mRNA_P-lacustris_contig989.16172.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig989.16172.1
Unique NamemRNA_P-lacustris_contig989.16172.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig989.16172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig989contigP-lacustris_contig989:30966..35752 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.8
Seed ortholog evalue1.3e-07
Seed eggNOG ortholog2880.D8LRW8
Preferred nameMGAT1
KEGG koko:K00726
KEGG ReactionR05983
KEGG Pathwayko00510,ko00513,ko01100,map00510,map00513,map01100
Hectar predicted targeting categorysignal anchor
GOsGO:0000139,GO:0001701,GO:0002252,GO:0002376,GO:0003002,GO:0003674,GO:0003824,GO:0003827,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005795,GO:0005797,GO:0005975,GO:0006040,GO:0006047,GO:0006049,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006807,GO:0007275,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007568,GO:0007610,GO:0007626,GO:0008150,GO:0008152,GO:0008194,GO:0008340,GO:0008344,GO:0008375,GO:0009056,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009227,GO:0009790,GO:0009792,GO:0009987,GO:0010259,GO:0012505,GO:0016020,GO:0016021,GO:0016319,GO:0016740,GO:0016757,GO:0016758,GO:0018193,GO:0018196,GO:0018279,GO:0019439,GO:0019538,GO:0030534,GO:0031090,GO:0031224,GO:0031984,GO:0031985,GO:0032501,GO:0032502,GO:0034641,GO:0034645,GO:0034655,GO:0034656,GO:0035010,GO:0035282,GO:0035283,GO:0035284,GO:0036211,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044270,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046348,GO:0046483,GO:0046700,GO:0048471,GO:0048513,GO:0048731,GO:0048856,GO:0055086,GO:0060322,GO:0070085,GO:0071704,GO:0098588,GO:0098791,GO:0140096,GO:0140103,GO:1901135,GO:1901136,GO:1901137,GO:1901360,GO:1901361,GO:1901564,GO:1901566,GO:1901575,GO:1901576
EggNOG free text desc.alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity
EggNOG OGsKOG1413@1,KOG1413@2759
EC2.4.1.101
COG Functional cat.S
CAZyGT13
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Exons4
Model size633
Cds size366
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig989.16172.1prot_P-lacustris_contig989.16172.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig989 30966..33069 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817419.1779785-CDS-P-lacustris_contig989:30965..310641622817419.1779785-CDS-P-lacustris_contig989:30965..31064Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig989 30966..31064 -
1693495053.8505638-CDS-P-lacustris_contig989:30965..310641693495053.8505638-CDS-P-lacustris_contig989:30965..31064Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig989 30966..31064 -
