mRNA_P-lacustris_contig987.16163.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig987.16163.1
Unique NamemRNA_P-lacustris_contig987.16163.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
[Close]
BLAST of mRNA_P-lacustris_contig987.16163.1 vs. uniprot
Match: D8LHQ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHQ3_ECTSI)

HSP 1 Score: 400 bits (1029), Expect = 6.100e-129
Identity = 231/337 (68.55%), Postives = 257/337 (76.26%), Query Frame = 2 
Query:  191 MPSSSTLPPLVEAFPEDKYPLREVGQGFTAQTCQGEEAQACAASAAEMLEESRSFEVSGAASVGSENSVEEGVESFTVSDLPLPEGTSMTGMLILRNERIFPGMVGISLPLKGNLWVREDGTFNLSGFFRRQIPKFKLGLLMAAKENMAEFLDCYHAVYRPVVEVAVSRRQFQVVKTVVETGLGYYKDDCPARRDLLELRTRVKALRPSRPSIMGSSTLDAEPAAAAMAXXXAGPTKLEEMSTEEVMETRRRTSDSKLDDK-------EGTRQSSFTGGGDSDDASATRPSRIASGSERKLKIAQQVLGGEAPKQKGPFRLWKSKTGEESYNTAEPS 1180
            MPSS TLPPLVE FPEDKYPLREVGQGFTAQ CQGE     AA AAEML+ESR+ +VS   SV S++    G+E+F V DLPLP+G   TG+LILRNERI PGMVGISLPLKGNLWVREDGT NLSGFFRRQIPKF+LGLLMAAKE+M++FLDCYHAVYRPVVE A  R+QFQV++T++ETGLGYYKDD P RRDLLELR RV  LR SR S   S             XXX  PT    MSTEEVMETRRR SDSKL+         EGTR +SF  GG+SDDAS  R  R+ SG +RKLKIAQQV+GG+APKQ GPFRLWKSKTGE SY+  EPS
Sbjct:    1 MPSSPTLPPLVETFPEDKYPLREVGQGFTAQACQGEAXXXXAAIAAEMLDESRTVQVSHT-SVNSDSLDASGMEAFPVDDLPLPDGAVETGLLILRNERILPGMVGISLPLKGNLWVREDGTCNLSGFFRRQIPKFELGLLMAAKEDMSKFLDCYHAVYRPVVEHAAQRQQFQVIRTLLETGLGYYKDDSPTRRDLLELRARVTKLR-SRSS--ASXXXXXXXXXXXXXXXXXXPTSGGNMSTEEVMETRRRISDSKLEKDGAGXXXXEGTRSTSFASGGESDDAS--RSGRVGSGPDRKLKIAQQVVGGDAPKQSGPFRLWKSKTGEASYSKEEPS 331
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig987.16163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHQ3_ECTSI6.100e-12968.55Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig987contigP-lacustris_contig987:4616..15157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-20_002660.1
Exons7
Model size2790
Cds size993
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817417.7030616-UTR-P-lacustris_contig987:4615..62221622817417.7030616-UTR-P-lacustris_contig987:4615..6222Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig987 4616..6222 -
1693495052.6861515-UTR-P-lacustris_contig987:4615..62221693495052.6861515-UTR-P-lacustris_contig987:4615..6222Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig987 4616..6222 -
1622817417.8128412-UTR-P-lacustris_contig987:14967..151571622817417.8128412-UTR-P-lacustris_contig987:14967..15157Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig987 14968..15157 -
