTTTATCTCAACGCGTCGTTGTGGTAACTGCGCTCA
TTTGATTGCTCAAGTTCTACCATCGGTGGCTGGGGATCGCGCAGCGGGTA
CTAAAGTTGCCCCGCCCCTCATCTCCGGTACCCCGTTCATGGGAATTGCC
ATCTCGAGCAAAGAGAAGGTGGTACATAACAGATACACCTGTTATTTTCA
TGTTCATTGGATTCGGAGTAGTGAGAGAATCATTTGTGGTAGTCGGTTGA
CAAGCGTCAGGGTTCGTCGCGAATCTTCTTGCCGATGGCCCTTACAATGT
ACTGCAATTCTATTCTTCTGCAACATACAAATGGAAAAATTATGTGGTGT
GATATGTTCTTTGAATTTGATACTTTTTTCTGCCGCGTCTATTGCTTTCT
CTTCTCCTTGTGTTTTTTCTCAAAAAAATAGAAGCAGACTACTACAGAAA
ATGGAACAGGACAAAAGCCCCCACCCCATCGACCAAAACTAG
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