mRNA_P-lacustris_contig97.16017.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig97.16017.1
Unique NamemRNA_P-lacustris_contig97.16017.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig97.16017.1 vs. uniprot
Match: D7FYX2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYX2_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 1.700e-17
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 3 
Query:  498 EPDVRSDIVALMREASMSKDRVKLEKAIKKAEDAGLHFEAKQGRRQLGRITG 653
            EPDVRS+IVA+MREASMSKD+ KLE AIKKAEDAGLHFEA QGRRQLGRI G
Sbjct:  169 EPDVRSEIVAMMREASMSKDKDKLEGAIKKAEDAGLHFEASQGRRQLGRIVG 220
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig97.16017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYX2_ECTSI1.700e-1786.54Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig97contigP-lacustris_contig97:74187..76396 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_002800.1
Exons4
Model size864
Cds size456
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig97.16017.1prot_P-lacustris_contig97.16017.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig97 74916..76396 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817398.182632-UTR-P-lacustris_contig97:74186..745591622817398.182632-UTR-P-lacustris_contig97:74186..74559Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig97 74187..74559 -
1693495036.8885899-UTR-P-lacustris_contig97:74186..745591693495036.8885899-UTR-P-lacustris_contig97:74186..74559Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig97 74187..74559 -
1622817398.1935296-UTR-P-lacustris_contig97:74880..749151622817398.1935296-UTR-P-lacustris_contig97:74880..74915Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig97 74881..74915 -
1693495036.8990407-UTR-P-lacustris_contig97:74880..749151693495036.8990407-UTR-P-lacustris_contig97:74880..74915Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig97 74881..74915 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817398.2052634-CDS-P-lacustris_contig97:74915..751691622817398.2052634-CDS-P-lacustris_contig97:74915..75169Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig97 74916..75169 -
1693495036.908479-CDS-P-lacustris_contig97:74915..751691693495036.908479-CDS-P-lacustris_contig97:74915..75169Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig97 74916..75169 -
1622817398.217279-CDS-P-lacustris_contig97:75207..753131622817398.217279-CDS-P-lacustris_contig97:75207..75313Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig97 75208..75313 -
1693495036.9200416-CDS-P-lacustris_contig97:75207..753131693495036.9200416-CDS-P-lacustris_contig97:75207..75313Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig97 75208..75313 -
1622817398.231443-CDS-P-lacustris_contig97:76300..763961622817398.231443-CDS-P-lacustris_contig97:76300..76396Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig97 76301..76396 -
1693495036.9294205-CDS-P-lacustris_contig97:76300..763961693495036.9294205-CDS-P-lacustris_contig97:76300..76396Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig97 76301..76396 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig97.16017.1

>prot_P-lacustris_contig97.16017.1 ID=prot_P-lacustris_contig97.16017.1|Name=mRNA_P-lacustris_contig97.16017.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=152bp
MAAEEEVGKYKRLYEEQKAKVKDLERQNLQLKDTIQQLMAVGRQQGATAS
NSNILNSNNANDNHSNKIGNNSRTARARPAPLPIATPRPRRRPGALAEEE
GGVTGWRALVLLQINAVGANLTLVGVASREGVVRSLLPVRRRPRPRPRRQ
A*
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mRNA from alignment at P-lacustris_contig97:74187..76396-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig97.16017.1 ID=mRNA_P-lacustris_contig97.16017.1|Name=mRNA_P-lacustris_contig97.16017.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=2210bp|location=Sequence derived from alignment at P-lacustris_contig97:74187..76396- (Pleurocladia lacustris SAG_25_93)