1693495052.788368-UTR-P-lacustris_contig987:14967..151571693495052.788368-UTR-P-lacustris_contig987:14967..15157Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig987 14968..15157 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817417.720985-CDS-P-lacustris_contig987:6222..63301622817417.720985-CDS-P-lacustris_contig987:6222..6330Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig987 6223..6330 -
1693495052.7009833-CDS-P-lacustris_contig987:6222..63301693495052.7009833-CDS-P-lacustris_contig987:6222..6330Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig987 6223..6330 -
1622817417.7330601-CDS-P-lacustris_contig987:6834..69991622817417.7330601-CDS-P-lacustris_contig987:6834..6999Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig987 6835..6999 -
1693495052.7124808-CDS-P-lacustris_contig987:6834..69991693495052.7124808-CDS-P-lacustris_contig987:6834..6999Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig987 6835..6999 -
1622817417.7436469-CDS-P-lacustris_contig987:7723..78621622817417.7436469-CDS-P-lacustris_contig987:7723..7862Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig987 7724..7862 -
1693495052.7226665-CDS-P-lacustris_contig987:7723..78621693495052.7226665-CDS-P-lacustris_contig987:7723..7862Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig987 7724..7862 -
1622817417.7568457-CDS-P-lacustris_contig987:9813..99021622817417.7568457-CDS-P-lacustris_contig987:9813..9902Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig987 9814..9902 -
1693495052.7378905-CDS-P-lacustris_contig987:9813..99021693495052.7378905-CDS-P-lacustris_contig987:9813..9902Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig987 9814..9902 -
1622817417.7712462-CDS-P-lacustris_contig987:11047..111351622817417.7712462-CDS-P-lacustris_contig987:11047..11135Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig987 11048..11135 -
1693495052.7505863-CDS-P-lacustris_contig987:11047..111351693495052.7505863-CDS-P-lacustris_contig987:11047..11135Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig987 11048..11135 -
1622817417.7863803-CDS-P-lacustris_contig987:11766..119031622817417.7863803-CDS-P-lacustris_contig987:11766..11903Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig987 11767..11903 -
1693495052.7636151-CDS-P-lacustris_contig987:11766..119031693495052.7636151-CDS-P-lacustris_contig987:11766..11903Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig987 11767..11903 -
