mRNA_P-lacustris_contig98.16115.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig98.16115.1
Unique NamemRNA_P-lacustris_contig98.16115.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
BLAST of mRNA_P-lacustris_contig98.16115.1 vs. uniprot
Match: A0A6H5JWN2_9PHAE (Methyltransf_25 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JWN2_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 3.160e-59
Identity = 96/112 (85.71%), Postives = 108/112 (96.43%), Query Frame = 3
Query:  258 RDVIAEAYRLLKPGGSLAIMDMDPDAPGYKKLKSNPLLFSVVSATEPYLNRWFSLAPRIHLVLADAGFSVVRKAAVTGRHFLVVATKAGSIDLRPTDRAREAMDEHLSTWET 593
            RDV+AEAYRLLKPGGSLAIMDMDPDAPGYKKL+SNP LF++V ATEPYL++WF+LAPRIH +LA+ GFSVVRKAAVTGRHFLVVATKAGS+DLRP+DRAREAMDEHLSTW+T
Sbjct:  310 RDVLAEAYRLLKPGGSLAIMDMDPDAPGYKKLRSNPFLFAIVRATEPYLDQWFNLAPRIHHLLAETGFSVVRKAAVTGRHFLVVATKAGSLDLRPSDRAREAMDEHLSTWQT 421          
BLAST of mRNA_P-lacustris_contig98.16115.1 vs. uniprot
Match: A0A6H5LIS9_9PHAE (Methyltransf_25 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LIS9_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.690e-30
Identity = 60/109 (55.05%), Postives = 81/109 (74.31%), Query Frame = 3
Query:  258 RDVIAEAYRLLKPGGSLAIMDMDPDAPGYKKLKSNPLLFSVVSATEPYLNRWFSLAPRIHLVLADAGFSVVRKAAVTGRHFLVVATKAGSIDLRPTDRAREAMDEHLST 584
            R ++AEA+R+L+PGGS++IM+MDP APGY KL++NP+LFS++ +TEPYL+ +FS A  I   L +AGF+ VRK+ VTGRH  VV  K G+ DLR   + RE  D HL T
Sbjct:  286 RSILAEAFRILRPGGSVSIMEMDPSAPGYIKLRNNPMLFSILRSTEPYLDVYFSEAGNIDAELQEAGFATVRKSGVTGRHMAVVGVKGGTFDLRADFKQREKDDTHLQT 394          
BLAST of mRNA_P-lacustris_contig98.16115.1 vs. uniprot
Match: A0A7S3UW00_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UW00_HETAK)

HSP 1 Score: 115 bits (288), Expect = 2.420e-26
Identity = 54/91 (59.34%), Postives = 68/91 (74.73%), Query Frame = 3
Query:  261 DVIAEAYRLLKPGGSLAIMDMDPDAPGYKKLKSNPLLFSVVSATEPYLNRWFSLAPRIHLVLADAGFSVVRKAAVTGRHFLVVATKAGSID 533
            D + EA RLL+PGG+LAIM+MDP+APGY KL+ NP L++V+ +TEPYL  WF+LAP I  ++ DAGF VV K A TGRHF +VA   G  D
Sbjct:  272 DCLREARRLLRPGGALAIMEMDPEAPGYIKLRQNPFLYAVLRSTEPYLEEWFNLAPSIEELVMDAGFPVVTKTAATGRHFALVARAPGCAD 362          
BLAST of mRNA_P-lacustris_contig98.16115.1 vs. uniprot
Match: A0A7S0SWC6_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SWC6_9STRA)

HSP 1 Score: 108 bits (270), Expect = 3.980e-24
Identity = 50/110 (45.45%), Postives = 72/110 (65.45%), Query Frame = 3
Query:  261 DVIAEAYRLLKPGGSLAIMDMDPDAPGYKKLKSNPLLFSVVSATEPYLNRWFSLAPRIHLVLADAGFSVVRKAAVTGRHFLVVATKAGSIDLRPTDRAREAMDEHLSTWE 590
            D++ EAYR+LKPGG L+I++MDP +PGY KL+  PLL+S++ +TEPYL+ +F L   +  VL + GF +V     TGRH   ++ K G+ID R +D  R  +D H    E
Sbjct:  203 DILKEAYRILKPGGKLSILEMDPQSPGYVKLRQTPLLYSIIRSTEPYLDEYFGLFSSLPSVLNEIGFPIVSFKEATGRHSTFISIKPGNIDYRVSDIERLKIDSHAQPLE 312          
BLAST of mRNA_P-lacustris_contig98.16115.1 vs. uniprot
Match: A0A836CP77_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP77_9STRA)