ATGGCGGCGGAAGAGGAGGTGGGCAAGTACAAGCGCCTGTATGAGGAGCA
GAAGGCGAAAGTGAAGGATTTGGAGCGCCAGAATCTCCAGCTGAAGGTGT
GTGCGGAGAAGAGAAAGACCCACAAAAAAGGAGGAGATTCTTTCAGACTC
GTCGCTCTCACTCACAGACACAGAAGGCTCTCTTTCCGTCCTGTCTCGTC
TCCTCGGGAGCCTGGGGTTCATGCAGACATCCTTTCCTTTTGTCCCGCTG
TCGTCTCTAGATGCGTTCGCCGCTGCATCTTGCTTCTGCTCTAGAGGAAC
CTTTTCTGCTGCATCGACGTAAAGGATCTATCTACTACACATGAGGTTGT
CCCACCGCATGTGACACTTACTTTTAAACCCCACTTTAAACCCCACCGCC
CCAGGCCATCCGTTGTATTCCCGGGTGATACTTACGCGACAACAGCAGCC
ACGCAATGCGCGAAGGGTAAAGGATAGCTGATGGCCGCCAAAAAAATTCA
AATCAAAGAAGATGATCAGTTCGAGGAGTTGCTCAACGTTTTTACCGCTG
GTATCGTTCGAGGGACCATGGGTATCGTTCGAAGCACACGTCCTCTCGAC
TTGCATGTGGCCCTGTCGTGAGGATAATGACGCTCGCTCTCCCACACTGA
ACCTCGAAAGCGGACGGGCATCTCGGGAGTACAACATGCATGCAGCATTA
GCCAAACCACACGAAGTTCTCAGTTATAGCATCAACCGCCAGCTCCGCCT
TCCGATTGAAATTGGACCAAACGACCACCAAGGCTCCGAGCATTTGCTGT
CTCTGAGAGGGTAGAGTGTTACAGCAGCAACCGCGCAACCGCAAACGCAC
ACTGTCGTCCATGCATATCGACGTTGGCAGAAGTGCCCATCCCGGAGGTT
CCACTTCTGATAGCTCTGTCGGCGTCACAACAAGGGTGCCTCTGTGCACT
GTGCACTGTTCGAGTCGCCCCCCACTTGCGCCCGACCCTGGTTACCGTTG
GCCTTTTCTCGCTGCATACATACCCCCCGCCCTATTGTTTTTCCTCACAT
ACGAAATCAATCTCAAACCGCGACAAATCACAGGATACCATTCAGCAGCT
CATGGCGGTGGGCCGGCAACAGGGGGCAACTGCTAGCAACAGCAACATCC
TCAACAGCAACAACGCCAACGACAACCACAGCAACAAGAGTAACAACAAG
GCCCCTCCCCCGTGGCCGGGACAGGAGTAGGCAACAACTCGCGCACCGCC
CGCGCGAGGCCCGCCCCGCTTCCAATCGCAACCCCCCGGCCCCGCCGCAG
GCCGGGGGCGCTGGCCGAGGAGGAGGGCGGGGTAACGGGGTGGCGAGCGC
TAGTACTGCTTCAAATCAACGCGGTGGGGGCCAATCTAACTCTGGTGGGG
GTGGCGAGCCGGGAGGGGGTGGTCAGGAGCCTGCTCCCGGTACGGCGGCG
GCCGCGGCCGCGGCCGCGGCGGCAGGCTTAGTGGCGGCGCGAGCGGCTCA
GAAGGCGGCGGAGCCGGTAAGCCGCTTGTTGAACCTCCCCGAGAGAGAGA
CAGCAGGAGATGCTTTGAGCTCCAGAGGAGCGCTTGCGTTCTGATGAGGG
TAATTGTAAACATTAACTTTCCGTCGTTCTTACTCGTCTTCGAGTTGCAG
GATGAACGACGCCCTATTTTTTTATTCCCCCGTCATGCTTCCGAACCCCC
GCCCCCTGTCGACGTTCCCAGTACCCCTTCGCCCACGCTCGCTCCTTTTT
TTCATGACGCTCACCCAATTGTCCATGGTAAACATCCGCTCGCTCCGTCC
TGTATTCCCTCCCTCTCTCCCCGTCTCTGCCCCTCAGCCCCCGGAGCCCG
ACGTCCGAAGCGACATCGTTGCGCTGATGCGCGAGGCAAGCATGAGCAAA
GACAGAGTGAAGCTGGAGAAAGCCATTAAAAAGGCAGAGGACGCCGGCCT
ACACTTCGAGGCGAAGCAGGGGCGGCGACAGCTTGGCCGGATAACTGGAT
GATGATGATGATGACAATCATCATTTCTGGATATAGGATGCACCCAACTC
TCCCGCAGGGAAGATAAGCCGGCTCTGATTGGCTGCTCGTCTAACTACTG
CAGCGGTGGGGGGCGAGTTTCTGCCAGTCTGAAAGTCGGCGGGTGTTGCG
TCAAGTGGGGTCGCATGCGGTGCCACTCCGGCGCCGTGGGATGCCCCTTT
GTAGTCTGAG
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Coding sequence (CDS) from alignment at P-lacustris_contig97:74187..76396-

>mRNA_P-lacustris_contig97.16017.1 ID=mRNA_P-lacustris_contig97.16017.1|Name=mRNA_P-lacustris_contig97.16017.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=912bp|location=Sequence derived from alignment at P-lacustris_contig97:74187..76396- (Pleurocladia lacustris SAG_25_93)
ATGGCGGCGGAAGAGGAGGTGGGCAAGTACAAGCGCCTGTATGAGGAGCA
GAAGGCGAAAGTGAAGGATTTGGAGCGCCAGAATCTCCAGCTGAAGATGG
CGGCGGAAGAGGAGGTGGGCAAGTACAAGCGCCTGTATGAGGAGCAGAAG
GCGAAAGTGAAGGATTTGGAGCGCCAGAATCTCCAGCTGAAGGATACCAT
TCAGCAGCTCATGGCGGTGGGCCGGCAACAGGGGGCAACTGCTAGCAACA
GCAACATCCTCAACAGCAACAACGCCAACGACAACCACAGCAACAAGAGA
TACCATTCAGCAGCTCATGGCGGTGGGCCGGCAACAGGGGGCAACTGCTA
GCAACAGCAACATCCTCAACAGCAACAACGCCAACGACAACCACAGCAAC
AAGATAGGCAACAACTCGCGCACCGCCCGCGCGAGGCCCGCCCCGCTTCC
AATCGCAACCCCCCGGCCCCGCCGCAGGCCGGGGGCGCTGGCCGAGGAGG
AGGGCGGGGTAACGGGGTGGCGAGCGCTAGTACTGCTTCAAATCAACGCG
GTGGGGGCCAATCTAACTCTGGTGGGGGTGGCGAGCCGGGAGGGGGTGGT
CAGGAGCCTGCTCCCGGTACGGCGGCGGCCGCGGCCGCGGCCGCGGCGGC
AGGCTTAGTAGGCAACAACTCGCGCACCGCCCGCGCGAGGCCCGCCCCGC
TTCCAATCGCAACCCCCCGGCCCCGCCGCAGGCCGGGGGCGCTGGCCGAG
GAGGAGGGCGGGGTAACGGGGTGGCGAGCGCTAGTACTGCTTCAAATCAA
CGCGGTGGGGGCCAATCTAACTCTGGTGGGGGTGGCGAGCCGGGAGGGGG
TGGTCAGGAGCCTGCTCCCGGTACGGCGGCGGCCGCGGCCGCGGCCGCGG
CGGCAGGCTTAG
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