1622817417.8015413-CDS-P-lacustris_contig987:14700..149671622817417.8015413-CDS-P-lacustris_contig987:14700..14967Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig987 14701..14967 -
1693495052.7755208-CDS-P-lacustris_contig987:14700..149671693495052.7755208-CDS-P-lacustris_contig987:14700..14967Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig987 14701..14967 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig987.16163.1prot_P-lacustris_contig987.16163.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig987 6223..14967 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig987.16163.1

>prot_P-lacustris_contig987.16163.1 ID=prot_P-lacustris_contig987.16163.1|Name=mRNA_P-lacustris_contig987.16163.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=331bp
MPSSSTLPPLVEAFPEDKYPLREVGQGFTAQTCQGEEAQACAASAAEMLE
ESRSFEVSGAASVGSENSVEEGVESFTVSDLPLPEGTSMTGMLILRNERI
FPGMVGISLPLKGNLWVREDGTFNLSGFFRRQIPKFKLGLLMAAKENMAE
FLDCYHAVYRPVVEVAVSRRQFQVVKTVVETGLGYYKDDCPARRDLLELR
TRVKALRPSRPSIMGSSTLDAEPAAAAMAAAAAGPTKLEEMSTEEVMETR
RRTSDSKLDDKEGTRQSSFTGGGDSDDASATRPSRIASGSERKLKIAQQV
LGGEAPKQKGPFRLWKSKTGEESYNTAEPS*
back to top

mRNA from alignment at P-lacustris_contig987:4616..15157-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig987.16163.1 ID=mRNA_P-lacustris_contig987.16163.1|Name=mRNA_P-lacustris_contig987.16163.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=10542bp|location=Sequence derived from alignment at P-lacustris_contig987:4616..15157- (Pleurocladia lacustris SAG_25_93)
GCTGCTGGCTGTTGAGCTGCTTTGTGCTGCGCCAGGCCAACGCACGTGAT
TCCTCCGGACAAAGAGCTCCATCAGCAGCGTCTCCCACCGGCCACTTCGA
GCCGACACTATTAATATTTAATATTTCCGTGTGATCAGCTACTCGTATCT
CCTCCAAGACACATCTTCAATATATCCACGGACACGGACCATGCCTTCCT
CTTCCACCCTACCCCCATTGGTCGAGGCCTTTCCCGAGGACAAGTACCCC
CTCCGCGAGGTCGGCCAGGGTTTCACGGCGCAGACATGCCAAGGAGAAGA
GGCTCAGGCTTGTGCGGCGAGTGCAGCTGAGATGTTGGAGGAGTCGAGGT
CGTTTGAGGTGTCGGGCGCCGCCTCGGTGGGCTCGGAGAATAGCGTCGAA
GAGGGCGTTGAGAGCTTCACGGTGTCGGATCTACCTCTACCCGAGGGTAC
TTCCATGGTGGGTGCCGCCTTGTTTTTTGCGGGGTGTAGGTTGTGCGTGA
GTGGTTGTGCCGTTTCTGGGCAAGACCGACACAGACGATCGTTGCGTGAT
TCACTTGAATTATGGATTATGCTTCTGCATATCAGCATAATATGTGCCCC
ATCATGCACACATGCGCCATTGCACCCCTCTTGATCCGAACACTAGATAG
CGCATTCGATATGCGTATGTGTCATTGCACCAAGGTATCGACTGTTGTTT
TTAAGTGCGGCAGCGGTGAGTGGTTGCCTCGTGCGAGGTGTATTAATGAG
GGCCCTCACGCCTTGAACCGCTGTTGGGTGCACGTATGATTGCCCCCTTG
CTCCAACTGCAACTTGCCTTGCTTCGTAGTGCTTGTAGAGCATTCAAGAC
AGACTAAGCATGGTTCTGAGGGTTAGAGTCTCGGCACGCCTATTTCCCCC