1622817419.1894631-CDS-P-lacustris_contig989:31880..319371622817419.1894631-CDS-P-lacustris_contig989:31880..31937Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig989 31881..31937 -
1693495053.8650737-CDS-P-lacustris_contig989:31880..319371693495053.8650737-CDS-P-lacustris_contig989:31880..31937Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig989 31881..31937 -
1622817419.200891-CDS-P-lacustris_contig989:32859..330691622817419.200891-CDS-P-lacustris_contig989:32859..33069Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig989 32860..33069 -
1693495053.8859184-CDS-P-lacustris_contig989:32859..330691693495053.8859184-CDS-P-lacustris_contig989:32859..33069Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig989 32860..33069 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817419.2113461-UTR-P-lacustris_contig989:33069..330781622817419.2113461-UTR-P-lacustris_contig989:33069..33078Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig989 33070..33078 -
1693495053.9014292-UTR-P-lacustris_contig989:33069..330781693495053.9014292-UTR-P-lacustris_contig989:33069..33078Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig989 33070..33078 -
1622817419.2217906-UTR-P-lacustris_contig989:35496..357521622817419.2217906-UTR-P-lacustris_contig989:35496..35752Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig989 35497..35752 -
1693495053.9121075-UTR-P-lacustris_contig989:35496..357521693495053.9121075-UTR-P-lacustris_contig989:35496..35752Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig989 35497..35752 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig989.16172.1

>prot_P-lacustris_contig989.16172.1 ID=prot_P-lacustris_contig989.16172.1|Name=mRNA_P-lacustris_contig989.16172.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=122bp
MYHSMKGGARRSGDALLSFERKRRNSLGKYGRQRGGGGVASWAVSWVFRN
TFKVWVCILLVMAGFVVFIQLRAHPVHDPAMKRQSSFFTHYEEHRQDTQD
IPPTRDHADDHADEVLTVIHVG
back to top

mRNA from alignment at P-lacustris_contig989:30966..35752-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig989.16172.1 ID=mRNA_P-lacustris_contig989.16172.1|Name=mRNA_P-lacustris_contig989.16172.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=4787bp|location=Sequence derived from alignment at P-lacustris_contig989:30966..35752- (Pleurocladia lacustris SAG_25_93)
CTTGGTTGTTCTGTGTTTGCGCCGCTACAAATGTAGTCACCAGTAGGAAC
GACGGTTCCCCGCTGCTTACGAATTGTTACGACATTCCCTGCTGTGTAAC
TCCAGGACTGAGCGTCGAGCGCCTCCCTGGCGTGACTCGTTCAGAAGTTC
TGATTACGTCTCATTCGCGTCAAAAGGCAACTGGCTCGGGGAAGGAGAGC
AGTCGGTGTGCGTACGCCAGAAGAAATTGGCCACTCACTCAGTATATCCC
AAACAGGTGTGTACATTCCTGTTCCTTCTCTTGTGTTTTGACAACATCAC
CATGGAGGAGGCGGCTTGGTTTGCTGAGAGCACACGGGATTGATGAGCGT
TGCGTTGGTGCCATTCGTTGGTTGGCCCTCGTACGCAAACGCAGAGTACC
TTCGCCCGCATTGATTCGCCTCTCAATCTCGCCGCAAGTGTTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCGACTGCTGTGTGTAGCTCCAA
