mRNA_P-lacustris_contig986.16161.1 (mRNA) Pleurocladia lacustris SAG_25_93
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Overview
Homology
BLAST of mRNA_P-lacustris_contig986.16161.1 vs. uniprot
Match: D7G0H0_ECTSI (F-box domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0H0_ECTSI) HSP 1 Score: 755 bits (1950), Expect = 1.530e-261 Identity = 456/764 (59.69%), Postives = 508/764 (66.49%), Query Frame = 1
Query: 286 MGSLRVDPGPLND--------------GGSDEREIVAG--LRAVAAVAG-GNGVDGRGPGRTLVALPDAMLSEVLGNLDVNCLGRASCVCRYLRETCSDERLWILLWKGPLPGGFSSGGKAAHAALWLLARGDVEQTRVAVCEPISPTRVTSRRRVGEAITSSSVNTVGGGRXXXXXXXXXXXXXXXXXXXXXA-GFPVHVSCMAVSGGVIATAAGPEITVWGMGKRVTPRARFKVSGHGSVTCLLLRNKTLLAGDNSGYLRSYDIGVPGG-RPLHEIRTHTDRVTAIDSFTHDDGNSPAADTPRETADGSSTRSTSRAKNCSAASAPESGDGSGSGGQQRRWDQGHGWGEGWQKGDNAEEADGRGSLLPQR-----CSNSDVPPPSHVSSAPSSGASVGVNMVSVGXXXXXXXXXXGGVRALGESRVGFSGFNTDLNRLHSGMPGNGSRVGGSGEPSSWLGKRQGYAGRGQVGKPAGAIAAIGGTRMQQSGGEMSRARRTWGGGDGNHSRVSAAGGAASPWREIEEEEENEWLVSRRRLRGGCGEQGDQRAVL-FTGSDDGTAKAWDASSGRFVRLYAGHTRGITCLQATFTKSYGPALVTGGGDSSVMIWELATGRCLEKLETGAGLVANPGRPGPRVGCLQVYNELIVVGEDRYVSVWSLRRGERPRLARTSFCEHQRPIRRLDMVGPWIVTCSGDYLIRLWDSKTGLCVRELGTKSGAAIISFRLSGLRLLTASLFDAGVLMTNFSPRGGG-GQGKSAAC 2499
MG++R+D PL D G DE E +AG A AA AG G+G G G GR L+ALPDAMLSE+LGNLDV LGRA C CR LR+T DERLW+ LW+GPLPGGF G KAAH ALWLLA+G+VEQTRVAV EP SPTR SRRRVGEA + GGGR A GFPVH+SCMA++G VIATAAGPEITVW M PRARFKVSGHGSVTCLLLR+ TLLAGDNSGYLRSYD+ VPGG RPLHEIR H DRVTAIDSFT GN+ AAD+P G + R S A+ E G GGQ+ RWDQGH WGEGWQ+ + +E +G LLPQR S PP H S G GG ALGES + + NRL G S GG+GEP S LGKRQGYAGRGQ +PAGA A GGTRMQ G + RA W DGN+ GA + W E + EEN+ V +R G G G+QR VL FT SDDGTAKAWDA SGRFV LYAGHTRG+TCLQAT T+SYGP LVTGGGDS+V++WEL TGRCLEKLETGAGLV NPG PGPRVGCLQ Y + IVVGEDR+VSVWSLR+G+RPRLAR FCEHQRPIRRLDMVGPWIVTCSGDY+IRLWDS+TGLCVREL TKSGAAI SFRLSGL LLT SLFD VLMT+FS R G G+G + C
Sbjct: 1 MGTMRMDRDPLQDVCGSDNSSSAYGNKSGVDESEKMAGGCPAAAAAEAGEGDGAIG-GQGRMLLALPDAMLSEILGNLDVKGLGRAGCACRGLRDTADDERLWVSLWEGPLPGGFLRGEKAAHVALWLLAKGEVEQTRVAVSEPSSPTRTASRRRVGEATAT------GGGRDQGHGGARGEEGPAGGGAVAVAAGFPVHISCMAINGAVIATAAGPEITVWDMEGASAPRARFKVSGHGSVTCLLLRSGTLLAGDNSGYLRSYDVSVPGGGRPLHEIRAHADRVTAIDSFTLPVGNTAAADSPVAEQPGGGSGGCYR----SPAAEGEGGAWGRGGGQRGRWDQGHXWGEGWQE-EESESGEGAQPLLPQRHLYGNSGASSYSPPPHAS