CGCTTGCATGATTTACTACTATGTGTCGTGCCTACAAGCGTAACCCTCAC
TGCAGTTGCTTGATTCATCTGGGACGATGTACAAAAGTATCCAAAGATGA
TCTTTTTATGTCGGTACACACCTAGTAAGTTTGCGGGTGAAAGCGAAAAA
AGCTGAAAAGCTCGTGAGTACCCAAGTTCGACATTATCACCGTTGAGGAG
GGAAGGGGACGGCTGAACCCTTCTCGCGATAAAAATGCAGGCATAGCAGG
AGGAAGGTGGGGCAAAGGTCGTCTTTTGGTGATGTTATGTATGTATATTT
TCAAACTCTTCAAAAATAAGAAAGAAGCCCCGTGTTTATTCCCTCCTGTG
TGACCCCGGTTGACTCAGTTGGAATTAGAAAATACACTGAAAAGTGTAGC
CCGTTAATACACCGCAACGTGTACCTACACGTCTCACCTTGATCGGGGGG
ACTGTCGCCAAAATACTGGGACGAAAACACACATTATACTGGCTGTGTGT
GTGTGTGTGTGTTGTGTTTTCGTCCCAGTATTTTGGCGACAGCCCCCTGA
TCAAGGTGAGACGTGTAGGTACACGTTGCAATTAACGGACTACACTTTCC
AGTGTATATTTTTAATTCCACTAGAACCAACCGGGGTCACACAGGAGGAG
GGTAAACACAGGGGCTTTTTTCTTCTTTTTATGAGTTTTTTTTGCCCCAC
CTTCTTCCTGCTGTGCGTGCCTTAGTTTTTATCGCGAGAAGGGTTTGGCC
GTCCCTTTCCCTCGTCAACGTTGCTAATGTCGAAGTTTGGTACTCACGAG
CTTTTCAGCTTTTTTCGTTTTCACCCGCAAATTTGCAAAATTTCCACCCC
CGGGGGGGATTCGAACTCACGACCTTTGCTGCTAGATGGCTTCGAGGCTA
CCACTAGACCACCGGGGATTAAGCAGAAACAAAAAAAAATTACACACGCC
GACGTACATTCAGCATGCAACCAATGGACGCATCGAACATGACGTCAGAC
GGACGACGCACGTCGCTATGATATTATTGGCAACTAATTATATTACAGAC
GGCGGGATGTTGTATAATTTAGCGCCAAACCTGCTAAAGGAAGACGCCGT
CTCGAAGGTGCGTGGATGGTTGCCCTTGTAGGGATTTGCTTATGAGACGC
GATCTCGAATATCGGAAGAGTGACAGAAATTTGTTCCGAATCGCTATGTA
TGTAGCAGCCACGGACAGATTTGAGTCAGGGCCCGGGGGAACAGGTCCTT
GGTGCGAGGAGGTTCAGCTGCTATTGCTTGTTTGAACCAGTGGATGAGAC
AGACAGCCGAGTTTGTTTTGTCCGATCGAGAGAGGCTCCAAAATCATATC
GATACTACTGCTGTACACGTCGATATCCACGCATTCAGGGACAACTCCCA
TGGACTTGCATGGGCATAGCTTTGAAAGTAGCCTACAAGATGATTGTCGC
TTTATGCACCGGATGTTCAACATGTCTCGTCTTTATCTGAACAACAGAAG
AACTGAGAAGCATTTTTATTTCATTTTGTTGTGCCGCCACTTCTGAATCA
AAATAAGAAATTTGTCCGCTGCGCTCCCACTTCTCTCCTGGACTTCTGGG
TCTCCGGCCGCAACCAGCCAACGGTATCAGGCCCCGCCCTCGCGGCTCCC
ACTAGAGCCATGTCATGCCATGTCGTGGGCTAGAACCGGGAACGAATTGT
CGGTTTGGGTGCCTGCTACTATTCTTGTTATTCCCCGAGCTGAGAGGTGC
CTCTTGATGCAAGCGGCCAACTCCAGTACTTGATAACTGCTGTAAATGTG
TTTTCGATTTGTGGATTCGATTTCCCGTTAAGAACAGCTCTGACGCCGAC
GCCGACCCCTTTTATCATTGCGTTGGCCAATCGCCGTTGTTTGCTTGCGT
CACTGGATGACGTATGTTGTGCATGTTATGTAGCGCTCTCTCTTGGTGGT
AGTCTAGTGGTAGCCTTCGAAACCATCTAGCAGCAAAGGTCGTGAGTTCG
AATCCCCACGGGGTGAGAAATTTGCAAAAAAAATTGCGGGTGAAAGCGAA
AAAAGCTGAAAAGCTCGTGAGTACCAAACTTCGACGTTAGCAACGTTGAC
GAGGGAAAGGGAAGGGGCCGCCGAACCCTTCTCGCGATAAAAGTTAAGGC
ACGCACCGCAGGAGGAAGGTGGGGCAAAAAAAGTCATAAAAAGAAGAAAA
AAGCCCCTGTTTCAGCCCTACTCTAAAGCCACGGAGACACCGCCTGGGTA
GCCTTGACACAAGTCTCGCTCGCTTTGTGTTCCCGCGTCGCTCGAGCTCT
GCGTCCGCTGACGATGCTCCAAAATGACACCGATGTTGAATTTCGTTTTT
TCAGACCGGCATGCTGATCTTGCGGAACGAAAGGATATTCCCGGGGATGG
