mRNA_P-lacustris_contig968.16008.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig968.16008.1
Unique NamemRNA_P-lacustris_contig968.16008.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig968.16008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig968contigP-lacustris_contig968:71976..75002 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size160
Cds size150
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig968.16008.1prot_P-lacustris_contig968.16008.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig968 71986..75002 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817396.6245596-UTR-P-lacustris_contig968:71975..719851622817396.6245596-UTR-P-lacustris_contig968:71975..71985Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig968 71976..71985 +
1693495035.6270945-UTR-P-lacustris_contig968:71975..719851693495035.6270945-UTR-P-lacustris_contig968:71975..71985Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig968 71976..71985 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817396.63694-CDS-P-lacustris_contig968:71985..720621622817396.63694-CDS-P-lacustris_contig968:71985..72062Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig968 71986..72062 +
1693495035.6374743-CDS-P-lacustris_contig968:71985..720621693495035.6374743-CDS-P-lacustris_contig968:71985..72062Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig968 71986..72062 +
1622817396.6504269-CDS-P-lacustris_contig968:74929..750021622817396.6504269-CDS-P-lacustris_contig968:74929..75002Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig968 74930..75002 +
1693495035.651148-CDS-P-lacustris_contig968:74929..750021693495035.651148-CDS-P-lacustris_contig968:74929..75002Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig968 74930..75002 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig968.16008.1

>prot_P-lacustris_contig968.16008.1 ID=prot_P-lacustris_contig968.16008.1|Name=mRNA_P-lacustris_contig968.16008.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=50bp
MAGLHRGGACAGVLCAWWKRVHRINRWLTVGEATAMSLWIFTVISEMAQG
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mRNA from alignment at P-lacustris_contig968:71976..75002+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig968.16008.1 ID=mRNA_P-lacustris_contig968.16008.1|Name=mRNA_P-lacustris_contig968.16008.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=3027bp|location=Sequence derived from alignment at P-lacustris_contig968:71976..75002+ (Pleurocladia lacustris SAG_25_93)
GGGTGCCGGCATGGCTGGATTGCATCGCGGCGGCGCTTGTGCTGGGGTAC
TCTGTGCATGGTGGAAACGGGTTCACCGGATCAATAGGTGGGAAATCCTG
TGTGTGCGTAGTTCTACAACTACGCAGGTGCCGTCCGCTCCACTAGACAT
GTTCCTTGCTGTTGTTATTGTTGTTGTTGTTGTTGTTGGGTCTCCAGGCG
GGAAAATTGATCATCTTTTTTCACGTCTATTATCATTCTGGCAGCACTTC
AGACAGCAGCTGCGTGCTCCAGCTTCTTGTTCCCAATGCCTACCACGGTG
TTTTTGTACAGACAGCACTCCAGACAACAATACGCTGTAGTCGGCAAACA
TTACGTTCGGTAAAAGAGTGGGACAGGGGGGGGGATGCTGCTGTAGTCGA
ATGAGGTTTACGGAGGTGTAGTAGTTCAGCCGTGCGCACGCATGTTACGC
TGCAGGGATTCTAGGTGTACCTCGTCGGGCTTGTGTACCCTTTTCTTCCT
TAGAGTGCGTGCTCTTTAGATCCTCTGATGGCTCTAGCATTTTTGTGACC
ACGGGCCGAGAGTCTTTTGCTAGATAATGATGTTGGGATTAGCAACTGAC
ATACGAGTTTAATGTGAAGACAACAACAACAACAACAACAACAACAACAA