HSP 1 Score: 109 bits (273), Expect = 5.650e-24
Identity = 53/94 (56.38%), Postives = 73/94 (77.66%), Query Frame = 3
Query:  258 RDVIAEAYRLLKPGGSLAIMDMDPDAPGYKKLKSNPLLFSVVSATEPYLNRWFSLAPRIHLVLADAGFSVVRKAAVTGRHFLVVATKAGSIDLR 539
            R + AEA R+LKPGG+L IM+MDPDAPG  KL++N +LFS++ +TEPYL+++F+ A  +   L + GF VVR+AA TGRH  +VA KAG++DLR
Sbjct:  241 RAIFAEALRILKPGGALGIMEMDPDAPGQVKLRANAVLFSIMKSTEPYLDQYFASAGNLAEELLEVGFPVVREAAATGRHKGMVAFKAGAVDLR 334          
BLAST of mRNA_P-lacustris_contig98.16115.1 vs. uniprot
Match: A0A836CDV1_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDV1_9STRA)

HSP 1 Score: 102 bits (254), Expect = 2.780e-21
Identity = 47/98 (47.96%), Postives = 73/98 (74.49%), Query Frame = 3
Query:  258 RDVIAEAYRLLKPGGSLAIMDMDPDAPGYKKLKSNPLLFSVVSATEPYLNRWFSLAPRIHLVLADAGFSVVRKAAVTGRHFLVVATKAGSIDLRPTDR 551
            RD+ A+A R+LKPGG+L ++DMDP+ P  ++++SN + +S++ +TEPYL+++F+ AP +   L + GF+VVR+AAV+ R   VVA KAG+ DLR   R
Sbjct:  317 RDIFAQALRVLKPGGALCMLDMDPEGPDSRRVRSNVVAYSILKSTEPYLDQYFAAAPALRQELTECGFAVVREAAVSPRLKAVVAIKAGTTDLRTASR 414          
BLAST of mRNA_P-lacustris_contig98.16115.1 vs. uniprot
Match: A0A7S4B5T4_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B5T4_CHRCT)

HSP 1 Score: 102 bits (254), Expect = 3.070e-21
Identity = 55/118 (46.61%), Postives = 77/118 (65.25%), Query Frame = 3
Query:  258 RDVIAEAYRLLKPGGSLAIMDMDPDAPGYKKLKSNPLLFSVVSATEPYLNRWFSLAPRIHLVLADAGFSVVRKAAVTGRHFLVVATKAGS-------IDLRPTDRAREAMDEHLSTWE 590
            RD++AEA+R+L+PGG L I +MD    G++KL++NPLLFS++ ATEPYL+++    P++   L   GF  +  AA TGRHF +VATK          ID R  + A+E  D HL+TWE
Sbjct:  306 RDIVAEAFRVLRPGGQLWITEMDFSTQGFRKLRANPLLFSLIRATEPYLDQYADYQPQLPDDLLATGFRDICLAAATGRHFALVATKPRDGREGRTEIDDRRLETAKE--DTHLNTWE 421          
BLAST of mRNA_P-lacustris_contig98.16115.1 vs. uniprot
Match: A0A7S1RG62_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1RG62_ALECA)

HSP 1 Score: 98.2 bits (243), Expect = 6.560e-20
Identity = 61/128 (47.66%), Postives = 79/128 (61.72%), Query Frame = 3
Query:  252 IGRDVIAEAYRLLKPGGSLAIMDMDPDAPGYKKLKSNPLLFSVVSATEPYLNRWFSLAPRI--HLVLADAGFSVVRKAAVTGRHFLVVATKAGS-------IDLRPTDRARE--AMDEHLSTWET*ST 602
            + R V AEA+R+L+PGG L I +MD  AP Y +L++N LLFS++ ATEPYL+ +   + ++  HL  AD GF  VR AA TGRHF +VATK GS       ID R  D        D HL TWE+ S+
Sbjct:  251 VTRSVCAEAFRILRPGGQLWISEMDFRAPAYAELRANALLFSLIRATEPYLDLYADSSEQLFQHLA-ADIGFQSVRIAAATGRHFALVATKHGSGSGSEGVIDDRRFDAEGNYAVEDTHLKTWESKSS 377          
BLAST of mRNA_P-lacustris_contig98.16115.1 vs. uniprot
Match: A0A7S1UKX4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UKX4_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 4.640e-19
Identity = 55/140 (39.29%), Postives = 81/140 (57.86%), Query Frame = 3
Query:  261 DVIAEAYRLLKPGGSLAIMDMDPD-APGYKKLKSNPLLFSVVSATEPYLNRWFSLAPRIHLVLADAGFSVVRKAAVTGRHFLVVATK----------------AGS-------------IDLRPTDRAREAMDEHLSTWE 590
            D+++E YR+LKPGG++ +M+MD + APGY++L+ NPLL+S++ +TEPYL+ +F  A  I   LA  GF    +++ TGRHF +VA K                AG+             +DLR  +   EA DEHL +WE
Sbjct:   72 DMLSECYRILKPGGAVCVMEMDGNVAPGYRELRRNPLLYSLIRSTEPYLDDYFRSAEDIPAKLAKLGFDAAVQSSATGRHFTLVAFKGEAEGGGAGVLDGLSGAGAEGAVARDVGGMRYLDLRTEEAYLEA-DEHLLSWE 210          
BLAST of mRNA_P-lacustris_contig98.16115.1 vs. uniprot
Match: A0A8J5X8B6_DIALT (Methyltransf_25 domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X8B6_DIALT)