----------WGAAGEGAGSRQQHGIGGGTGALGESPASAADLGVEFNRLRRGS----SHGGGTGEPLSRLGKRQGYAGRGQAYEPAGA-AVGGGTRMQGRGRGIDRAG--WAFDDGNNH------GAPNAWSEEKGGEENDPFVGQRPDDGKGGAGGEQREVLLFTASDDGTAKAWDARSGRFVCLYAGHTRGVTCLQATLTESYGPVLVTGGGDSAVIVWELTTGRCLEKLETGAGLVINPGGPGPRVGCLQAYRDTIVVGEDRHVSVWSLRKGQRPRLARARFCEHQRPIRRLDMVGPWIVTCSGDYVIRLWDSRTGLCVRELETKSGAAITSFRLSGLCLLTTSLFDTSVLMTSFSQRRGSEGKGSAKIC 729
BLAST of mRNA_P-lacustris_contig986.16161.1 vs. uniprot
Match: A0A835YXW5_9STRA (Quinon protein alcohol dehydrogenase-like superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXW5_9STRA) HSP 1 Score: 100 bits (249), Expect = 9.690e-19 Identity = 77/263 (29.28%), Postives = 117/263 (44.49%), Query Frame = 1
Query: 1867 AVLFTGSDDGT-----------AKAWDASSGRFVRLYAGHTRGITCLQATFTKSY-----------------GPALVTGGGDSSVMIWELATGRCLEKLETGAGLVANPGRPGPRVGCLQVYNELIVVGEDRYVSVWSL----RRGERPRLARTSFC----------EHQRPIRRLDM--VGPWIVTCSGDY--------------------LIRLWDSKTGLCVRELGTKSGAAIISFRLSGLRLLTASLFDAGVLMTNFSP 2463
A F G DDG A+A A G+ +++YAGH++ ++CLQA+ + G LV+G D +V +W+ ++G CL+ L V C+QV +VVG DR ++ W L E+ L+ + C Q + +L VG + + D+ L+R+WD ++G CVRE+ +SGAAI+SFRLSG L + SLF+ VL T+F P
Sbjct: 130 AACFAGCDDGVIRLIIISPRCIAQALGAMDGQLLQVYAGHSKAVSCLQASHSGGXXXXXXXXXXXXXAEPGAGTLLVSGSCDGTVRVWDCSSGTCLDVLRQEPCEEYMHDGLSQSVRCMQVCGSTVVVGADRSIAQWRLGSYGSAAEKAGLSAAAVCLRKYCSFMHGRAQLCVWQLGSASVGNGALAPTHDWFRSRAHSCAPARVRRAHRALLVRVWDVRSGRCVREVVGRSGAAILSFRLSGTTLFSCSLFEQSVLATHFCP 392
BLAST of mRNA_P-lacustris_contig986.16161.1 vs. uniprot
Match: A0A072VPK7_MEDTR (Putative transcription factor WD40-like family n=1 Tax=Medicago truncatula TaxID=3880 RepID=A0A072VPK7_MEDTR) HSP 1 Score: 76.6 bits (187), Expect = 5.970e-11 Identity = 61/200 (30.50%), Postives = 93/200 (46.50%), Query Frame = 1
Query: 1843 CGEQGDQRAVLFTGSDDGTAKAWDASSGRFVRLYAGH---TRGITCLQATFTKSYGPALVTGGGDSSVMIWELATGRCLEKLETGAGLVANPGRPGPRVGCLQVYNELIVVGEDRYVSVWSLRRGERPRLARTSFCEHQRPIRRLDMVGP-WIVTCSGDYLIRLWDSKTGLCVREL-GTKSGAAIISFRLSGLRLLTASL 2427
CG+ + TGSDD T + W+ SG + + GH T GITCL T + +TG D SV I + TGR + L + + + VG + + G D+ +++W + LAR S CEH+ + +G ++ T S D +RLWDS++G CVR G +S + L++ASL
Sbjct: 211 CGDFTPDGRTICTGSDDATLRIWNPKSGESIHVVRGHPYHTEGITCLAINSTSTIA---LTGSVDGSVHIVNITTGRVVSTLPSHSSSIEC-------VGFAPSGSWAAIGGMDK-MTIWDVEHS----LAR-SICEHEYGVTCSTWLGTSYVATGSNDGAVRLWDSRSGECVRTFRGHSESIQSLSLSANQEYLVSASL 394
