mRNA_P-lacustris_contig987.16165.1 (mRNA) Pleurocladia lacustris SAG_25_93
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Overview
Homology
BLAST of mRNA_P-lacustris_contig987.16165.1 vs. uniprot
Match: D8LHQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHQ5_ECTSI) HSP 1 Score: 263 bits (673), Expect = 3.420e-68 Identity = 204/471 (43.31%), Postives = 256/471 (54.35%), Query Frame = 1
Query: 2068 SRSFDGLFGELFHRTFAGLMRSPEGNSGEHSASPGWAEVSSEGEEDGHELLVGEAFGRSAKERRLQT---------------STDN-GGNYQLEIVASTGATSTDWNDALYKLEVGMVVPGQTGVPQTLITDGTIDEG-THRLTYRR*IWRGAATSCSPPGA-PGRTMYCGRSNRTASFTRTSREEGWTTTRSAWAGPCAE*ASAIGFATKSMTIATRT-----------SAPALATFWRPRTNPPGPTATAHKRR----RLTCE*RVSRRGCDPRSQCYMLDEAGDEITEAPTLTLVTYVTVVTSSVDTVGMETAVGQWLDFDPAYVELIRVNGEATGSSSLASRRTLLGDEEDEGEEQEEGVWLD----WRDEELEEGRRQSQGRGLQTATFKRLEFRIIGQSTTDFAGATETIVEGVRGLNSVLAALDEDFGVNEVQAYTAEYFIDTEYVPTADAPEVSIADTGVGAG 3369
SRSF G+ G+LF TFAGL++S E SGE S SP + E E ED E GRSA+ RR + DN GGNYQ+EIVASTG TST+WN A Y+LEVG VVPGQT +L+ GTI+EG T T + RG + G P ++ E G +SA G +G A M+ R + P P G T + R+ C + R C+ RSQCY+L +A EIT APTL +VTYVTVVT++V GMETAV QWLD DPAYVEL RVNG++T +S+ +RR L+ E+ V L W DE+ G+R+++ R LQTATFKRLEFRIIG S DF T T+ EGVR LN+VL+A +E+ V+EV+AYTAEY I++EYV TAD P VSIA +G G G
Sbjct: 606 SRSFGGMLGDLFRGTFAGLLQSWEEGSGERS-SPAFEE---EEGEDARLFGAAEWSGRSAQARRRRLYXXXXXXXXXXXXXGDNDNTGGNYQVEIVASTGDTSTNWNGAAYRLEVGTVVPGQTLPSSSLLAFGTINEGDTSPWTQTLNLERGCYVLYTTAGTRPYDVVW-------------QVEVGGEVYQSAEGGGQDYHTFGLGGALCGMSDCYRLCYEEHDDRDADECKSFGDLLAPSDEPAGANCTCTQDEQIDLRIEC---LGRDDCESRSQCYLLGDAAAEITMAPTLRIVTYVTVVTTNVYVDGMETAVAQWLDLDPAYVELARVNGKSTETSTEVTRRRLISAGENXXXXXXXXVRLGSGWGWSDEKG--GQRRARNRRLQTATFKRLEFRIIGDSDNDFPDITSTLSEGVRALNTVLSAQNEESEVSEVEAYTAEYSINSEYVATADTPGVSIAGSGGGTG 1054
BLAST of mRNA_P-lacustris_contig987.16165.1 vs. uniprot
Match: A0A6H5L752_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L752_9PHAE) HSP 1 Score: 203 bits (516), Expect = 1.020e-49 Identity = 87/115 (75.65%), Postives = 100/115 (86.96%), Query Frame = 3
Query: 2430 GDPSPYVSTVNLARGCYVLFTTGGTRPYDVLWEVQSNGELYQDVEGGGMDYHTFGVGGALCGMSECYRLCYEEHDDRDTDECASLGDLLAPSDEPAGANCNCTQEEEIDLRITCL 2774
GD SP+ T+NL RGCYVL+TT GTRPYDV+W+V+ G++YQ+ GGG DYH+FG+GGALCGMS+CYRLCYEEHDDRD DEC S GDLLAPSDEPAGANC CTQ+EEIDLRI CL
Sbjct: 730 GDISPWTQTLNLERGCYVLYTTAGTRPYDVVWQVEVGGKVYQNAAGGGKDYHSFGLGGALCGMSDCYRLCYEEHDDRDADECKSFGDLLAPSDEPAGANCTCTQDEEIDLRIECL 844
BLAST of mRNA_P-lacustris_contig987.16165.1 vs. uniprot
Match: A0A6H5LPC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LPC9_9PHAE) HSP 1 Score: 140 bits (353), Expect = 9.450e-34 Identity = 71/112 (63.39%), Postives = 86/112 (76.79%), Query Frame = 3
Query: 4029 GVDEDGEEIDVATEAPV---EGWGDFTRQTQFLIGAGLVVVTSIFLGIVACMVCRMKRKERREFKRKNATVDGQPKAVAYVDPWGSVARTFQKDSSHGQITGSSRASSVKGG 4355
GVDE+GE I +ATEAP + GDFTRQTQFL+GAGLVVV S FL IVAC+VC MKR++R+EFKR+N + DG+PK VAYVDPWGSVARTFQKD + ++ S +GG
Sbjct: 88 GVDEEGEVIVLATEAPEAADDDMGDFTRQTQFLVGAGLVVVVSFFLSIVACIVCHMKRRDRKEFKRRNQSEDGRPKPVAYVDPWGSVARTFQKDGAKAPSPSANGGESSRGG 199 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig987.16165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig987.16165.1 >prot_P-lacustris_contig987.16165.1 ID=prot_P-lacustris_contig987.16165.1|Name=mRNA_P-lacustris_contig987.16165.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=400bp MGAEAGGDAARRARCEPQNRARGCASVGTARCGTTQSRPRVVVRHGVSQRback to top mRNA from alignment at P-lacustris_contig987:43344..59821- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig987.16165.1 ID=mRNA_P-lacustris_contig987.16165.1|Name=mRNA_P-lacustris_contig987.16165.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=16478bp|location=Sequence derived from alignment at P-lacustris_contig987:43344..59821- (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig987:43344..59821- >mRNA_P-lacustris_contig987.16165.1 ID=mRNA_P-lacustris_contig987.16165.1|Name=mRNA_P-lacustris_contig987.16165.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=2400bp|location=Sequence derived from alignment at P-lacustris_contig987:43344..59821- (Pleurocladia lacustris SAG_25_93)back to top |