TTGGGATCTCGCTCCCTCTCAAGGGCAACCTGTGGGTCAGGGAGGACGGC
ACATTCAACCTGTCTGGCTTTTTCCGACGCCAGATCCCCAAGTGAGCCAA
CCCAGTCCAATCGCATCACCCCACAAGCTAGTTCGGCGGTTCTACTGCCG
TCCTTAGGTTTCGACCTGCTTAGTTGTTGTTTTGACTGGGGCGAGCCGTC
AGGGAAAAAAATAAAAAGCGGTGCCCCCTTGGCGCAAAATGTTGTTTGTG
GAAAGACATACGTGGCACTCAGGGGCGACAGCAGCAAGAAAGGTTCCGAG
AAGCATGATTGCGTGTGTGGGCCCCCTCTGGCCTGTGTGTTACGCAGCAC
GCGGCGCCATTCGCGCAGGTGTAAGATAGCACAACCATGTTTGTTTCCAT
TAGCTTGCCAGCATGTTCACGTTGGGCGGCAGATGTTGCTGCTACAGTAT
GCTGGTTTGAGCTTGTGCCTCTCAGGGGCGGACGGGGGGAGAGGGAAAGG
GCGGCGTGCGTCTGCGGCAGAATGTACGAAGCGCCATCTATCATATTTGT
AGCATTTTTAACTTTTTTCTTGAGCACCACCCCCTTCACGAAGAAATTGG
TCATCGGCGCGCGCAAGGCGATCGTTACCATTTCTCCTGAGGATCCGAAA
ACCGGGTGGTTCGTTCTTGCTGTTGCTGCTGCTGCTGCTGCTGCTGCTGC
TGTTGTTGTGTCGGCGCCACAGGTTCAAGCTGGGTTTGTTGATGGCGGCG
AAAGAGAACATGGCCGAATTCCTGGACTGCTACCACGCCGTCTACCGTCC
GGTGGTGGAGGCAAGATTACCTTTATTTCTCTTATTTTTCACTAGTTTTG
TTATATAATCTCGATTTTTCTTGTGCTTCTTTTTGTGTGCGAAGGTGTTG
TTGTTGGGTGTCAAGTCAGTAGTGGGTTTTGTTGTGGTGTTTTCATCCTT
TCATTGCGGTGTGTAAAAAAAAGGCATACGATGCAGAGCAAGGTCAGTTT
TTGAGCTAGGAAGCAAGCTCAAGTTGCACATGTTCCTCTGGTTATGTTTC
TGTTTTTGTTGTGTACTGAGTTCGTGGAGTAGTGTGAGGAGAGATATATT
TCTTGTGTCAATCGTTGTGTACTGTGTACACAAGCAAGGCTCATACCTGT
ACGTGCATGGTCTTTCATGAAAACAATTGAAATCACAGCGTGGACTTCAC
TGGGTTGGGTTGTCGAATATTGAGCGGAAGTCACGAAAGCAGACTCTTGA
CATTGTTGTTGTGGCTGTTGTTTTTCGTAAGAATAATAAGACGAAAGACG
TTGCTTGATCGGATCGGATCGGATCGGATCGGATCGGATCGGATCGGATC
GGATCGGATCGGATCGGATCGTCATTGCATCGCACGAAATCTATTCGGTG
TGTGTGTGACGTCGTAGTGCGGTGAGCTCTCTCTTGAGTTTTCTAAAGAA
ACGTCCTGACAGTTCCGCCGCGGCGAAGGCAAGCCGTGGTGCACTGAGCC
TTCGACCACGTGAACCAACGCAGGGCCTATGACCTGTCCAATCCAATCCC
CAGGAGCCTCATCAACTGGAGGGTGTGAAAGTTGGGGTCAGGATTAGGGT
TCTGAGATGTAAGAACTTGAAAGGAAGGAGCTTCCTTCCGGGTTTCAAAC
CATCCGGTTACTTGCCCGCCATTCGTGGAAGTTTTTTCCCGTCGTTCATC
TCGTCTTTCAAACAGTTTGATGGACGGCCTGCTGTCATATGTATGATGTC
CCCGAAGGCTTTTCTCCTCGGCAACGAGGCAGAATAGCACCCTGGTATAA
CACTTGGCGTCAGCGATTTAATTATCCCTCGGCCGAACTGATAACAGCGA
CGACAAGTGGGACCAACCACACCATATAAACACGTTCATCCCTAAGCTTT
TTTGTTCTGTTGCGCTTGGCTTGAGCTGCTGTTCGCTTTTTTTTCTTTTT
TTTAGGTAGCGGTCTCACGGCGGCAGTTCCAGGTGGTCAAGACAGTGGTG
GAGACGGGCCTGGGATACTACAAGGACGACTGCCCCGCCAGAAGGTGACA
GAAGCAACAACATCGATCGAGCTAACAACAACGATGACAAAGGAGAAAAC
CAGTACAAGTAACATTGCAACCGTCGACACCACCACCACCACCACCAACA
ACAACAACAACAACAGACGCCGCTTCAACGGCAAAGCAACAATCACACCA
CCACTATACCACCACCATCTACAACAATAGCTGAGATACCCAGCAGCAAC
AACTTCGGAGTGTTCGACGACCACAATACCAACAAAAACAAAAATGGCCA
GTAACCAAACAGCCCCCTGACACTGGCACCAGCATGTCCCGAGAGTTTTG
TCTCACCGTCCCCATCTCGCGGTCGCGGCATTTTTCGGTTTTGAGCACGG
