mRNA_P-lacustris_contig990.16200.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig990.16200.1
Unique NamemRNA_P-lacustris_contig990.16200.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig990.16200.1 vs. uniprot
Match: D7FSL8_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSL8_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 1.450e-6
Identity = 21/39 (53.85%), Postives = 27/39 (69.23%), Query Frame = 2 
Query:  224 KPSFCRDHGQEGMIDPFSKKCTHRDCTKRPSFGVAGTKK 340
            +P FC  H + GMI+   K+C H  CTK+PSFG AG+KK
Sbjct:    2 RPEFCSQHAKPGMINVRKKRCCHPGCTKKPSFGTAGSKK 40
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig990.16200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSL8_ECTSI1.450e-653.85EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig990contigP-lacustris_contig990:9832..10171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size341
Cds size186
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817422.3916426-UTR-P-lacustris_contig990:9831..99851622817422.3916426-UTR-P-lacustris_contig990:9831..9985Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig990 9832..9985 +
1693495056.4622297-UTR-P-lacustris_contig990:9831..99851693495056.4622297-UTR-P-lacustris_contig990:9831..9985Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig990 9832..9985 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817422.404557-CDS-P-lacustris_contig990:9985..101711622817422.404557-CDS-P-lacustris_contig990:9985..10171Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig990 9986..10171 +
1693495056.4736044-CDS-P-lacustris_contig990:9985..101711693495056.4736044-CDS-P-lacustris_contig990:9985..10171Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig990 9986..10171 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig990.16200.1prot_P-lacustris_contig990.16200.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig990 9986..10171 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig990.16200.1

>prot_P-lacustris_contig990.16200.1 ID=prot_P-lacustris_contig990.16200.1|Name=mRNA_P-lacustris_contig990.16200.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=62bp
MMPSVRSQSGCSKQGTSGVEDSSKPSFCRDHGQEGMIDPFSKKCTHRDCT
KRPSFGVAGTKK
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mRNA from alignment at P-lacustris_contig990:9832..10171+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig990.16200.1 ID=mRNA_P-lacustris_contig990.16200.1|Name=mRNA_P-lacustris_contig990.16200.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=340bp|location=Sequence derived from alignment at P-lacustris_contig990:9832..10171+ (Pleurocladia lacustris SAG_25_93)
GCTGACCCCGATCCTGACACATCTTAGTTATAAAAGCACCGGAAGTCGTT
GTGCGAGTTCGGCGATACAGGAGCGGAGCGTAGCGCTGAGCTTTGGTGCT
GTATTTGGAACGGATTGACGCATTCAAAGGCGACGTTGCAGGCGATAATC
TACTATGATGCCTTCGGTGCGCTCCCAATCGGGTTGCTCGAAGCAGGGAA
CCTCGGGAGTAGAAGATTCGAGCAAGCCAAGCTTCTGCCGCGATCATGGG
CAGGAGGGGATGATCGACCCCTTCAGCAAGAAGTGCACACACCGGGACTG
CACAAAGCGGCCGTCGTTTGGCGTCGCGGGAACCAAGAAG
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Coding sequence (CDS) from alignment at P-lacustris_contig990:9832..10171+

>mRNA_P-lacustris_contig990.16200.1 ID=mRNA_P-lacustris_contig990.16200.1|Name=mRNA_P-lacustris_contig990.16200.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=372bp|location=Sequence derived from alignment at P-lacustris_contig990:9832..10171+ (Pleurocladia lacustris SAG_25_93)
ATGATGCCTTCGGTGCGCTCCCAATCGGGTTGCTCGAAGCAGGGAACCTC
GGGAGTAGAAGATTCGAGCAAGCCAAGCTTCTGCCGCGATCATGGGCAGG
AGGGGATGATCGACCCCTTCAGCAAGAAGTGCACACACCGGGACTGCACA
AAGCGGCCGTCGTTTGGCGTCGCGGGAACCAAGAAGATGATGCCTTCGGT
GCGCTCCCAATCGGGTTGCTCGAAGCAGGGAACCTCGGGAGTAGAAGATT
CGAGCAAGCCAAGCTTCTGCCGCGATCATGGGCAGGAGGGGATGATCGAC
CCCTTCAGCAAGAAGTGCACACACCGGGACTGCACAAAGCGGCCGTCGTT
TGGCGTCGCGGGAACCAAGAAG
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