mRNA_P-lacustris_contig994.16226.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig994.16226.1
Unique NamemRNA_P-lacustris_contig994.16226.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig994.16226.1 vs. uniprot
Match: D7G0I3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0I3_ECTSI)

HSP 1 Score: 236 bits (603), Expect = 2.790e-73
Identity = 165/281 (58.72%), Postives = 186/281 (66.19%), Query Frame = 1 
Query:    1 ADFNYAREPNVDERNKLSRDIYRVEDSQLAEAIGLLEQRCPDAVVRDNEEGYFVVKIEALPSPVFWEVELYLRKRLCNQPDRTKKKIPTTYRPPPESMSRLSGRKRSNSG-----------GCGDDGNTGGGSRGESSNGVPSGDSSESRGIGTEVGGVSDGGLDQKRKTDDAGAAGATSAAVATMANGDSXXXXXXXXXXTTDGEVSDPASKPAAVAPGPEVPAPAGGDELEA-GIETETTTTADNAAAVMAWEEDLFLADTSFRETSEVVGFDAVSASG 807
            ADFNYAREPNVDERNKLSRDIYRVEDSQL EA+ LLEQRCP+AVVRD+EEGYFVVK+EALPSPVFWEVELYLRKRLCNQPDRTKKKIPTT+RPPP+SM+RLSGRKR N G           GC            E S+G   G+   S     EV   S     +KRKTDD     A+            XXXXXXXXXX+ +GE S  AS+PAAVAPGP   A  GGD L   G+ T+ +     AA  + WE+ LFLADTSFRE  + VG D  +A G
Sbjct:   78 ADFNYAREPNVDERNKLSRDIYRVEDSQLEEAVQLLEQRCPEAVVRDDEEGYFVVKVEALPSPVFWEVELYLRKRLCNQPDRTKKKIPTTFRPPPDSMARLSGRKRGNDGXXXXXXXXXXAGC------------ERSSGGRDGNGGPSTSPTPEV---SXXXXXKKRKTDDP----ASXXXXXXXXXXXXXXXXXXXXXXSVNGEESRAASEPAAVAPGPMPAATVGGDVLATRGVGTDESGLGSGAAEAV-WEDGLFLADTSFREAGDGVGIDVAAAGG 338
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig994.16226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0I3_ECTSI2.790e-7358.72Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig994contigP-lacustris_contig994:281..1619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score246.5
Seed ortholog evalue1.4e-62
Seed eggNOG ortholog2880.D7G0I3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.acetylation-dependent protein binding
EggNOG OGsCOG5076@1,KOG1474@2759
Ec32 ortholog descriptionBromodomain and extraterminal protein
Ec32 orthologEc-20_002430.1
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size819
Cds size819
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig994.16226.1prot_P-lacustris_contig994.16226.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig994 281..1619 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817425.436773-CDS-P-lacustris_contig994:280..4181622817425.436773-CDS-P-lacustris_contig994:280..418Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig994 281..418 +
1693495058.8295567-CDS-P-lacustris_contig994:280..4181693495058.8295567-CDS-P-lacustris_contig994:280..418Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig994 281..418 +
