mRNA_P-lacustris_contig98.16112.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig98.16112.1
Unique NamemRNA_P-lacustris_contig98.16112.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig98.16112.1 vs. uniprot
Match: A0A6H5JWG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWG2_9PHAE)

HSP 1 Score: 291 bits (746), Expect = 2.990e-95
Identity = 146/189 (77.25%), Postives = 157/189 (83.07%), Query Frame = 1 
Query:    1 QRQQRSSMSLGGNFEMPHVTKKRKKQGFGGGKAKIPAEKGKTLTTGEAVARHMLQEYNAIKADGGMVARLYARLKETEEWYPVGYVCTPQPGWTAQGTQGQKRLILDHASEMYSQLRSGAGKKLVLEAGYGPEEGAEGEINLCKGIKYNGERVGVALDPLPDGPFFKAVTDDGFGVDKSPAATLRDNKK 567
            QRQQ         FEMPH T KRKKQGFGGG+AK P ++GKTLTTGEAVARHML EYNAIKA+GG VARLYARLK+ ++WYPVG VCT + GWTAQG QGQKRLILDHASEMYSQLRSGAGK LVLEAGYGP EG +GEI +CKGIKYNGERVGVALDPLPDGPFFK V   GFG D+S AATL D KK
Sbjct:   45 QRQQGGRPLSMSGFEMPHQTAKRKKQGFGGGRAKKPPQQGKTLTTGEAVARHMLSEYNAIKAEGGKVARLYARLKDADDWYPVGNVCT-EAGWTAQGAQGQKRLILDHASEMYSQLRSGAGKMLVLEAGYGPVEGDDGEITVCKGIKYNGERVGVALDPLPDGPFFKGVAKGGFGADRSSAATLMDKKK 232
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BLAST of mRNA_P-lacustris_contig98.16112.1 vs. uniprot
Match: D8LD44_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD44_ECTSI)

HSP 1 Score: 292 bits (747), Expect = 3.590e-94
Identity = 147/189 (77.78%), Postives = 158/189 (83.60%), Query Frame = 1 
Query:    1 QRQQRSSMSLGGNFEMPHVTKKRKKQGFGGGKAKIPAEKGKTLTTGEAVARHMLQEYNAIKADGGMVARLYARLKETEEWYPVGYVCTPQPGWTAQGTQGQKRLILDHASEMYSQLRSGAGKKLVLEAGYGPEEGAEGEINLCKGIKYNGERVGVALDPLPDGPFFKAVTDDGFGVDKSPAATLRDNKK 567
            QRQQ         FEMPH T+KRKKQGFGGG+AK P ++GKTLTTGEAVARHML EYNAIKA+GG VARLYARLK+ ++WYPVG VCT + GWTAQG QGQKRLILDHASEMYSQLRSGAGKKLVLEAGYG  EG +GEI +CKGIKYNGERVGVALDPLPDGPFFK V   GFG DKS AATL D KK
Sbjct:  130 QRQQGGRPLSMSGFEMPHQTEKRKKQGFGGGRAKKPPQQGKTLTTGEAVARHMLLEYNAIKAEGGKVARLYARLKDADDWYPVGNVCT-EAGWTAQGAQGQKRLILDHASEMYSQLRSGAGKKLVLEAGYGSVEGDDGEITVCKGIKYNGERVGVALDPLPDGPFFKGVAKGGFGADKSSAATLMDKKK 317
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig98.16112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JWG2_9PHAE2.990e-9577.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LD44_ECTSI3.590e-9477.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig98contigP-lacustris_contig98:148021..151133 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_000390.1
Exons3
Model size1042
Cds size549
