mRNA_P-lacustris_contig968.16005.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig968.16005.1
Unique NamemRNA_P-lacustris_contig968.16005.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig968.16005.1 vs. uniprot
Match: A0A6H5KPD8_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPD8_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 5.220e-8
Identity = 26/31 (83.87%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:  277 HGRALEDALNACWSKLVEPGAWLSYDEQMVK 369
            H R LED LN CWS+LVEPGAWLSYDEQMVK
Sbjct:  105 HIRKLEDVLNKCWSELVEPGAWLSYDEQMVK 135
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BLAST of mRNA_P-lacustris_contig968.16005.1 vs. uniprot
Match: A0A6H5KG44_9PHAE (DDE_Tnp_1_7 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG44_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 5.390e-8
Identity = 26/29 (89.66%), Postives = 26/29 (89.66%), Query Frame = 1 
Query:  283 RALEDALNACWSKLVEPGAWLSYDEQMVK 369
            R LED LN CWSKLVEPGAWLSYDEQMVK
Sbjct:    3 RELEDLLNECWSKLVEPGAWLSYDEQMVK 31
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BLAST of mRNA_P-lacustris_contig968.16005.1 vs. uniprot
Match: A0A6H5JT54_9PHAE (DDE_Tnp_1_7 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT54_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 7.690e-8
Identity = 26/31 (83.87%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:  277 HGRALEDALNACWSKLVEPGAWLSYDEQMVK 369
            H R LED LN CWSKLVEPGAWLS+DEQMVK
Sbjct:   86 HIRELEDVLNECWSKLVEPGAWLSHDEQMVK 116
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BLAST of mRNA_P-lacustris_contig968.16005.1 vs. uniprot
Match: A0A6H5K073_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K073_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.510e-7
Identity = 25/31 (80.65%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:  277 HGRALEDALNACWSKLVEPGAWLSYDEQMVK 369
            H R LED LN CWS+LV+PGAWLSYDEQMVK
Sbjct:  257 HIRELEDVLNKCWSELVDPGAWLSYDEQMVK 287
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BLAST of mRNA_P-lacustris_contig968.16005.1 vs. uniprot
Match: A0A6H5KQZ5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ5_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 2.200e-7
Identity = 25/31 (80.65%), Postives = 26/31 (83.87%), Query Frame = 1 
Query:  277 HGRALEDALNACWSKLVEPGAWLSYDEQMVK 369
            H R LED  N CWS+LVEPGAWLSYDEQMVK
Sbjct:   39 HIRKLEDVFNKCWSELVEPGAWLSYDEQMVK 69
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BLAST of mRNA_P-lacustris_contig968.16005.1 vs. uniprot
Match: A0A6H5KNP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNP3_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 2.610e-7
Identity = 25/31 (80.65%), Postives = 26/31 (83.87%), Query Frame = 1 
Query:  277 HGRALEDALNACWSKLVEPGAWLSYDEQMVK 369
            H RALEDALN CWS LVE G W+SYDEQMVK
Sbjct:  131 HIRALEDALNTCWSSLVELGGWVSYDEQMVK 161
[Close]
BLAST of mRNA_P-lacustris_contig968.16005.1 vs. uniprot
Match: A0A6H5K5P5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5P5_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 2.670e-6
Identity = 24/31 (77.42%), Postives = 25/31 (80.65%), Query Frame = 1 
Query:  277 HGRALEDALNACWSKLVEPGAWLSYDEQMVK 369
            H RA EDALN CWS LVE G W+SYDEQMVK
Sbjct:  342 HIRAFEDALNTCWSSLVELGGWVSYDEQMVK 372