CACGATACGGAGTTGTGATGAAAAGAAGATGGCATGGCCATTTGGAGGCA
GACTTTTGTTGCAGCGGCGTCGTTGAGGAATTCCCTGCGCACCTCGTGGG
ATTGGTCACCTCACTTGAATTGGACAAGAAGGATATTGTGGACCTTGTCA
TGAAGGTTGCGTGATGCGACTGCTGCTGCAAGGTTTCAGGGAAGGTACCC
ACCATGCGTTTTGCGGCTCGATTGCGTTTTTTTTTTCTGTTCGTCCTCGG
AGAAACAAACGTTTGAAGCGTTGTTCACCTTTTTTTTGAATGCTTTGTTT
TTTCATCAAGGAGAGCAGGCATGGCACGCACGACGCCCTTCAACGAAACG
AGGCCAGTTGGGGAAATAAAATGGAAATGGAAATGGAAATGGAAATGGAA
TTGGCCTGCGATTTTGGCTCTTTTACGCTTCATGTGCTCAGTTGTTCCTC
GCTCGGTACGAGGGGCTTTGGGGTTCCATGGTTATATCTTCAAGATTGCT
TTGTGTCAGACTTCGGTGTCTTCCTTCCGTTTTGCTGTTAATCTAACCCT
AACCCACGCCTAAACGGAGATCGACGCATGCTTTCGAAGGTGATATGCCA
CACGGAAAAGGCTGGCCTAGTCCCTCAGATCATGAGGTGACTATCATCGC
CCCCAAGGAATGGATAAATCGGTGTCACGCCATTTAGGATACTTTCAGAT
GGATGTAGTGGTCCCTTACATCCACCGGACGGCCGTTGGGATTCAAACGC
GTTGTAGTCCACGGCTTGGTGTCTTGTGCCCTTCGCTTAGGGACAGTTGG
GTGGTACGCGTCCTTGGACTTACCCGTGCATGGAAATGCTGCCGTTACGT
ACGCACTAATTGCTGCAGTGCTTCTTGGTTCTGGGGCATAATATTTATCA
TGACTTGCATACAGCAATCGGTGGCTTCCCTCGGAGGGGATTGTAGACTT
GAGCATGTTCCATAGCTGGTACATGCGTCTATATAGCCTAGAAACCTTCT
AGCGGCCAGGTCGTGAGTTCGAATTGTTTCGCACCCACATTTAGTAGCAT
GGAGCGGTCATTTCGCAGGTACACATTGGGGGAAGGATTTGGTGAGTGAC
CCCTCCTCGTTTAGAAAAAAGCAGGGGCGCGCATGCACCGCCCATTCTGT
CCCCGGATCTGAGGCAAAGCTCTTGAGTTTCTAGAGGCAAGGCCACCAGG
TCGGTGGACAACCGCTAGCGACGGTCAGCATTTTTTTTTTTTTGGCAGCT
TCTAGAGGATGGAAAACAAACAACACAGTTCCGCGTCGATTCCCGTCACG
TACGTCTCTCACGTGTAAATGGCGGAGTACACGTCCCCTGTGGTTGACGC
TGCCGCTGGCTTTCGTCCGTGTCCGCTCGTCTTATAAAGCGCTCGACCTC
TGTACGATCTTGTTTGTTTTTCCCTTGGCTGGTTTTCGTCAAGAGTTCTG
TCCTGTCTGCTGGTGTCAGAGTTCTGTCACATCTGCTGGTGCGGGGTCCG
CGTCGCCCGATGCTCAGTCCCGTCTCCGCTCGTCCTTCTTCCCCTCTCCC
CTCTCCCTCCCCCTACTGCATGCATGCCTATTGCCACTGTTTCAGAGACC
TGCTGGAGCTTCGCACGCGAGTGAAGGCGCTCAGGCCGTCACGCCCATCC
ATCATGGGCTCGAGCACCCTCGATGCCGAACCAGCTGCAGCTGCAATGGC
AGCGGCCGCCGCCGGCCCCACAAAATTAGAAGAGGTTCGTGCAGTGCGTG
CGTGGCAGACACTTGCTCGGTTTGATACCTAAATTTACGTCGTGGTGTTG
GTGCTGGAGGTGCCCGTTCACGTTACTGGCGTGTTTGTCGGTGATGGCGG
GCGATGGCGGGTGATGGCGGCGGCACTCGGGCCTTGTTGGCGTTTTTTTC
ATTTCAGTCTCAGTCGCCGGGGCTTGGTGTCTCGTCGCTATGCTGCCCCA
GCCTCTGCCTGGACGCGTTTGCCTTTTTCGCGAACGCTCACCCCAAGCCC
CGGAATCGCACAACGCGCCCCAAACCACGATGTACGCGTTCATCCTCCGA
CCCTCATTTTCCTTTTGATTTCATGACATGGGGTTGCTGGCACGGGTGAC
CTTCGTTCTATGGAAGCTTTGCGGGTGGTATGCATAACTGTCTTATTCGA
TGATGTCCTTGTTTTGTTGTGTCCTTTTCTATTCCCGTTTTCCCGTCATA
TTCTGTTCTATTTTTTATTCTATTCTATTATTTTCCGCTCTATCCTGGGC
GACACGAGCGATGACCATGACGCCGCCGCCGTGTACAACAGCACAACTCT
GCTGTGTTCGAGTTGTACGTCTGCTGCTCTGCTCTTGGTGAACTTGGCGG
TACAGCCATCTTAGCGCCTCTCGAGGGCGAAGAAAAAGGTGGTGCAAAAA
