mRNA_P-lacustris_contig99.16196.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig99.16196.1
Unique NamemRNA_P-lacustris_contig99.16196.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig99.16196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig99contigP-lacustris_contig99:243934..244359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size427
Cds size375
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817419.6482723-UTR-P-lacustris_contig99:243933..2439841622817419.6482723-UTR-P-lacustris_contig99:243933..243984Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig99 243934..243984 +
1693495054.2970757-UTR-P-lacustris_contig99:243933..2439841693495054.2970757-UTR-P-lacustris_contig99:243933..243984Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig99 243934..243984 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817419.6606376-CDS-P-lacustris_contig99:243984..2443591622817419.6606376-CDS-P-lacustris_contig99:243984..244359Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig99 243985..244359 +
1693495054.3073354-CDS-P-lacustris_contig99:243984..2443591693495054.3073354-CDS-P-lacustris_contig99:243984..244359Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig99 243985..244359 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig99.16196.1prot_P-lacustris_contig99.16196.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig99 243985..244359 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig99.16196.1

>prot_P-lacustris_contig99.16196.1 ID=prot_P-lacustris_contig99.16196.1|Name=mRNA_P-lacustris_contig99.16196.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=125bp
MIFNTGAFQWSMDAASASMLGFEQLPLSCVFKSSKNVVAGTTYPPRPHLA
LSTEDPRPEVTQMCFGGDSCPASPTRAVQAHAQPPLRRFSNPPKGNPTSL
SPCLNPNPSSSHHPNNNRCPPPLPH
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mRNA from alignment at P-lacustris_contig99:243934..244359+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig99.16196.1 ID=mRNA_P-lacustris_contig99.16196.1|Name=mRNA_P-lacustris_contig99.16196.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=426bp|location=Sequence derived from alignment at P-lacustris_contig99:243934..244359+ (Pleurocladia lacustris SAG_25_93)
GTTTCAAGTTTCATTTCACCCTGGTGCAGTAAAAAGCATGTCTGACCTCA
AATGATTTTCAATACCGGTGCTTTTCAATGGTCTATGGATGCGGCCAGTG
CGTCAATGTTGGGTTTTGAGCAGTTACCACTATCGTGTGTCTTCAAATCG
TCGAAAAACGTCGTTGCTGGAACTACGTACCCACCTAGACCGCATCTTGC
TCTATCCACTGAGGACCCACGACCCGAGGTTACGCAGATGTGCTTTGGTG
GAGATTCATGCCCAGCCAGCCCAACCCGTGCAGTACAAGCTCATGCCCAG
CCACCCCTACGCAGATTCAGCAACCCCCCCAAGGGCAACCCTACCAGCCT
CAGCCCATGCCTCAACCCCAACCCCAGCTCCAGCCACCACCCCAACAACA
ACAGGTGCCCCCCACCTCTTCCCCAC
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Coding sequence (CDS) from alignment at P-lacustris_contig99:243934..244359+

>mRNA_P-lacustris_contig99.16196.1 ID=mRNA_P-lacustris_contig99.16196.1|Name=mRNA_P-lacustris_contig99.16196.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=750bp|location=Sequence derived from alignment at P-lacustris_contig99:243934..244359+ (Pleurocladia lacustris SAG_25_93)
ATGATTTTCAATACCGGTGCTTTTCAATGGTCTATGGATGCGGCCAGTGC
GTCAATGTTGGGTTTTGAGCAGTTACCACTATCGTGTGTCTTCAAATCGT
CGAAAAACGTCGTTGCTGGAACTACGTACCCACCTAGACCGCATCTTGCT
CTATCCACTGAGGACCCACGACCCGAGGTTACGCAGATGTGCTTTGGTGG
AGATTCATGCCCAGCCAGCCCAACCCGTGCAGTACAAGCTCATGCCCAGC
CACCCCTACGCAGATTCAGCAACCCCCCCAAGGGCAACCCTACCAGCCTC
AGCCCATGCCTCAACCCCAACCCCAGCTCCAGCCACCACCCCAACAACAA
CAGGTGCCCCCCACCTCTTCCCCACATGATTTTCAATACCGGTGCTTTTC
AATGGTCTATGGATGCGGCCAGTGCGTCAATGTTGGGTTTTGAGCAGTTA
CCACTATCGTGTGTCTTCAAATCGTCGAAAAACGTCGTTGCTGGAACTAC
GTACCCACCTAGACCGCATCTTGCTCTATCCACTGAGGACCCACGACCCG
AGGTTACGCAGATGTGCTTTGGTGGAGATTCATGCCCAGCCAGCCCAACC
CGTGCAGTACAAGCTCATGCCCAGCCACCCCTACGCAGATTCAGCAACCC
CCCCAAGGGCAACCCTACCAGCCTCAGCCCATGCCTCAACCCCAACCCCA
GCTCCAGCCACCACCCCAACAACAACAGGTGCCCCCCACCTCTTCCCCAC
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