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig98.16112.1prot_P-lacustris_contig98.16112.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig98 148042..150661 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817411.3607523-UTR-P-lacustris_contig98:148020..1480411622817411.3607523-UTR-P-lacustris_contig98:148020..148041Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig98 148021..148041 +
1693495047.5436373-UTR-P-lacustris_contig98:148020..1480411693495047.5436373-UTR-P-lacustris_contig98:148020..148041Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig98 148021..148041 +
1622817411.4095585-UTR-P-lacustris_contig98:150661..1511331622817411.4095585-UTR-P-lacustris_contig98:150661..151133Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig98 150662..151133 +
1693495047.5898032-UTR-P-lacustris_contig98:150661..1511331693495047.5898032-UTR-P-lacustris_contig98:150661..151133Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig98 150662..151133 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817411.3749204-CDS-P-lacustris_contig98:148041..1482751622817411.3749204-CDS-P-lacustris_contig98:148041..148275Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig98 148042..148275 +
1693495047.554786-CDS-P-lacustris_contig98:148041..1482751693495047.554786-CDS-P-lacustris_contig98:148041..148275Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig98 148042..148275 +
1622817411.3872101-CDS-P-lacustris_contig98:149766..1499431622817411.3872101-CDS-P-lacustris_contig98:149766..149943Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig98 149767..149943 +
1693495047.5669215-CDS-P-lacustris_contig98:149766..1499431693495047.5669215-CDS-P-lacustris_contig98:149766..149943Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig98 149767..149943 +
1622817411.3992102-CDS-P-lacustris_contig98:150523..1506611622817411.3992102-CDS-P-lacustris_contig98:150523..150661Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig98 150524..150661 +
1693495047.5758688-CDS-P-lacustris_contig98:150523..1506611693495047.5758688-CDS-P-lacustris_contig98:150523..150661Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig98 150524..150661 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig98.16112.1

>prot_P-lacustris_contig98.16112.1 ID=prot_P-lacustris_contig98.16112.1|Name=mRNA_P-lacustris_contig98.16112.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=183bp
MSLGGNFEMPHVTKKRKKQGFGGGKAKIPAEKGKTLTTGEAVARHMLQEY
NAIKADGGMVARLYARLKETEEWYPVGYVCTPQPGWTAQGTQGQKRLILD
HASEMYSQLRSGAGKKLVLEAGYGPEEGAEGEINLCKGIKYNGERVGVAL
DPLPDGPFFKAVTDDGFGVDKSPAATLRDNKK*