BLAST of mRNA_P-lacustris_contig986.16161.1 vs. uniprot
Match: A0A6A5QUM9_AMPQU (WD40-repeat-containing domain protein n=1 Tax=Ampelomyces quisqualis TaxID=50730 RepID=A0A6A5QUM9_AMPQU) HSP 1 Score: 69.7 bits (169), Expect = 1.950e-8 Identity = 52/185 (28.11%), Postives = 80/185 (43.24%), Query Frame = 1
Query: 1903 KAWDASSGRFVRLYAGHTRGITCLQATFTKSYGPALVTGGGDSSVMIWELATGRCLEKL----------------ETGAGLVANPGRPGPRVG----------------CLQVYNELIVVGEDRYVS-VWSLRRGERPRLARTSFCEHQRPIRRLDMVGPWIVTCSGDYLIRLWDSKTGLCVREL 2358
K W A + + L GHT + C Q TK+ +TG D ++ +W+L T RCL+ E +++NP G G CLQ NE++V G Y VW + E + R H+ + + + +I++CS D +I++WD KTGLC+R L
Sbjct: 362 KRWRAGTPAAIYLN-GHTDSVYCCQFDETKA-----ITGSRDRTIRVWDLETYRCLKVYGGPNHRPVTNTPPPMEERPERVISNPSMNGTNKGNDIYCVPADYHDASILCLQYDNEIMVTGSSDYTCIVWDITGDEFVPMHRLR--GHEAGVLDVCLDDKYIISCSKDAMIKVWDRKTGLCIRTL 538
BLAST of mRNA_P-lacustris_contig986.16161.1 vs. uniprot
Match: A0A3M6VFA8_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VFA8_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 3.200e-7 Identity = 59/198 (29.80%), Postives = 85/198 (42.93%), Query Frame = 1
Query: 1870 VLFTGSDDGTAKAWDASSGRFVRLYA-GHTRGI------TCLQATFTKSYGPALVTGGG-DSSVMIWELATGRCLEKLETGAGLVA----NPGRPGPRVGCLQVYNELIVVGEDRYVSVWSLRRGERPR-LARTSFCEHQRPIRRLDMVGPWIVTCSGDYLIRLWDSKTGLCVRELGTKSGAAIISFRLSGLRLLTAS 2424
+LF+GS DGT +AW+A +G A G RG+ C++A S ALV G G D +W + TGR ++ L G V +P P +E+I DR + VW + RG R + ++ S C + + D +R WD++T CV+EL S G LLT S
Sbjct: 249 ILFSGSSDGTVRAWEAEAGALSSPRALGEYRGVGTAHPLLCVRA----SEDGALVLGTGCDRKCFVWRVGTGRVMQTLTGHKGKVLAAEFSPVLP----------HEVITGSSDRSLRVWDVMRGVRLQTISCVSSCNDIAAPSGANATFVQFASAHQDGAVRFWDTRTRRCVQELQGVHTEQTTSVSFGGNELLTNS 432
BLAST of mRNA_P-lacustris_contig986.16161.1 vs. uniprot
Match: A0A225VRZ7_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VRZ7_9STRA) HSP 1 Score: 63.5 bits (153), Expect = 6.450e-7 Identity = 54/194 (27.84%), Postives = 80/194 (41.24%), Query Frame = 1
Query: 1870 VLFTGSDDGTAKAWDASSGRFVRLYA-GHTRGITC---LQATFTKSYGPALVTGGGDSSVMIWELATGRCLEKLETGAGLVA----NPGRPGPRVGCLQVYNELIVVGEDRYVSVWSLRRGERPR-LARTSFCEHQRPIRRLDMVGPWIVTCSGDYLIRLWDSKTGLCVRELGTKSGAAIISFRLSGLRLLTAS 2424