1622817425.4476914-CDS-P-lacustris_contig994:897..14411622817425.4476914-CDS-P-lacustris_contig994:897..1441Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig994 898..1441 +
1693495058.8417292-CDS-P-lacustris_contig994:897..14411693495058.8417292-CDS-P-lacustris_contig994:897..1441Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig994 898..1441 +
1622817425.4603684-CDS-P-lacustris_contig994:1482..16191622817425.4603684-CDS-P-lacustris_contig994:1482..1619Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig994 1483..1619 +
1693495058.8516765-CDS-P-lacustris_contig994:1482..16191693495058.8516765-CDS-P-lacustris_contig994:1482..1619Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig994 1483..1619 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig994.16226.1

>prot_P-lacustris_contig994.16226.1 ID=prot_P-lacustris_contig994.16226.1|Name=mRNA_P-lacustris_contig994.16226.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=273bp
ADFNYAREPNVDERNKLSRDIYRVEDSQLAEAIGLLEQRCPDAVVRDNEE
GYFVVKIEALPSPVFWEVELYLRKRLCNQPDRTKKKIPTTYRPPPESMSR
LSGRKRSNSGGCGDDGNTGGGSRGESSNGVPSGDSSESRGIGTEVGGVSD
GGLDQKRKTDDAGAAGATSAAVATMANGDSSHVVIAGGGGTTDGEVSDPA
SKPAAVAPGPEVPAPAGGDELEAGIETETTTTADNAAAVMAWEEDLFLAD
TSFRETSEVVGFDAVSASGARQ*
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mRNA from alignment at P-lacustris_contig994:281..1619+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig994.16226.1 ID=mRNA_P-lacustris_contig994.16226.1|Name=mRNA_P-lacustris_contig994.16226.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=1339bp|location=Sequence derived from alignment at P-lacustris_contig994:281..1619+ (Pleurocladia lacustris SAG_25_93)
GCAGATTTCAACTATGCGCGCGAGCCTAACGTGGACGAGCGCAACAAGCT
CAGCAGAGACATCTACCGGGTGGAAGATTCGCAGCTTGCGGAGGCTATTG
GGCTTCTGGAGCAGAGATGTCCAGATGCTGTCGTCAGGGTGAGCAAGCAT
AGCCTGTAAGAAACGATGGATGGGGCGCGGGGAAGCATAGCTAGCACTTG
TGGTTAAAGCTTTAGGTTCATTAGCAAAGGGCTCCATGAACAAAGGAATA
ACCTCGTGCTCAGCACCGTCGTTCGGCATCGCAGTACTCGCCCCCGCGAA
CCGGATCTCGCCGGTCCTTCCGGCGTAATGTTACGAGAGCGCTGCCGGTG
GTTTGCCAGAAATAACTTCCGGGAAAAATGTACTATTTTTAAACATGCTA
AGCCTCACTGGGCACCCATTTTTGTCGGAAACGGGCACAGAGACTGTTTT
ACGCGATATATGCCAGTCTTCTATAATCCAGAATAGCTTTTGGAGTGTGT
TATATGAACGAGCCCCGTCCTCCCCGTCTCTTACCCAAACCTGTGTTGGC
GTCCTTCCTTTCGACCGACGACGATGACGAACCGATTTTTTTTTTTTTTT
CTCACGCTTGTTCTCAGGACAACGAGGAAGGGTACTTCGTCGTGAAAATA
GAGGCCCTTCCCTCCCCCGTATTTTGGGAGGTAGAGCTGTACTTGAGAAA
GCGGCTGTGCAACCAGCCTGACCGCACCAAGAAGAAGATACCCACGACGT
ACAGGCCCCCGCCAGAATCCATGTCGAGACTCAGCGGCCGTAAGCGCAGC
AACAGCGGCGGCTGCGGCGACGATGGAAACACTGGCGGCGGTAGCAGAGG
GGAGAGTAGTAATGGCGTGCCGAGCGGGGACAGCAGTGAGAGCAGAGGCA