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BLAST of mRNA_P-lacustris_contig968.16005.1 vs. uniprot
Match: A0A6H5JHH7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHH7_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 9.240e-6
Identity = 39/99 (39.39%), Postives = 47/99 (47.47%), Query Frame = 1 
Query:   76 NGTSAFCPGVDVNDRGCHHHT*RLHSTLLTT*FS-VRAHPPN*HLHETIPRILPSALLFHFMARTTVAHGRALEDALNACWSKLVEPGAWLSYDEQMVK 369
            NG   FC   D +D    H   R  +  +T  F   R       L  T     PS+      A T + H   LED LN CWS+LV+PGA LS+DEQMVK
Sbjct:  147 NGYVNFC--ADESDPPLEHQEPRHRAKKVTRDFRRCRTRTWRMDLEST-----PSS------ASTCMPHNGELEDVLNKCWSELVDPGACLSHDEQMVK 232
[Close]
BLAST of mRNA_P-lacustris_contig968.16005.1 vs. uniprot
Match: A0A6H5JDZ7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDZ7_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 9.350e-6
Identity = 23/31 (74.19%), Postives = 26/31 (83.87%), Query Frame = 1 
Query:  277 HGRALEDALNACWSKLVEPGAWLSYDEQMVK 369
            H + LED LN CWS+LV+PGA LSYDEQMVK
Sbjct:   97 HDKELEDVLNKCWSELVDPGACLSYDEQMVK 127
[Close]
BLAST of mRNA_P-lacustris_contig968.16005.1 vs. uniprot
Match: A0A6H5K972_9PHAE (DDE_Tnp_1_7 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K972_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 3.000e-5
Identity = 23/31 (74.19%), Postives = 24/31 (77.42%), Query Frame = 1 
Query:  277 HGRALEDALNACWSKLVEPGAWLSYDEQMVK 369
            H RA EDALN CWS LVE   W+SYDEQMVK
Sbjct:  166 HIRAFEDALNTCWSSLVELEGWVSYDEQMVK 196
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig968.16005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5KPD8_9PHAE5.220e-883.87DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KG44_9PHAE5.390e-889.66DDE_Tnp_1_7 domain-containing protein n=2 Tax=Ecto... [more]
A0A6H5JT54_9PHAE7.690e-883.87DDE_Tnp_1_7 domain-containing protein (Fragment) n... [more]
A0A6H5K073_9PHAE1.510e-780.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQZ5_9PHAE2.200e-780.65DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KNP3_9PHAE2.610e-780.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5P5_9PHAE2.670e-677.42DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JHH7_9PHAE9.240e-639.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDZ7_9PHAE9.350e-674.19DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5K972_9PHAE3.000e-574.19DDE_Tnp_1_7 domain-containing protein (Fragment) n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig968contigP-lacustris_contig968:50455..51156 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size370
Cds size228
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig968.16005.1prot_P-lacustris_contig968.16005.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig968 50531..51090 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817396.5572977-UTR-P-lacustris_contig968:50454..505301622817396.5572977-UTR-P-lacustris_contig968:50454..50530Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig968 50455..50530 +
1693495035.5902848-UTR-P-lacustris_contig968:50454..505301693495035.5902848-UTR-P-lacustris_contig968:50454..50530Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig968 50455..50530 +
1622817396.5931-UTR-P-lacustris_contig968:51090..511561622817396.5931-UTR-P-lacustris_contig968:51090..51156Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig968 51091..51156 +