+LF+GS DGT +AW+A + A G RG+ L T G ++ G D +W + TGR ++ L G V +P P +E++ DR + VW + RG R + ++ S C D + D +R WD++T CV+EL S G LLT S
Sbjct: 56 ILFSGSSDGTVRAWEAEAASLTPPRALGEYRGVGTAHPLLCVRTSEDGSLVLGTGCDRKCFVWRVGTGRVMQTLTGHKGKVLAAEFSPVMP----------HEVVTGSSDRSLRVWDVMRGVRLQTVSCVSSCNDIAAPTGYDAGFVQFASAHQDGAVRFWDTRTRRCVQELHGLHTEQTTSVSFGGNSLLTNS 239
BLAST of mRNA_P-lacustris_contig986.16161.1 vs. uniprot
Match: A0A8K0R1F0_9PLEO (WD40-repeat-containing domain protein n=1 Tax=Paraphoma chrysanthemicola TaxID=798071 RepID=A0A8K0R1F0_9PLEO) HSP 1 Score: 64.7 bits (156), Expect = 6.880e-7 Identity = 49/188 (26.06%), Postives = 79/188 (42.02%), Query Frame = 1
Query: 1894 GTAKAWDASSGRFVRLYAGHTRGITCLQATFTKSYGPALVTGGGDSSVMIWELATGRCLEKL----------------ETGAGLVANPGRPGPRVG----------------CLQVYNELIVVGEDRYVS-VWSLRRGERPRLARTSFCEHQRPIRRLDMVGPWIVTCSGDYLIRLWDSKTGLCVREL 2358
G K W ++ + L GHT + C Q TK+ +TG D ++ +W+L T +CL+ E +++NP G G CLQ NE++V G Y VW + + R H+ + + + +I++CS D +I++WD KTG C+R L
Sbjct: 357 GINKKWTSAKPAAIYLN-GHTDSVYCCQFDETKA-----ITGSRDRTIRVWDLKTYKCLKVYGGPNHRPVHNTPAPMEERPERVISNPSMNGTAAGHNIYVVPSDYHDASILCLQYDNEIMVTGSSDYTCIVWDITGETYVPMHRLR--GHEAGVLDVCLDDKYIISCSKDAMIKVWDRKTGTCIRTL 536
BLAST of mRNA_P-lacustris_contig986.16161.1 vs. uniprot
Match: W9QVN4_9ROSA (WD repeat-containing protein 5 n=1 Tax=Morus notabilis TaxID=981085 RepID=W9QVN4_9ROSA) HSP 1 Score: 63.2 bits (152), Expect = 7.140e-7 Identity = 33/98 (33.67%), Postives = 52/98 (53.06%), Query Frame = 1
Query: 1897 TAKAWDASSGRFVRLYAGHTRGITCLQATFTKSYGPALVTGGGDSSVMIWELATGRCLEKLETGAGLVANPGRPGPRVGCLQVYNELIVVGEDRYVSV 2190
T K W+ S+GRF+++YAGH C+ +TF+ + G +V+G D V +W+L ++KLE G V + V C N++ G D +SV
Sbjct: 218 TLKLWNYSTGRFLKVYAGHVNKEYCITSTFSVTNGKYIVSGSEDRCVYLWDLQHKNMVQKLEGHTGTVIS-------VSCHPTENKIASAGLDNDISV 308
BLAST of mRNA_P-lacustris_contig986.16161.1 vs. uniprot
Match: A0A1Y2M8Q3_EPING (F-box domain-containing protein n=1 Tax=Epicoccum nigrum TaxID=105696 RepID=A0A1Y2M8Q3_EPING) HSP 1 Score: 64.3 bits (155), Expect = 9.150e-7 Identity = 48/185 (25.95%), Postives = 79/185 (42.70%), Query Frame = 1
Query: 1903 KAWDASSGRFVRLYAGHTRGITCLQATFTKSYGPALVTGGGDSSVMIWELATGRCLEKL----------------ETGAGLVANPGRPGPRVG----------------CLQVYNELIVVGEDRYVS-VWSLRRGERPRLARTSFCEHQRPIRRLDMVGPWIVTCSGDYLIRLWDSKTGLCVREL 2358