GTTGACGAGAGTGTTGCATAACAGCATCGGTACAAGTAGCATTGAGCTTT
TCATGTCATTCTTCGAAAACTTTCGTGCAAACTACAAACCCAGCGGGGTA
GGCTCGACGTTTTGCCAGAGTTGTGTCCGCTTCCCCGAGGCTCGTCAGCT
CTAACGAGGACGGCGGTGGGGCAGGGAAGCAACTTTCCGCACGTCGTCTG
CGAAAAAACTGCAGTCACTTGCTCAAGCATTCTTGAGATGAGGTACTGCT
CCTGTCGCGCTGGAGACGAGCTTGGCAAATCGTGCGGAAAGTTCACTTGC
CGGAGGATCAGCGAGCCGGTTGTCTGAAGGGATTCCATACATACTCATTC
ATATTTTGAGCACCGGTTGTCGTCTGCCCCACTCGGCAACAAACCCTTGC
AGGATCCTGTTGTTGTAGAGGTGACTAGAATTGACGCAAGCTCAACGCTC
GGCTACCGAGCGCTGTGAGAGCAGTGGAGAAACTCACCCCCCTCCAAACT
CGAGATGTTACCGCATTTTTTTTTTTTTTTCCGTCCCATTTATTTAAAGA
ATATACAAAACATCACCAAAAGACCACCACCTAGGAAACGTCTCGTAGAT
GGCTTCATTTTCATCTAGTCTTTATAGTGAAGGTTGGGATGACACCCGCC
GCCTATTGACTTCTTTGTATGTGTTAGAAAATATACATAACATCACCAAA
AGACTACCACCTAGGAAATGCCCTTTAGATGGCTTCATTTTCATATAGTC
TTTACATTCTTGCTATGTCTTTCTTACACCTCGGTGATTGTAGGGTTAGC
ACCCAGCCGGGGTCATACAGAAGGGTTCCTCTCCCTGAGGCCCCCCACGC
GTCCTCCTGCGAGGGAGCAGGCAGGAAGACAGAAAGGACACCTATCCCCT
AAAACATGCCAATCAGTTGCGTCAGCCAGCAGTTGCTTCTGAATCCTTAT
CCCTCCTCTCGAAACCACACGCCGTCGACCGCTGACAGACGTGCTGTGCG
TGGCAACCGCTAAGCTGTGCGTGCAGAGATTTACCTGCGTAAGGCGTAAG
ACGTCCTCAACGCGCCGACTTTTGCGTTGCATGGTAGGATGCACGGAAGC
GGGAATGTTTTTTCCCGATTTTTGCTTTCCTCGGAGGGTTTTACTTGACC
GATCACGGTAAAAGGCACATCCTGACGTTTATTGAGCAAGGATATTACTG
CATTTTTGTGCTGCCCCCTCCAGCAACAAAGGTGCTTCGAATTAGCGGCT
GCTGCTGCGCATCCAACGCACCTCACATTTTTGCAGAGCCCGGAGAAGGT
ACTGAGCAGAGACCGGAGCGGTTTTTTAAGTGAAGTTTGACAACAACAGC
AACAAGTGTGTTCCATTGTCAATGACACACACGGACACATGGGTCATGAT
GTGCAGCGTTTCTGTCTTAGAGCTTTGACGCTAGTGCAGGTGTCCAACTC
AAACGCAATATCTTAATGTATGTCCGGATCGGTTTTTGGTGGCTGCTTTT
TCAACACTTTACGTGTCTGTTTTCGAGTTTTTCCTTAACGTGCACATAAA
TGGTGAAACATTTCACCAAAGAGCACATCTTTTTTATGTCAACTTTATCC
ATCCCTGTTGACATGCCACTTGTTATGAAGTTTTTCAGCCATAGACTATT
CCATTTATTTGATCATTGAATCGCTTTTTTGAACTAAACGTTGGGGCGAG
GCCGGGGGGGGGAGGCCGGGGGGGGCGCATCCCCGACGTCCGAAGCCCTT
CTATGAATCTACGTCCAACGCCTCTCTGGCTCTTTGCCGCTCGGGTATGT
CTTTGTGCGCTCCCCTGCTGCATATCACTCACGCCTTTGGTGCAATGATT
AACCTGGGTGTTGTGTGTTGGTTGAGCGGGACTGATATCGCAAAGGCCGA
CGCGCGTTTGGCCTTCTGAGGGGATAGGGGATGACACCTGTCCCCTGTTG
CTCATACTCTCCCGAACCGAACCGGGCACTAATGCAGCCCATTAGTATCT
ACCGGCCTGATACCACCCGCCCCCGCGTCCGCCGCCCCCTCCCCTCCCCG
GGGTCCCCTCATTCCTTCTTCTCTGTGCTCGGTGTGCTGTCCGTCCATTA
TAACATGTGCTACGCCGCGAGTAGTAGTGTATCATGTACCATAGCATGAA
GGGGGGGGCACGGAGATCGGGAGACGCCCTACTATCGTTTGAAAGGAAAC
GGCGAAATAGTCTCGGCAAGTATGGCCGCCAACGAGGAGGTGGTGGTGTC
GCGAGTTGGGCAGTCAGTTGGGTGTTCCGCAACACCTTCAAGGTGTGGGT
CTGCATCCTGCTGGTGATGGCAGGCTTCGTGGTCTTCATCCAGGTAGACG
GCCTGCTGCTGCTGCTTTTGTTGCTGTTGTTGTTGTTGTTGTTGTTGTTG
TCGTGCCGCCGTCGTGTCGTGTGTATCGTGTAGGAATAGTGCAAAACTAG
TGCCTTGCTTTGGATTGATGATGCCTCATCCTATCCCAATACGTTCATTC
AATGATCTATGGCGAGACAAATTATACAAAAATCGGATCGACGACGGATC
CCGAATTCGGAACGAAAAAGGGTATAGGCGTCGGCGCGGTAAACGTATTG
ACATTAGTACCACCATGATCAGAGTCTGCTTCCTCGCCGCGAAACACGCG
