mRNA_P-lacustris_contig974.16059.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig974.16059.1
Unique NamemRNA_P-lacustris_contig974.16059.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig974.16059.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig974contigP-lacustris_contig974:3822..4435 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size614
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig974.16059.1prot_P-lacustris_contig974.16059.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig974 3999..4349 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817404.405039-UTR-P-lacustris_contig974:3821..39981622817404.405039-UTR-P-lacustris_contig974:3821..3998Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig974 3822..3998 +
1693495041.821133-UTR-P-lacustris_contig974:3821..39981693495041.821133-UTR-P-lacustris_contig974:3821..3998Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig974 3822..3998 +
1622817404.434162-UTR-P-lacustris_contig974:4349..44351622817404.434162-UTR-P-lacustris_contig974:4349..4435Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig974 4350..4435 +
1693495041.8539164-UTR-P-lacustris_contig974:4349..44351693495041.8539164-UTR-P-lacustris_contig974:4349..4435Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig974 4350..4435 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817404.4167194-CDS-P-lacustris_contig974:3998..43491622817404.4167194-CDS-P-lacustris_contig974:3998..4349Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig974 3999..4349 +
1693495041.8376913-CDS-P-lacustris_contig974:3998..43491693495041.8376913-CDS-P-lacustris_contig974:3998..4349Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig974 3999..4349 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig974.16059.1

>prot_P-lacustris_contig974.16059.1 ID=prot_P-lacustris_contig974.16059.1|Name=mRNA_P-lacustris_contig974.16059.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=117bp
MSSSIPPGRWSAFFCSLALCCHPGCWVCRPNCRSYHLSVISLCVKHLKKH
YLVYLVYLVRRARQGPWYHFFCILSLLLSSFSSVGGKTFSGVSMGQSKQT
NLYLSSAFEVEPVHVT*
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mRNA from alignment at P-lacustris_contig974:3822..4435+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig974.16059.1 ID=mRNA_P-lacustris_contig974.16059.1|Name=mRNA_P-lacustris_contig974.16059.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=614bp|location=Sequence derived from alignment at P-lacustris_contig974:3822..4435+ (Pleurocladia lacustris SAG_25_93)
CACACACAGGTCACCAACGGCAGGGCGGTCTTTGACAGCAGGAGGTCAAA
GGTGATGATGATGGGGCCCCGTCGGAAACATATCATACCAAGCACGAAGT
AGTCATCAATTCATGAACCTTGCTCCAGCGCGTGGTCGAATGTCAGATTT
GGCTGGCGATGGAGATTTTCTGTTGAAATGTCATCGTCTATTCCACCCGG
TCGATGGTCTGCCTTTTTTTGCTCGCTCGCTCTTTGCTGCCATCCTGGTT
GCTGGGTGTGTCGGCCTAACTGTCGAAGCTACCATCTGTCTGTCATCTCT
CTGTGCGTCAAGCATTTAAAGAAGCATTATTTGGTTTATTTGGTTTATTT
GGTTCGGCGGGCTCGTCAAGGTCCTTGGTATCATTTTTTCTGTATCCTTT
CCTTACTTCTCTCAAGCTTCTCATCCGTTGGCGGAAAGACATTTAGTGGT
GTCTCGATGGGCCAATCAAAACAAACCAATCTCTATCTCTCTTCTGCTTT
TGAAGTTGAGCCGGTGCATGTGACGTGACTCATGCTTATCAGCATGCGCC
CTGCATCCAACAAAGAAGCTCCCAGCTCTCCGTAGGCAACAGCAGCACAA
CAGCAGTACCAGAG
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Coding sequence (CDS) from alignment at P-lacustris_contig974:3822..4435+

>mRNA_P-lacustris_contig974.16059.1 ID=mRNA_P-lacustris_contig974.16059.1|Name=mRNA_P-lacustris_contig974.16059.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=702bp|location=Sequence derived from alignment at P-lacustris_contig974:3822..4435+ (Pleurocladia lacustris SAG_25_93)
ATGTCATCGTCTATTCCACCCGGTCGATGGTCTGCCTTTTTTTGCTCGCT
CGCTCTTTGCTGCCATCCTGGTTGCTGGGTGTGTCGGCCTAACTGTCGAA
GCTACCATCTGTCTGTCATCTCTCTGTGCGTCAAGCATTTAAAGAAGCAT
TATTTGGTTTATTTGGTTTATTTGGTTCGGCGGGCTCGTCAAGGTCCTTG
GTATCATTTTTTCTGTATCCTTTCCTTACTTCTCTCAAGCTTCTCATCCG
TTGGCGGAAAGACATTTAGTGGTGTCTCGATGGGCCAATCAAAACAAACC
AATCTCTATCTCTCTTCTGCTTTTGAAGTTGAGCCGGTGCATGTGACGTG
AATGTCATCGTCTATTCCACCCGGTCGATGGTCTGCCTTTTTTTGCTCGC
TCGCTCTTTGCTGCCATCCTGGTTGCTGGGTGTGTCGGCCTAACTGTCGA
AGCTACCATCTGTCTGTCATCTCTCTGTGCGTCAAGCATTTAAAGAAGCA
TTATTTGGTTTATTTGGTTTATTTGGTTCGGCGGGCTCGTCAAGGTCCTT
GGTATCATTTTTTCTGTATCCTTTCCTTACTTCTCTCAAGCTTCTCATCC
GTTGGCGGAAAGACATTTAGTGGTGTCTCGATGGGCCAATCAAAACAAAC
CAATCTCTATCTCTCTTCTGCTTTTGAAGTTGAGCCGGTGCATGTGACGT
GA
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