HSP 1 Score: 88.6 bits (218), Expect = 1.800e-16
Identity = 54/121 (44.63%), Postives = 75/121 (61.98%), Query Frame = 3
Query:  258 RDVIAEAYRLLKPGGSLAIMDMDPDAPGYKKLKSNPLLFSVVSATEPYLNRWFSLAPRIHLV--LADAGFSVVRKAAVTGRHFLVVATKAGSIDLRPT------DRAREAM--DEHLSTWE 590
            R V  EA R+L+PGG L + +MD +  GY+KL++N LL+S++ +TEPYL+  +++     +V  L DAGF VVR AA TGRHF +VA+   + D  P       DR RE    D HL TW+
Sbjct:  253 RAVFREAARVLRPGGQLWVGEMDFETDGYRKLRANALLYSLIRSTEPYLDE-YAMYQSAGMVDDLFDAGFGVVRLAAATGRHFALVASMPAA-DAAPVGGRVLDDRRRETAMADTHLPTWQ 371          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig98.16115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWN2_9PHAE3.160e-5985.71Methyltransf_25 domain-containing protein n=2 Tax=... [more]
A0A6H5LIS9_9PHAE1.690e-3055.05Methyltransf_25 domain-containing protein n=2 Tax=... [more]
A0A7S3UW00_HETAK2.420e-2659.34Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S0SWC6_9STRA3.980e-2445.45Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A836CP77_9STRA5.650e-2456.38S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A836CDV1_9STRA2.780e-2147.96S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A7S4B5T4_CHRCT3.070e-2146.61Hypothetical protein n=2 Tax=Chrysotila carterae T... [more]
A0A7S1RG62_ALECA6.560e-2047.66Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A7S1UKX4_9STRA4.640e-1939.29Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A8J5X8B6_DIALT1.800e-1644.63Methyltransf_25 domain-containing protein n=2 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig98contigP-lacustris_contig98:161546..162380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score208.4
Seed ortholog evalue2.1e-51
Seed eggNOG ortholog2880.D8LD42
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Methyltransferase domain
EggNOG OGs2B2D0@1,2S0CH@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size835
Cds size396
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig98.16115.1prot_P-lacustris_contig98.16115.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig98 161746..162141 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817411.547895-UTR-P-lacustris_contig98:161545..1617451622817411.547895-UTR-P-lacustris_contig98:161545..161745Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig98 161546..161745 +
1693495047.6725895-UTR-P-lacustris_contig98:161545..1617451693495047.6725895-UTR-P-lacustris_contig98:161545..161745Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig98 161546..161745 +
1622817411.5748725-UTR-P-lacustris_contig98:162141..1623801622817411.5748725-UTR-P-lacustris_contig98:162141..162380Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig98 162142..162380 +
1693495047.698027-UTR-P-lacustris_contig98:162141..1623801693495047.698027-UTR-P-lacustris_contig98:162141..162380Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig98 162142..162380 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817411.5624645-CDS-P-lacustris_contig98:161745..1621411622817411.5624645-CDS-P-lacustris_contig98:161745..162141Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig98 161746..162141 +
1693495047.684648-CDS-P-lacustris_contig98:161745..1621411693495047.684648-CDS-P-lacustris_contig98:161745..162141Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig98 161746..162141 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig98.16115.1