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mRNA from alignment at P-lacustris_contig98:148021..151133+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig98.16112.1 ID=mRNA_P-lacustris_contig98.16112.1|Name=mRNA_P-lacustris_contig98.16112.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=3113bp|location=Sequence derived from alignment at P-lacustris_contig98:148021..151133+ (Pleurocladia lacustris SAG_25_93)
CAGCGACAACAACGCAGCTCTATGAGCCTGGGTGGCAACTTCGAGATGCC
TCACGTGACTAAAAAGCGAAAGAAGCAAGGCTTCGGGGGGGGCAAGGCCA
AGATTCCCGCGGAGAAGGGGAAAACCTTGACTACGGGGGAGGCGGTAGCA
CGGCACATGCTTCAAGAGTACAACGCCATCAAGGCGGACGGGGGTATGGT
GGCGAGGTTGTACGCTAGGCTGAAGGAGACCGAGGAGTGGTATCCCGTCG
GATATGTGAGTGAGCCTCACATCGTGTCCTTTGTATCATCATCATTTCGA
GCAGTCCTTGCGCTTCGTTCCCGTCATTTGGCCCCTCTGTTTGGGATCGG
TTTTCACTGCCGGCAGGGAGAGCACATGCTATCTGAGGGGCGCCGGGCGG
TCCAGAAATCCAAAGTTCTTTTACCAAGCTTTGTGCGAAAGGGTTGAAAA
TGGGCAGTTGTTTGCTCTTGTTCTTTGGATACCCTCGCCCTCTCCGTTTC
GTAGGAAAAGAGTCTGTTTTACGGGTCAACAGTTGTTTCCGTCGGGAACC
AACGGGGTTTGACGGAACGACTACAGAAGAAGACGCGTTTACATCCTCCA
CAAACTTGTTTTCCGACCTCGATTCCCCCTCTACGGCGAAAACGATGCCG
ACACATACCTTGGTCTTCGGCAAGACGTGTTCTTACTAGCATAGGTGTTC
AAAGAGAGGCCAAGCGTAGTAAATACAGGCATATGATTCAGATGAGCGTG
GTCACCTTGAGGGTTAGATGCAGATTTGCTAGCGTGATGGCACAGAGGAT
AAGACAAAGTCCTTCCACGCAGGCACCAGCGGTGGCAAGCACACACACAT
GGGTAGGTTAGAAAGTATGTACGTATAGTACCCCTGCTTGGAAGTGGCAC
GCGTTCGTGCTAAAGGGTTCATCAAAGCACAAAGTTTTCTATAGAGCCTG
CCACAAAGTTTTCTAGGGAGCCTGCCGTGTGTCAGGACAACGCACCCAGA
TACAGTATCTACATAACTCTCCACTGAATGGTGCGTGGTTGCTAGAGACC
GCGAGGCGTAGGGAGGCTCATAAATAGAGTTTTGCGAGGTGCGACAGGTG
ACCACAGAAATGCTTCTCTTTTTTGGAAGGGGATGGGGGGTGATATTTGT
TACGCACTCGGGTGACCCCATTGCCCGGAGGCTGAGAGGCACGATTTTTC
TCAAAATCTGCGTGATAAGGTTCGCGCGAGACTGCGGGGGAGGGTGTGGA
ACCGTACGAGATTCAGGGCATCCACATTTCGATGAAGTCTGCTGCTTAGC
TTAAACTCTGATCAGTTCCTGGATTTGTGAAAGCCATATGTCTGGGGGTT
TTAACGCTTTCAGAGGCTTTCAGAGATGGTGGCCCCCCGGACAGAGCATG
GCGATTGGAGAGGGCGTGCTCCGCAAGAATTGGATGTGTGTGTGCGAATA
CCGCCACGACGTGGCTGTAGGTTGCGTGTATTACGAAAAAATCGGAGGGG
TCGAGAGTCCTATACCGAGAGTCCTATACTGAGAATTTTTGAGCCGCAAC
AGAAACTGAGTCTCATCTAAGCAGGGGCTTCAGAATACCTGACTTCAACT
GGCGCTGTTTTATTGCTTCAGACACCGCGCGGAGAACGAGCATACTAGCC
AAGCGATGCCTAGAAATGCATTTTTGTAACGTGTCACGCTCGCAACCTTA
ACGCTCGTTCAATCCTGTGGCCCCGTTATGGCATGTGATTGGTCAGGTGT
GCACGCCGCAGCCTGGGTGGACAGCGCAGGGCACCCAGGGGCAAAAGCGG
CTGATTCTGGATCACGCGAGCGAGATGTACTCGCAGTTGAGGTCAGGGGC
GGGCAAGAAATTGGTGCTGGAGGCCGGATACGGGCCTGAGGAAGGTGCTG
AGGGGGAAATCAACTTATGCAAGGTCAGAGAAACCCGAACACAGGAAGAA
GCTGGGCGTAGTTGTCCCCGAGGGTGTACAACACGACGGGTATGCGGTAG
ACTGCCCCCATATGTCCTTAGTTGCATCCGGCAGAATTGGGTGCGTAGAA
CGTGCTATAGGATGCCTATTGTCCGTTGGATTTGATCTATACGACACGCC
CCAGACATCCGTGGCGGAGGTTCTTCGCACTCCCACAATGGGTATACAAG
TAGTCGTCATCTGGAACGTATGTTGACGGACTGCTGTGTTGGTCTCAAGT