TTGGTACCGAGGTGGGCGGGGTCAGCGACGGAGGACTAGATCAGAAACGG
AAAACCGACGATGCTGGTGCTGCTGGTGCTACCAGTGCTGCTGTCGCCAC
GATGGCGAACGGGGACAGCAGTCATGTCGTCATTGCCGGCGGCGGTGGCA
CCACAGACGGCGAAGTAAGCGACCCCGCTTCCAAGCCCGCTGCCGTAGCA
CCCGGCCCGGAGGTTCCAGCACCGGCAGGCGGAGACGAGCTTGAGGCCGG
GATTGAAACAGGTGAACTTCCAGAGGGGACTGACGCCGCGGAGGCCTATC
AGAGACGACTACGACGGCAGACAATGCTGCCGCCGTCATGGCATGGGAGG
AAGACCTCTTTCTAGCTGACACCTCTTTCCGAGAAACTAGCGAGGTCGTT
GGCTTCGATGCGGTGTCGGCGTCTGGAGCGCGGCAGTAG
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Coding sequence (CDS) from alignment at P-lacustris_contig994:281..1619+

>mRNA_P-lacustris_contig994.16226.1 ID=mRNA_P-lacustris_contig994.16226.1|Name=mRNA_P-lacustris_contig994.16226.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1638bp|location=Sequence derived from alignment at P-lacustris_contig994:281..1619+ (Pleurocladia lacustris SAG_25_93)
GCAGATTTCAACTATGCGCGCGAGCCTAACGTGGACGAGCGCAACAAGCT
CAGCAGAGACATCTACCGGGTGGAAGATTCGCAGCTTGCGGAGGCTATTG
GGCTTCTGGAGCAGAGATGTCCAGATGCTGTCGTCAGGGCAGATTTCAAC
TATGCGCGCGAGCCTAACGTGGACGAGCGCAACAAGCTCAGCAGAGACAT
CTACCGGGTGGAAGATTCGCAGCTTGCGGAGGCTATTGGGCTTCTGGAGC
AGAGATGTCCAGATGCTGTCGTCAGGGACAACGAGGAAGGGTACTTCGTC
GTGAAAATAGAGGCCCTTCCCTCCCCCGTATTTTGGGAGGTAGAGCTGTA
CTTGAGAAAGCGGCTGTGCAACCAGCCTGACCGCACCAAGAAGAAGATAC
CCACGACGTACAGGCCCCCGCCAGAATCCATGTCGAGACTCAGCGGCCGT
AAGCGCAGCAACAGCGGCGGCTGCGGCGACGATGGAAACACTGGCGGCGG
TAGCAGAGGGGAGAGTAGTAATGGCGTGCCGAGCGGGGACAGCAGTGAGA
GCAGAGGCATTGGTACCGAGGTGGGCGGGGTCAGCGACGGAGGACTAGAT
CAGAAACGGAAAACCGACGATGCTGGTGCTGCTGGTGCTACCAGTGCTGC
TGTCGCCACGATGGCGAACGGGGACAGCAGTCATGTCGTCATTGCCGGCG
GCGGTGGCACCACAGACGGCGAAGTAAGCGACCCCGCTTCCAAGCCCGCT
GCCGTAGCACCCGGCCCGGAGGTTCCAGCACCGGCAGGCGGAGACGAGCT
TGAGGCCGGGATTGAAACAGGACAACGAGGAAGGGTACTTCGTCGTGAAA
ATAGAGGCCCTTCCCTCCCCCGTATTTTGGGAGGTAGAGCTGTACTTGAG
AAAGCGGCTGTGCAACCAGCCTGACCGCACCAAGAAGAAGATACCCACGA
CGTACAGGCCCCCGCCAGAATCCATGTCGAGACTCAGCGGCCGTAAGCGC
AGCAACAGCGGCGGCTGCGGCGACGATGGAAACACTGGCGGCGGTAGCAG
AGGGGAGAGTAGTAATGGCGTGCCGAGCGGGGACAGCAGTGAGAGCAGAG
GCATTGGTACCGAGGTGGGCGGGGTCAGCGACGGAGGACTAGATCAGAAA
CGGAAAACCGACGATGCTGGTGCTGCTGGTGCTACCAGTGCTGCTGTCGC
CACGATGGCGAACGGGGACAGCAGTCATGTCGTCATTGCCGGCGGCGGTG
GCACCACAGACGGCGAAGTAAGCGACCCCGCTTCCAAGCCCGCTGCCGTA
GCACCCGGCCCGGAGGTTCCAGCACCGGCAGGCGGAGACGAGCTTGAGGC
CGGGATTGAAACAGAGACGACTACGACGGCAGACAATGCTGCCGCCGTCA
TGGCATGGGAGGAAGACCTCTTTCTAGCTGACACCTCTTTCCGAGAAACT
AGCGAGGTCGTTGGCTTCGATGCGGTGTCGGCGTCTGGAGCGCGGCAGTA
GAGACGACTACGACGGCAGACAATGCTGCCGCCGTCATGGCATGGGAGGA
AGACCTCTTTCTAGCTGACACCTCTTTCCGAGAAACTAGCGAGGTCGTTG
GCTTCGATGCGGTGTCGGCGTCTGGAGCGCGGCAGTAG
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