mRNA_P-lacustris_contig971.16041.1 (mRNA) Pleurocladia lacustris SAG_25_93
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Overview
Homology
BLAST of mRNA_P-lacustris_contig971.16041.1 vs. uniprot
Match: A0A6H5KRK2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRK2_9PHAE) HSP 1 Score: 444 bits (1141), Expect = 9.350e-149 Identity = 235/283 (83.04%), Postives = 249/283 (87.99%), Query Frame = 1
Query: 1 MAEQGTRYASSAYLSVTDDANRWRAGPPQPQQLLLESKISMLMNTGQGLAIEKNLAKFDVKVMAAETRKQAWIKELGIGPKTSFVVYIIRVSRIRDGASCVSAQRYSELRSLYNQLKYEGQVRSEGAPEFPGKRMVTEESFLGDRSDANSEFVRQRKEKLGIFLRQLFNKNPAELWEHPDVKEFFNMEALDQGKSYAERAHTTAAAWNGVGHGLRNYDPSVPSQWNPYSVAMQAAQENRIRNTEFI-HNSDNXXXXXXXXXXXXXXXXXXXXXXXIGAWFRGI 846
MAEQGTRY S YLSVTDDANRWRAGPP+PQQL ESKI+MLMNTGQGLAIEKNLAKFDVKV+AAETRKQAWIK+LGIGPKTSFVVYIIRVSRIRDGASCVSAQRYSELRSLYN LK+EGQVRSEGAPEFPGKR+VTEESFLGDRSDANSEFVR RKE+LG FLRQLFNKNP ELWEHPDV EFFN+EALDQGKSYAERAH NGVGHGLRNYDPSV S+WNPYS+AMQAAQENR RNT ++ H++DN XXXXXXXXX IGAWFRGI
Sbjct: 1 MAEQGTRYTPSVYLSVTDDANRWRAGPPRPQQLTNESKINMLMNTGQGLAIEKNLAKFDVKVLAAETRKQAWIKDLGIGPKTSFVVYIIRVSRIRDGASCVSAQRYSELRSLYNHLKHEGQVRSEGAPEFPGKRVVTEESFLGDRSDANSEFVRHRKEQLGSFLRQLFNKNP-ELWEHPDVVEFFNLEALDQGKSYAERAHAAGGVGNGVGHGLRNYDPSVASEWNPYSIAMQAAQENRTRNTGYVAHSNDNNYRGGXXXXXXXXXGEDTGGG--IGAWFRGI 280
BLAST of mRNA_P-lacustris_contig971.16041.1 vs. uniprot
Match: D7FWZ4_ECTSI (PX domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWZ4_ECTSI) HSP 1 Score: 382 bits (980), Expect = 1.200e-128 Identity = 191/214 (89.25%), Postives = 198/214 (92.52%), Query Frame = 1
Query: 1 MAEQGTRYASSAYLSVTDDANRWRAGPPQPQQLLLESKISMLMNTGQGLAIEKNLAKFDVKVMAAETRKQAWIKELGIGPKTSFVVYIIRVSRIRDGASCVSAQRYSELRSLYNQLKYEGQVRSEGAPEFPGKRMVTEESFLGDRSDANSEFVRQRKEKLGIFLRQLFNKNPAELWEHPDVKEFFNMEALDQGKSYAERAHTTAAAWNGVGHGL 642
MAEQGTRY S YLSVTDDANRWRAGPPQPQQL ESKI+MLMNTGQGLAIEKNLAKFDVKV+AAETRKQAWIK+LGIGPKTSFVVYIIRVSRIRDGASCVSAQRYSELRSLYN LK+EGQVRSEGAPEFPGKR+VTEESFLGDRSDANSEFVR RKE+LG FLRQLFNKNP ELWEHPDV EFFN+EALDQGKSYAERAH NGVGHGL
Sbjct: 1 MAEQGTRYTPSVYLSVTDDANRWRAGPPQPQQLTNESKINMLMNTGQGLAIEKNLAKFDVKVLAAETRKQAWIKDLGIGPKTSFVVYIIRVSRIRDGASCVSAQRYSELRSLYNHLKHEGQVRSEGAPEFPGKRVVTEESFLGDRSDANSEFVRHRKEQLGSFLRQLFNKNP-ELWEHPDVVEFFNLEALDQGKSYAERAHAGGGVGNGVGHGL 213
BLAST of mRNA_P-lacustris_contig971.16041.1 vs. uniprot
Match: D7FWZ3_ECTSI (UBA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWZ3_ECTSI) HSP 1 Score: 137 bits (346), Expect = 1.710e-33 Identity = 93/145 (64.14%), Postives = 100/145 (68.97%), Query Frame = 2
Query: 1007 SVPNAGARSPVERQVQALRDMGFAEDAARLALRASGYDTNLAAEYCVTGILPARAASVAAISPTAPSPTPASSSRGRKGVIGNNVVPAGHGSGGTTPTWRRAQTGGHTSAGAGFPTVRPGRATGNGCNSGTRFRRQWGGG-VNGA 1438
+VP A SPVE QVQAL+DMGFAEDAARLALRASGYDTNLAAEYCVTGI P RAASVAA+SP A +P P SSSRGRKG+IGNNVVP+G S G P WRRA GG T GA NG G WGG V+GA
Sbjct: 114 AVPKAVPGSPVEIQVQALQDMGFAEDAARLALRASGYDTNLAAEYCVTGIPPDRAASVAALSPAA-APAP-SSSRGRKGLIGNNVVPSGGNSVGV-PAWRRASAGGGTQTGA----------VSNGGGYGGAMTAAWGGAAVDGA 245 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig971.16041.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig971.16041.1 >prot_P-lacustris_contig971.16041.1 ID=prot_P-lacustris_contig971.16041.1|Name=mRNA_P-lacustris_contig971.16041.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=427bp MAEQGTRYASSAYLSVTDDANRWRAGPPQPQQLLLESKISMLMNTGQGLAback to top mRNA from alignment at P-lacustris_contig971:4610..18618- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig971.16041.1 ID=mRNA_P-lacustris_contig971.16041.1|Name=mRNA_P-lacustris_contig971.16041.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=14009bp|location=Sequence derived from alignment at P-lacustris_contig971:4610..18618- (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig971:4610..18618- >mRNA_P-lacustris_contig971.16041.1 ID=mRNA_P-lacustris_contig971.16041.1|Name=mRNA_P-lacustris_contig971.16041.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=2562bp|location=Sequence derived from alignment at P-lacustris_contig971:4610..18618- (Pleurocladia lacustris SAG_25_93)back to top |