1693495035.6184068-UTR-P-lacustris_contig968:51090..511561693495035.6184068-UTR-P-lacustris_contig968:51090..51156Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig968 51091..51156 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817396.5686543-CDS-P-lacustris_contig968:50530..505421622817396.5686543-CDS-P-lacustris_contig968:50530..50542Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig968 50531..50542 +
1693495035.6022062-CDS-P-lacustris_contig968:50530..505421693495035.6022062-CDS-P-lacustris_contig968:50530..50542Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig968 50531..50542 +
1622817396.5810742-CDS-P-lacustris_contig968:50874..510901622817396.5810742-CDS-P-lacustris_contig968:50874..51090Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig968 50875..51090 +
1693495035.6101286-CDS-P-lacustris_contig968:50874..510901693495035.6101286-CDS-P-lacustris_contig968:50874..51090Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig968 50875..51090 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig968.16005.1

>prot_P-lacustris_contig968.16005.1 ID=prot_P-lacustris_contig968.16005.1|Name=mRNA_P-lacustris_contig968.16005.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=76bp
MAHQPFARALTLMIEVATTIPDACIPPYLPPDFRCVRIPPTNIFMKLSPE
FFPLLSSSTSWLVQPSHMEGRWRML*
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mRNA from alignment at P-lacustris_contig968:50455..51156+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig968.16005.1 ID=mRNA_P-lacustris_contig968.16005.1|Name=mRNA_P-lacustris_contig968.16005.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=702bp|location=Sequence derived from alignment at P-lacustris_contig968:50455..51156+ (Pleurocladia lacustris SAG_25_93)
TGTTCTACTCGAGCTTCTTTCACATGGCGCCCGCCACCGGCCAGGTCAAG
AAGGATGACCCAGACTATGACTCGAAATGGCACATCAGGTACATGCTGTA
GGTTTGGACGTCACATTGCTCTCCACCCGTCTCTACCGCCGATACCAGTT
GCCCTCTCCGCCCGTCTCTACCGTCGGCACCCATCGACCCGAAATTCTCT
GGGATGAAGTCTTCTAGATAGATAAGATCACGTGCCAGGGCGGAGAAAAA
AAAGGCACAAATTTTCTGCTCACTACAACCATGTCGACGCATTATTTTGC
AGAACTCCGAGGGCACACGAAATCTTTGTCTGGCTCAGTTGAAGATTTCG
AAATTCTCACCGAACACCCTCTCGCTGACCCGGACCGCGTCACCTGAACC
TTCTGGCATACGAACAACAGCCTTTTGCCCGGGCGTTGACGTTAATGATC
GAGGTTGCCACCACCATACCTGACGCCTGCATTCCACCCTACTTACCACC
TGATTTTCGGTGCGTGCGCATCCCCCCAACTAACATCTTCATGAAACTAT
CCCCCGAATTCTTCCCTCTGCTCTCCTCTTCCACTTCATGGCTCGTACAA
CCGTCGCACATGGAAGGGCGCTGGAGGATGCTTTGAATGCTTGCTGGAGC
AAGCTTGTTGAACCGGGCGCATGGTTGTCGTATGACGAGCAGATGGTCAA
GA
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Coding sequence (CDS) from alignment at P-lacustris_contig968:50455..51156+

>mRNA_P-lacustris_contig968.16005.1 ID=mRNA_P-lacustris_contig968.16005.1|Name=mRNA_P-lacustris_contig968.16005.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=456bp|location=Sequence derived from alignment at P-lacustris_contig968:50455..51156+ (Pleurocladia lacustris SAG_25_93)
ATGGCACATCAGATGGCACATCAGCCTTTTGCCCGGGCGTTGACGTTAAT
GATCGAGGTTGCCACCACCATACCTGACGCCTGCATTCCACCCTACTTAC
CACCTGATTTTCGGTGCGTGCGCATCCCCCCAACTAACATCTTCATGAAA
CTATCCCCCGAATTCTTCCCTCTGCTCTCCTCTTCCACTTCATGGCTCGT
ACAACCGTCGCACATGGAAGGGCGCTGGAGGATGCTTTGACCTTTTGCCC
GGGCGTTGACGTTAATGATCGAGGTTGCCACCACCATACCTGACGCCTGC
ATTCCACCCTACTTACCACCTGATTTTCGGTGCGTGCGCATCCCCCCAAC
TAACATCTTCATGAAACTATCCCCCGAATTCTTCCCTCTGCTCTCCTCTT
CCACTTCATGGCTCGTACAACCGTCGCACATGGAAGGGCGCTGGAGGATG
CTTTGA
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