mRNA_P-lacustris_contig970.16039.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig970.16039.1
Unique NamemRNA_P-lacustris_contig970.16039.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
[Close]
BLAST of mRNA_P-lacustris_contig970.16039.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 2.550e-6
Identity = 24/34 (70.59%), Postives = 28/34 (82.35%), Query Frame = -2 
Query:  111 TIWIPVAGISHTGENLGRGPLRIPKAPVFDGTDV 212
            T  IP AGI+  GENLGR PL++PKAPVFDG+DV
Sbjct:   80 TTLIPGAGITEPGENLGRSPLKVPKAPVFDGSDV 113
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig970.16039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K2M6_9PHAE2.550e-670.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig970contigP-lacustris_contig970:71225..71587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size363
Cds size363
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817401.2281046-CDS-P-lacustris_contig970:71224..715871622817401.2281046-CDS-P-lacustris_contig970:71224..71587Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig970 71225..71587 +
1693495039.3137982-CDS-P-lacustris_contig970:71224..715871693495039.3137982-CDS-P-lacustris_contig970:71224..71587Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig970 71225..71587 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig970.16039.1prot_P-lacustris_contig970.16039.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig970 71225..71587 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig970.16039.1

>prot_P-lacustris_contig970.16039.1 ID=prot_P-lacustris_contig970.16039.1|Name=mRNA_P-lacustris_contig970.16039.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=121bp
MSAKKRDINISLRNKNFIQIVVPGIQHNILRPQGISKTSVPSNTGALGIL
KGPRPKFSPVCEMPATGIQIVSTTRHFPITYFLYNSIIIVDVMVLVGSSD
TDGLQPSTHVVLRLFLLSVP*
back to top

mRNA from alignment at P-lacustris_contig970:71225..71587+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig970.16039.1 ID=mRNA_P-lacustris_contig970.16039.1|Name=mRNA_P-lacustris_contig970.16039.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=363bp|location=Sequence derived from alignment at P-lacustris_contig970:71225..71587+ (Pleurocladia lacustris SAG_25_93)
ATGTCTGCAAAAAAAAGGGATATCAATATCAGTCTCAGAAACAAAAACTT
CATACAGATTGTTGTACCGGGCATACAGCACAACATTTTGCGACCACAAG
GGATAAGCAAAACGTCCGTCCCGTCAAACACAGGTGCTTTGGGAATTCTC
AAAGGACCCCGACCCAAGTTCTCCCCTGTGTGTGAAATGCCCGCCACAGG
AATCCAAATTGTTTCCACTACGCGACATTTTCCCATCACCTACTTTCTGT
ATAATAGTATTATTATAGTAGATGTTATGGTACTGGTGGGTTCCAGTGAC
ACAGATGGGCTCCAGCCCAGCACACACGTGGTTCTAAGACTCTTTCTCTT
GTCAGTTCCGTAG
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig970:71225..71587+

>mRNA_P-lacustris_contig970.16039.1 ID=mRNA_P-lacustris_contig970.16039.1|Name=mRNA_P-lacustris_contig970.16039.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=726bp|location=Sequence derived from alignment at P-lacustris_contig970:71225..71587+ (Pleurocladia lacustris SAG_25_93)
ATGTCTGCAAAAAAAAGGGATATCAATATCAGTCTCAGAAACAAAAACTT
CATACAGATTGTTGTACCGGGCATACAGCACAACATTTTGCGACCACAAG
GGATAAGCAAAACGTCCGTCCCGTCAAACACAGGTGCTTTGGGAATTCTC
AAAGGACCCCGACCCAAGTTCTCCCCTGTGTGTGAAATGCCCGCCACAGG
AATCCAAATTGTTTCCACTACGCGACATTTTCCCATCACCTACTTTCTGT
ATAATAGTATTATTATAGTAGATGTTATGGTACTGGTGGGTTCCAGTGAC
ACAGATGGGCTCCAGCCCAGCACACACGTGGTTCTAAGACTCTTTCTCTT
GTCAGTTCCGTAGATGTCTGCAAAAAAAAGGGATATCAATATCAGTCTCA
GAAACAAAAACTTCATACAGATTGTTGTACCGGGCATACAGCACAACATT
TTGCGACCACAAGGGATAAGCAAAACGTCCGTCCCGTCAAACACAGGTGC
TTTGGGAATTCTCAAAGGACCCCGACCCAAGTTCTCCCCTGTGTGTGAAA
TGCCCGCCACAGGAATCCAAATTGTTTCCACTACGCGACATTTTCCCATC
ACCTACTTTCTGTATAATAGTATTATTATAGTAGATGTTATGGTACTGGT
GGGTTCCAGTGACACAGATGGGCTCCAGCCCAGCACACACGTGGTTCTAA
GACTCTTTCTCTTGTCAGTTCCGTAG
back to top