K W A + + L GHT + C Q K +TG D ++ +W+L T +CL+ E +++NP G + G CLQ +E++V G Y VW + E + R H+ + + + +I++CS D +I++WD KTG+C+R L
Sbjct: 374 KRWKAGTPAAIYLN-GHTDSVYCCQFDENKC-----ITGSRDRTIRVWDLKTYKCLKVYGGPNHRPTLNTPLPMEERSERVISNPSVNGTKQGNSIYHVPADYHDASILCLQYDHEIMVTGSSDYTCIVWDITGDEYVPMYRLR--GHEAGVLDVCLDDKYIISCSKDAMIKVWDRKTGVCIRTL 550
BLAST of mRNA_P-lacustris_contig986.16161.1 vs. uniprot
Match: A0A8K1FDF2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FDF2_PYTOL) HSP 1 Score: 63.9 bits (154), Expect = 9.700e-7 Identity = 58/191 (30.37%), Postives = 84/191 (43.98%), Query Frame = 1
Query: 1870 VLFTGSDDGTAKAWDASSGRFVRLYAGHTRGITCLQATFTKSYGPALVTGGGDSSVMIWELATGRCLEKL--ETGAGLVANPGRPGPRVGCLQVYNELIVVGEDRYVSVWSLRRGERPRL--ARTSFCEHQRPIRRLDMVGPWIVTCSGDYLIRLWDSKTGLCVRELGTKSGAAI--ISFRLSGLRLLTAS 2424
VLF+GS DGT +AW+A+S R + Y G L ++ G L TG D +W + TGR + L G L A P NE+I DR + VW + RG + R+S + P VG + D ++R WDS++ V+E+ + +SF G R+LT S
Sbjct: 261 VLFSGSSDGTVRAWEAASCRPMGEYRGIGTAHPLLCVRVSEDGGMVLGTGC-DRKCFVWRVGTGRVFQTLTGHKGKVLAAEFSTISP--------NEVITGSSDRSMRVWDVSRGLSVQSINCRSSCNDVAMP------VGGQFASAHHDGVVRFWDSRSKQMVQEVKDIHDDQVTSVSFARDGNRVLTNS 436 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig986.16161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig986.16161.1 >prot_P-lacustris_contig986.16161.1 ID=prot_P-lacustris_contig986.16161.1|Name=mRNA_P-lacustris_contig986.16161.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=761bp MGSLRVDPGPLNDGGSDEREIVAGLRAVAAVAGGNGVDGRGPGRTLVALPback to top mRNA from alignment at P-lacustris_contig986:49355..56462- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig986.16161.1 ID=mRNA_P-lacustris_contig986.16161.1|Name=mRNA_P-lacustris_contig986.16161.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=7108bp|location=Sequence derived from alignment at P-lacustris_contig986:49355..56462- (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig986:49355..56462- >mRNA_P-lacustris_contig986.16161.1 ID=mRNA_P-lacustris_contig986.16161.1|Name=mRNA_P-lacustris_contig986.16161.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=4566bp|location=Sequence derived from alignment at P-lacustris_contig986:49355..56462- (Pleurocladia lacustris SAG_25_93)back to top |