AGAACAACCCCGTCTCGTTTGCCCGTCGATTCTACCCATTCGCATGCCGT
CCATTCTACCCATTCGCATGCCGTCTTTTTAACGGCGAAATTTATGCCTG
TCTCGACCGTATGCTTGTTTGGATTTCCGCCCTGTGTACTTCCGCTGAAG
CGACTTGGAAGGGGTTTTGATGCGACTTGGAAGGGAGTTTGATGCGTTTC
CTCCCATTTTCTTCGAGTATCGTCATAACTCTGCATGCTTTTTTTTCTTT
GCGAACTCTAAACACAATTTTAAATGCACCCACCCTGGTTTTCTAGTGGT
TACTTCGTTGAACGTACTAAGCGACCAATTCGTGAGTAAAGCAAAATTCG
ATTTATTTCGACGAGGGAAAGGAACGGGTGAACCCTTCTCGCGATAAAAA
ATAGGACATGTACACCCGGAGGGCGGGTGGGGGCCTCAGGGAGAGGGAGG
GACCCTTCTGCGTGACCCCGGCTGGGTGCTAACCCTACAATCACCGAACG
GCGTAAGAAAGACACAGCGTCCAGAGTAGATGGGATGAACAAAAAAACCA
ACACCCTCCTCCTGCGTTGACCCACTCGTTCGTGTTGCTTGTGTTCGCTC
TCCTGGCCTTTTCAGCTGAGAGCGCACCCCGTGCACGATCCCGCGATGAA
GCGTCAGTCTAGCTTCTTCACGGTATGTGCATCCCAAAGCTGGAAGCAGC
GTTGTTGCTGTTGTTTTTGCTCGTGTTTGCTTTGCTCTCGATGGGTGTTG
TCTTCATCTTCGTCGTACCTTGTTTTGAGGCTGGTTACCGTTCTAACCTC
TCTGTCCGATCCCCGATCCCACCGTGTTTCGCATGCATCATGAGTACTCC
AACCGGAAAGAGTCGAACCACGTGATCCGGCCGTCGGCTGCCATGTATAG
CCAGGACAATGAACAAAGAAAGACGAAAATTGGCGTCCGTAGTTTTCGTT
CCAGTGCCACCCCCTTCGGTTTGGGTGTTTACTCTTGGCGTTTTTTTGTT
TTTTTCAGCATCCCTGGATTATCGACGGATTCGGCACTCATTGTCGTCCT
CTTTTGCATCATTTGCTACAGTAGACACAATGCCCGTTTCATTTATGTAG
GCTCTTCGAGTGAGTTGGAGGGTGCTGTCTTGTTCCGTCTGTTACGTATC
TATCTCTCTGTCTGTCTCTCTGTCGGTCTGTCTGTCTGTCTGCCGGCTTG
TGGTTGTCCTCGTCCGCTACATTCCATCCTGACGGGGCATAGCACACCTT
GTTGCTTTGTCGAGGGATTGGTGATTGCGCTGTTTTTGTTGGCTTTTTTG
TGCTCGCGCCCTCTTCTGCTGCTTGTGACCTCTCTCGTGTTTTTTCTCGT
GCCTTTCTCCCCGTTCTCCTTCACGCCTTCACATCGAGCGTGCTTTTGCC
TCCCTACCTTCTTGCCTGCCTGTCGGCCTGGTCTCGCCGTCGTTGTTGCT
CTTGCTTCTCGCTTGCCTTGTGCGCTCGACAATTTCAGCATTACGAAGAA
CATCGACAAGATACACAAGATATACCTCCCACACGAGATCATGCTGACGA
TCATGCCGACGAAGTCTTGACCGTGATTCACGTCGGC
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig989:30966..35752-

>mRNA_P-lacustris_contig989.16172.1 ID=mRNA_P-lacustris_contig989.16172.1|Name=mRNA_P-lacustris_contig989.16172.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=732bp|location=Sequence derived from alignment at P-lacustris_contig989:30966..35752- (Pleurocladia lacustris SAG_25_93)
ATGTACCATAGCATGAAGGGGGGGGCACGGAGATCGGGAGACGCCCTACT
ATCGTTTGAAAGGAAACGGCGAAATAGTCTCGGCAAGTATGGCCGCCAAC
GAGGAGGTGGTGGTGTCGCGAGTTGGGCAGTCAGTTGGGTGTTCCGCAAC
ACCTTCAAGGTGTGGGTCTGCATCCTGCTGGTGATGGCAGGCTTCGTGGT
CTTCATCCAGATGTACCATAGCATGAAGGGGGGGGCACGGAGATCGGGAG
ACGCCCTACTATCGTTTGAAAGGAAACGGCGAAATAGTCTCGGCAAGTAT
GGCCGCCAACGAGGAGGTGGTGGTGTCGCGAGTTGGGCAGTCAGTTGGGT
GTTCCGCAACACCTTCAAGGTGTGGGTCTGCATCCTGCTGGTGATGGCAG
GCTTCGTGGTCTTCATCCAGCTGAGAGCGCACCCCGTGCACGATCCCGCG
ATGAAGCGTCAGTCTAGCTTCTTCACGCTGAGAGCGCACCCCGTGCACGA
TCCCGCGATGAAGCGTCAGTCTAGCTTCTTCACGCATTACGAAGAACATC
GACAAGATACACAAGATATACCTCCCACACGAGATCATGCTGACGATCAT
GCCGACGAAGTCTTGACCGTGATTCACGTCGGCCATTACGAAGAACATCG
ACAAGATACACAAGATATACCTCCCACACGAGATCATGCTGACGATCATG
CCGACGAAGTCTTGACCGTGATTCACGTCGGC
back to top