CAAATAGACTGACTAACGTCCACACAAAAATGCCCGACGTGCCATGGCCG
TACTTTAGATGTCGACGGAGGAGGTGATGGAGACCCGAAGGAGAACTTCG
GATTCGAAGCTAGACGACAAGGAGGGGACAAGGCAATCCTCGTTCACCGG
GGGAGGTGACTCGGACGACGCTAGCGCGACCAGACCGAGCCGCATCGCGT
CTGGATCAGAGAGGAAACTCAAGGTCAGACGCCAGACAAGACGGCGCTAT
CATGCTTCGATCGATTTTGTCATTGATGGTTGGGTCGATCGCGCTAGCTG
CTTGTGTTGGTGTGGTCGGCTTTAGTTGCTCCTAGTATTGGTGTTGTTGC
AGTTTCCTGCGGATGTTGTTCTTGCTGTTGTGTCATGTCGTGTGTATGTC
ATTGATTGGCGTCGACCGCGCGCTGACCGGCTGACCAATGAAAGGTCTAC
CAGTTTTGTCGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTATGCCGCTTGATGAATTTCGAGGCCCGCTTTTCGGACCGTGAAG
GATCGAATACTCCGCGATTCCCCCGCGGATCAATCAAGTTGCCGCTCAAT
CATCTCTCCTTTTATTTGAAAATGTGAATGTGGGACATGCGGCGTGCTGA
AATAATCGTCCCTGTAGCCTTTCATGGTCATCACTCCAGTACATGACAAA
ATTCCATCCATTGTCATCGTGTTACAGATCGCTCAGCAGGTGTTGGGCGG
AGAAGCGCCGAAGCAGAAGGGACCCTTCCGCCTTTGGAAAAGCAAGACCG
GGGAAGAATCTTACAACACGGCGGAGCCTTCCTAGAGAAGTACTGCTTGG
TTGCGCTTTGACTAGCAACACTGGTGAGGGGATGTGATGGCGGAGCGCCG
GCCCTGGTAGAACAGCTCAGAGGCGAGCAACGTTCCGGTGATTTTTTCCT
TTTCTTTTGTTTCTTTTCTTTTTTGTTCCATTTTCCCTTCCCGGATCGCC
GCGGTAATCCGAAGGTGCCATATTATATGTACCGGGACGGAGAACCGTGC
CTGTTTTCCACCAGAGCTGTTACTTTAGTGGAAAGTTCGCGGAACTTTCC
AGCGGTCGAAACGAGTGACGCGATCTTGGCCGTTGCGTGCTGTTTGAGAG
CGTGCCCACGGGTGTGAAGTCCCAAAACAAGCGGAAAAAGCCATTCATTC
CAGGCGGCAAGCGCTCTGTTGCCCGTTGATGGTGGTGGCTGTGCTACCCT
GACACACGTTTGTTCTGTAAGTAGAATTTGGTACGAGTGTGTCAGGGTAG
CAAAACATACACCGAGAATGAGACTCAGAGATATGTTCCCTGGCGGGGAA
GTCGCGCTTGACTGCTACATCGCCTTAGATTTGCATCGTCGGCCAGGTTT
GTTCGGTGTCGGATATTTAACAAAAAATATACATAACATAACCGAAAAGA
CTACCACCTAGGAAATGCCCAGTAGATGGCTTCATTTTCATGTAGTCTTT
ACAGGATATTTTTCTCGTTTCGTACTTAGATGTCAAACATCACGCTTTTG
AGCGCTCAGATTGGGCATCGTCCGGGTTCATGTGAAACATTATGTCCGGC
GACGCCGCCCATCCCTTGCGGGCAGGGGATGGCGGTAATGCATCCGTCAT
CTTGCCTGGTTATTCTAGACTGAATTTGTTTCAGATTGAGAGTCGAGCCG
AGTAAATTGATCCTTGGTGACTAGAGATGGCCGGAGAGGCTGTGATGGAC
ACTCGTCGGTAGTGTTCCTGTTTCGCCATGTCCGTGTCCCACTTGTTTCG
CGTATTTATGTGTTTGTCGACGTACAGCAGCAAGCAGTGTACAGGCAGCT
TGGAGATCGTGAATTTAGCGTACGCGTGTGGCAATATTAGTGGGCTGTGT
GCGAATATTGGACGTGAGGTTTTGTTCAGTCATGAATGAGACAGCGTACA
GGCTGGGTCAAAAATGGTTCGAGGCGTTTGTGACGATGACAAGAATGGTT
TCGCGAGGACTACGTGCGGCGCACCACACCAACAGCAGCAGCAGCAAAAG
GCAGTGTCTGGTTTTCCGATCGTTTGGTTAACGTTAATCGCGACGACGAC
GATAACACAGGTGGATGTAAGGTAACTCTTGGGCATGGCCGGGACGTGCG
ATGTTTTTGTTTTCGAGGTGCTGTCATGTTTCGCGCAAGAAGCGGTGCCT
CTGCGTCAGTTGCCTGATGGTTGAGAGAGGCCAGCCTGTGCCTCTCATGT
CTCGCGCCGAAGTTACCGTGGCTTTGTGTGAATTATGTTTTCTGGTGATA
CAGTAGATGGTGTCGACGCGGGAGGTGTTTTGGACCGTGCGCTATCCCTG
ACAACCTGGTGTTTCCTTGCAGTGAGTAGATAGATATGTTCTAGCTGTTT