GTTGGATACCTCGTCAAGCTAAGCCAGTTCAAGTTAGGCGACGAGTATCC
TGATACTCGTCCTCTCTGCGGCACCAACATCGTTGCTCGATCTGTCTCCA
CTACCCTCCTCTACCACTCTACTTGTACTGCTGTCACGTCACTCGTTCTG
CTCCTCTCGTCCTCTTGTTGTCCTTCATCTTCGCCATCAAATCTCTCATC
TCTAAGCTTCATGCTCCTGGTCGACACATTACATGGGCCGTTTGTCCTCC
GTACTCATCAACTCCATACACCGCGACACGACCGGTATATTTTTTTATCG
CAGGGGATCAAGTACAACGGCGAGAGAGTAGGGGTTGCGCTCGACCCCCT
CCCCGACGGTCCTTTCTTCAAGGCAGTGACCGATGACGGATTTGGTGTAG
ACAAGTCCCCGGCAGCAACTCTCAGGGACAATAAGAAGTGAGCCGTCGTA
AATCTGAAAATATAGAGTAATATCGGCTGTGATAACTTTTCCAGTGCATT
CCAAGCGGTTTTTCTCCGCGGGCAATCGACCCCATCAACAGTGAATGCTT
TAGCCGCATCTGTTGAAGTCCAAGACAAGAAAGCGATTCTGGTTTGTCAT
GTAGGGGTACTGTATAATATATTGACTTACTGTATTTTGCAGGGGTGGAG
GGGGCATACATACCGTAGCTTGACGCCCGCGCAAATGCAGTGCCACCTAG
CTTCCCAACAGTGAGAGATTTGCGTACTGGTGGCAGCAAACTTTGTCGTT
GGCCAAGGCAGACGCAAAGCGCCACATATTTGAACTCGGCGATAAGATTT
CGGCTCTCAAGTACTCTCGGATTACCTTTTCATGGACAAGCAGGTCCAGC
TGGCTCAGGCTTTTGATTTTTTCTCGTTTTTCGTTAATTCTCGACGCCAG
CCTTCGTGACGTG
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Coding sequence (CDS) from alignment at P-lacustris_contig98:148021..151133+

>mRNA_P-lacustris_contig98.16112.1 ID=mRNA_P-lacustris_contig98.16112.1|Name=mRNA_P-lacustris_contig98.16112.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1098bp|location=Sequence derived from alignment at P-lacustris_contig98:148021..151133+ (Pleurocladia lacustris SAG_25_93)
ATGAGCCTGGGTGGCAACTTCGAGATGCCTCACGTGACTAAAAAGCGAAA
GAAGCAAGGCTTCGGGGGGGGCAAGGCCAAGATTCCCGCGGAGAAGGGGA
AAACCTTGACTACGGGGGAGGCGGTAGCACGGCACATGCTTCAAGAGTAC
AACGCCATCAAGGCGGACGGGGGTATGGTGGCGAGGTTGTACGCTAGGCT
GAAGGAGACCGAGGAGTGGTATCCCGTCGGATATATGAGCCTGGGTGGCA
ACTTCGAGATGCCTCACGTGACTAAAAAGCGAAAGAAGCAAGGCTTCGGG
GGGGGCAAGGCCAAGATTCCCGCGGAGAAGGGGAAAACCTTGACTACGGG
GGAGGCGGTAGCACGGCACATGCTTCAAGAGTACAACGCCATCAAGGCGG
ACGGGGGTATGGTGGCGAGGTTGTACGCTAGGCTGAAGGAGACCGAGGAG
TGGTATCCCGTCGGATATGTGTGCACGCCGCAGCCTGGGTGGACAGCGCA
GGGCACCCAGGGGCAAAAGCGGCTGATTCTGGATCACGCGAGCGAGATGT
ACTCGCAGTTGAGGTCAGGGGCGGGCAAGAAATTGGTGCTGGAGGCCGGA
TACGGGCCTGAGGAAGGTGCTGAGGGGGAAATCAACTTATGCAAGGTGTG
CACGCCGCAGCCTGGGTGGACAGCGCAGGGCACCCAGGGGCAAAAGCGGC
TGATTCTGGATCACGCGAGCGAGATGTACTCGCAGTTGAGGTCAGGGGCG
GGCAAGAAATTGGTGCTGGAGGCCGGATACGGGCCTGAGGAAGGTGCTGA
GGGGGAAATCAACTTATGCAAGGGGATCAAGTACAACGGCGAGAGAGTAG
GGGTTGCGCTCGACCCCCTCCCCGACGGTCCTTTCTTCAAGGCAGTGACC
GATGACGGATTTGGTGTAGACAAGTCCCCGGCAGCAACTCTCAGGGACAA
TAAGAAGTGAGGGATCAAGTACAACGGCGAGAGAGTAGGGGTTGCGCTCG
ACCCCCTCCCCGACGGTCCTTTCTTCAAGGCAGTGACCGATGACGGATTT
GGTGTAGACAAGTCCCCGGCAGCAACTCTCAGGGACAATAAGAAGTGA
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