CAAAAACAAAAACAGTTATACGTTCGTAAATTTAGAGGGGATGACACCGA
CCCGAACCCCAGCATCAATGAGAGTTGTACAGCACTCGAGAGAACGTCCA
GGCGCGTAGGTGACTACGAATAACATCCAAAGCTCGCACATCGAGTGGGA
CAGTAGCTCAGTTGTACATGCGCTTCTTCACCTGTCAACTCGCTCGCTCG
GCCCTCGGACGCTCTTCTTACTCGAAATCCACTTCGCCATAAGGACCGGT
CTTAACGGGAGATCGAATCCACAAATTGAATTCACATTTACAATTCAGTC
CTGGAAGGAATCAACTTCAATTTTCATTGGGCGAGAAGTTTGGAGACCGT
TGAATCTTCACGGACTTAACTGTACTCTCGGTTTTTGGATCTGGGGATTC
AAAGAAATGCTTTGGGCATTTCTTTGGATTGACACTTGGGTAAAACGGAA
CCACACTTGCGGGACCACGGTCAACTCACTTCGTAGCGTCCACATGGCAC
AGGACTGTCACCGCGGCGGTCTACTCGGGCAGTTGCGCCGCACACACTCA
TAGTGTAAATGTATTTTTCGGTATTTTGTCGTCAAGACACTTCGGCGTTT
GAAATCACATTTCTGCTTTTCCGGCGCTTTATTTCTCAGGCCCATTCTTA
TCGAACCACTTTTTTCTACGAATTCGTAGATTGGTTCTTTGAGATTTTTG
TACCACTTAATCCAAGAGAAAGATCGAAACACCATGCGGAACCATTCGAT
GTAGTCTAATACTAACGATTCTGATTGTACCCAATATGTGCATGTATGTG
TAGGTATATAGAGTGGTAGAACAGCAGTGAGCGTACAGCAGTAGTGTTGA
GCTAGTTAAGAATGCGTCATTATTGGCTTGCGTTTGTTTCAAATTGTATG
GCTAAAATGGTATGGCTAAATTGTATGGCTTGAAGTTCACCACCGGCGAT
CCGTGTAGTTGAGGATGGCATGGTTCCATTGCAGCGAAGCGCGTAAATTT
TATCATGTGTCCGGAGAAAAATGACAGAATGAATGAAGGTATAAAGATTG
CACGAAGGAAATCTGGGGTCGTTTGGGTAGCAGGACTGCTTCAATTGTTG
AAAGCGTAATTGGACCGCCTGCCTACATGGGTATTTTGGATGGCAGAAAT
GTGTGAAGGAAACATGTAATCCCAGATTCATAAACATAACATGTATAATA
CGTACTCCCGTAAGTCAGTTGGTGAACCGTGTACCTTATGACGGCTATGT
CGTGGGTTCGATGCTCCTCGTCTCTTTTGCAGTCTGTGTGTGTTGTCATC
AGTGGAAACGATTAGACTATTTGTCTAATTCGTGAGTAAATAAAATTCGT
TTTTTTTCGACGAGGGAAATGGACAGCTGAAACCTTCGCGCGATAAAGTT
TAAGGCATGTATGTGCCGCAGGTGGGCGGGTGGGGGTCTTCAGGGAGAGA
AAACCCTCTCTGTGACCCCGTGGGTGCCACCGTCCACTTCGCCGAAAGGC
GCAAAGAAGGCTAGCGTCCAGAACAGATAGATGGGCCGAAAAATAAATAC
GTCGAAGTAAATGGATAGCCTGACTTCAAAGGAGGACTAAGTTTAAGGCA
TCACACCCGATAAATTCCCACCGTTTCCATACCATCGCGAAAAGCATTTG
CCACCTATTTTTGCAGTACGGTGGTAACCCCAAAAAATTCCCGCCTGCGG
CACGCTTTTGCGTTGCAAATACTCGCGCTTCGCGCGTTACCGCGCGTATC
GCTGGTCTCACCTCTGTTTCGTGTTTGTGTTTGTCGCTTTTGTGTTGACT
TTCTGGGTCAGCCCTCATGATGTTCTATTGTTTTATGGTTAATCCATGCA
CCTTTGATGGGTATTCAGCTTGTGGCCACGGAGACCGTCCGCGTCAGTAC
ATACGATAGAAGGTACTGCGCCGAGGACGGAACGGTTTTTACTGTGACGT
ACAACAAAAACAAGGCAGACAGAGGTAAGAACAAAACAGAATATAATTTG
AAATTTTGAGAACACACACACGAAGATAGACGCAGGTTCATGTGCACACG
AGATCCGTTAGAGGATTGGATGCTAGCAAAACATCCTCCTCAGGAAGACC
CCTGTTGCGTGTGTGTGCGACCCCCCGTTTCGCGTACTATCTATTCCGGA
CAGATTGAAGATAGGGTCAGATATGGTGTGCCTTTGCTTGCATAAATTGG
CATAGATGTGCGGTGCATTTGCACCAAATTGATCAAGGTATTGAACGGCC
AGGTGATCTTCACCACGTAGCTGACCCAGACGATCCACGTCGTGTAATTT
TTAGGTGGCTCACTGTGGGGGAGGCCACTGCGATGTCCCTGTGGATCTTC
ACCGTGATATCCGAAATGGCCCAAGGT
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Coding sequence (CDS) from alignment at P-lacustris_contig968:71976..75002+

>mRNA_P-lacustris_contig968.16008.1 ID=mRNA_P-lacustris_contig968.16008.1|Name=mRNA_P-lacustris_contig968.16008.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=300bp|location=Sequence derived from alignment at P-lacustris_contig968:71976..75002+ (Pleurocladia lacustris SAG_25_93)
ATGGCTGGATTGCATCGCGGCGGCGCTTGTGCTGGGGTACTCTGTGCATG
GTGGAAACGGGTTCACCGGATCAATAGATGGCTGGATTGCATCGCGGCGG
CGCTTGTGCTGGGGTACTCTGTGCATGGTGGAAACGGGTTCACCGGATCA
ATAGGTGGCTCACTGTGGGGGAGGCCACTGCGATGTCCCTGTGGATCTTC
ACCGTGATATCCGAAATGGCCCAAGGTGTGGCTCACTGTGGGGGAGGCCA
CTGCGATGTCCCTGTGGATCTTCACCGTGATATCCGAAATGGCCCAAGGT
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