CTCAAAATTTCCTTGTACGACGGAGTGCTGCTGGGAGGGGGG
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig987:4616..15157-

>mRNA_P-lacustris_contig987.16163.1 ID=mRNA_P-lacustris_contig987.16163.1|Name=mRNA_P-lacustris_contig987.16163.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1986bp|location=Sequence derived from alignment at P-lacustris_contig987:4616..15157- (Pleurocladia lacustris SAG_25_93)
ATGCCTTCCTCTTCCACCCTACCCCCATTGGTCGAGGCCTTTCCCGAGGA
CAAGTACCCCCTCCGCGAGGTCGGCCAGGGTTTCACGGCGCAGACATGCC
AAGGAGAAGAGGCTCAGGCTTGTGCGGCGAGTGCAGCTGAGATGTTGGAG
GAGTCGAGGTCGTTTGAGGTGTCGGGCGCCGCCTCGGTGGGCTCGGAGAA
TAGCGTCGAAGAGGGCGTTGAGAGCTTCACGGTGTCGGATCTACCTCTAC
CCGAGGGTACTTCCATGATGCCTTCCTCTTCCACCCTACCCCCATTGGTC
GAGGCCTTTCCCGAGGACAAGTACCCCCTCCGCGAGGTCGGCCAGGGTTT
CACGGCGCAGACATGCCAAGGAGAAGAGGCTCAGGCTTGTGCGGCGAGTG
CAGCTGAGATGTTGGAGGAGTCGAGGTCGTTTGAGGTGTCGGGCGCCGCC
TCGGTGGGCTCGGAGAATAGCGTCGAAGAGGGCGTTGAGAGCTTCACGGT
GTCGGATCTACCTCTACCCGAGGGTACTTCCATGACCGGCATGCTGATCT
TGCGGAACGAAAGGATATTCCCGGGGATGGTTGGGATCTCGCTCCCTCTC
AAGGGCAACCTGTGGGTCAGGGAGGACGGCACATTCAACCTGTCTGGCTT
TTTCCGACGCCAGATCCCCAAACCGGCATGCTGATCTTGCGGAACGAAAG
GATATTCCCGGGGATGGTTGGGATCTCGCTCCCTCTCAAGGGCAACCTGT
GGGTCAGGGAGGACGGCACATTCAACCTGTCTGGCTTTTTCCGACGCCAG
ATCCCCAAGTTCAAGCTGGGTTTGTTGATGGCGGCGAAAGAGAACATGGC
CGAATTCCTGGACTGCTACCACGCCGTCTACCGTCCGGTGGTGGAGGTTC
AAGCTGGGTTTGTTGATGGCGGCGAAAGAGAACATGGCCGAATTCCTGGA
CTGCTACCACGCCGTCTACCGTCCGGTGGTGGAGGTAGCGGTCTCACGGC
GGCAGTTCCAGGTGGTCAAGACAGTGGTGGAGACGGGCCTGGGATACTAC
AAGGACGACTGCCCCGCCAGAAGGTAGCGGTCTCACGGCGGCAGTTCCAG
GTGGTCAAGACAGTGGTGGAGACGGGCCTGGGATACTACAAGGACGACTG
CCCCGCCAGAAGAGACCTGCTGGAGCTTCGCACGCGAGTGAAGGCGCTCA
GGCCGTCACGCCCATCCATCATGGGCTCGAGCACCCTCGATGCCGAACCA
GCTGCAGCTGCAATGGCAGCGGCCGCCGCCGGCCCCACAAAATTAGAAGA
GAGACCTGCTGGAGCTTCGCACGCGAGTGAAGGCGCTCAGGCCGTCACGC
CCATCCATCATGGGCTCGAGCACCCTCGATGCCGAACCAGCTGCAGCTGC
AATGGCAGCGGCCGCCGCCGGCCCCACAAAATTAGAAGAGATGTCGACGG
AGGAGGTGATGGAGACCCGAAGGAGAACTTCGGATTCGAAGCTAGACGAC
AAGGAGGGGACAAGGCAATCCTCGTTCACCGGGGGAGGTGACTCGGACGA
CGCTAGCGCGACCAGACCGAGCCGCATCGCGTCTGGATCAGAGAGGAAAC
TCAAGATGTCGACGGAGGAGGTGATGGAGACCCGAAGGAGAACTTCGGAT
TCGAAGCTAGACGACAAGGAGGGGACAAGGCAATCCTCGTTCACCGGGGG
AGGTGACTCGGACGACGCTAGCGCGACCAGACCGAGCCGCATCGCGTCTG
GATCAGAGAGGAAACTCAAGATCGCTCAGCAGGTGTTGGGCGGAGAAGCG
CCGAAGCAGAAGGGACCCTTCCGCCTTTGGAAAAGCAAGACCGGGGAAGA
ATCTTACAACACGGCGGAGCCTTCCTAGATCGCTCAGCAGGTGTTGGGCG
GAGAAGCGCCGAAGCAGAAGGGACCCTTCCGCCTTTGGAAAAGCAAGACC
GGGGAAGAATCTTACAACACGGCGGAGCCTTCCTAG
back to top