>prot_P-lacustris_contig98.16115.1 ID=prot_P-lacustris_contig98.16115.1|Name=mRNA_P-lacustris_contig98.16115.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=132bp
MSLSSKHCHCYESVTYIIGRDVIAEAYRLLKPGGSLAIMDMDPDAPGYKK
LKSNPLLFSVVSATEPYLNRWFSLAPRIHLVLADAGFSVVRKAAVTGRHF
LVVATKAGSIDLRPTDRAREAMDEHLSTWET*
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mRNA from alignment at P-lacustris_contig98:161546..162380+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig98.16115.1 ID=mRNA_P-lacustris_contig98.16115.1|Name=mRNA_P-lacustris_contig98.16115.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=835bp|location=Sequence derived from alignment at P-lacustris_contig98:161546..162380+ (Pleurocladia lacustris SAG_25_93)
GGCTACCTGACGGCAGCGCTTCCTGGTGTCATGCACCTACCTGCTGCACG AGATGCCGGACGAGGCCGTAAGGTGCGCGTAGTCTTGATTGCTGTCAGTA GCTCGTGTCGATGCTATCACCGTTTAGTTAGGTGTTTGATAGAATGTTGC GATTCCCAATGGCACGAAATGCTGATTGATACCTCTGTGCCTTTTCCTGG ATGTCTCTATCCTCCAAACACTGCCATTGCTATGAATCGGTGACCTACAT CATCGGCAGGGACGTGATCGCCGAGGCTTACCGTCTGCTCAAACCCGGAG GAAGTCTCGCCATCATGGACATGGACCCGGACGCCCCCGGTTACAAGAAG CTGAAGTCTAACCCCCTGCTCTTCTCTGTCGTTAGCGCCACCGAACCGTA CCTCAACCGCTGGTTCAGCCTCGCCCCTCGTATCCACCTCGTCCTGGCGG ATGCCGGGTTCAGCGTGGTACGGAAGGCGGCGGTAACAGGGAGACATTTC CTCGTGGTGGCCACCAAGGCCGGCTCTATCGACCTCCGTCCTACCGATCG CGCCAGAGAGGCCATGGACGAGCACCTCAGCACGTGGGAGACTTGATCCA CTTGATATGAGCGGTCTGTTGGCATGCACTGTATGTAGTAGGCAAGCGTC CAGTGATGCCTTGCTGGTATTTCTGCTTGTTTCTTCCTGGTTGTAGATGG AGATGGCCTACGCGTGTCGTGTCACATGTGTTCATTTTGTTCGGTTGGGG GAAAGAGTTCGCGAGAAACGGCCTGATCTATCTGTGAACACGACACCATG GGCGCAACATCTCATTTGGCAATGAGATGATATTT
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Coding sequence (CDS) from alignment at P-lacustris_contig98:161546..162380+

>mRNA_P-lacustris_contig98.16115.1 ID=mRNA_P-lacustris_contig98.16115.1|Name=mRNA_P-lacustris_contig98.16115.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=792bp|location=Sequence derived from alignment at P-lacustris_contig98:161546..162380+ (Pleurocladia lacustris SAG_25_93)
ATGTCTCTATCCTCCAAACACTGCCATTGCTATGAATCGGTGACCTACAT
CATCGGCAGGGACGTGATCGCCGAGGCTTACCGTCTGCTCAAACCCGGAG
GAAGTCTCGCCATCATGGACATGGACCCGGACGCCCCCGGTTACAAGAAG
CTGAAGTCTAACCCCCTGCTCTTCTCTGTCGTTAGCGCCACCGAACCGTA
CCTCAACCGCTGGTTCAGCCTCGCCCCTCGTATCCACCTCGTCCTGGCGG
ATGCCGGGTTCAGCGTGGTACGGAAGGCGGCGGTAACAGGGAGACATTTC
CTCGTGGTGGCCACCAAGGCCGGCTCTATCGACCTCCGTCCTACCGATCG
CGCCAGAGAGGCCATGGACGAGCACCTCAGCACGTGGGAGACTTGAATGT
CTCTATCCTCCAAACACTGCCATTGCTATGAATCGGTGACCTACATCATC
GGCAGGGACGTGATCGCCGAGGCTTACCGTCTGCTCAAACCCGGAGGAAG
TCTCGCCATCATGGACATGGACCCGGACGCCCCCGGTTACAAGAAGCTGA
AGTCTAACCCCCTGCTCTTCTCTGTCGTTAGCGCCACCGAACCGTACCTC
AACCGCTGGTTCAGCCTCGCCCCTCGTATCCACCTCGTCCTGGCGGATGC
CGGGTTCAGCGTGGTACGGAAGGCGGCGGTAACAGGGAGACATTTCCTCG
TGGTGGCCACCAAGGCCGGCTCTATCGACCTCCGTCCTACCGATCGCGCC
AGAGAGGCCATGGACGAGCACCTCAGCACGTGGGAGACTTGA
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