mRNA_P-lacustris_contig966.15993.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig966.15993.1
Unique NamemRNA_P-lacustris_contig966.15993.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig966.15993.1 vs. uniprot
Match: D8LJP2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJP2_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 2.400e-24
Identity = 53/64 (82.81%), Postives = 58/64 (90.62%), Query Frame = 1 
Query:   58 AYFFKDRLGLGNNERLVAMMGTWTEGLVGVSLIAIGLLGLKESLLDNQEAEIAFEDKSAGIAVV 249
            A+FFKDRLGLG+N+RLVAMMG+WTEGLVGVSLIAIGLLGLKESLLD +E   AFE KSAG AVV
Sbjct:   61 AFFFKDRLGLGHNKRLVAMMGSWTEGLVGVSLIAIGLLGLKESLLDYEETP-AFEAKSAGSAVV 123
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BLAST of mRNA_P-lacustris_contig966.15993.1 vs. uniprot
Match: A0A835YVB1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVB1_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 4.200e-8
Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:   58 AYFFKDRL--GLGNNERLVAMMGTWTEGLVGVSLIAIGLLGLKESLLDNQEAEIA 216
            A+F KDR+  G G   R ++ +GT+TE LVGVSLI IGL+GLKESLLD    + A
Sbjct:   56 AFFLKDRIQAGGGGGGRWISKLGTYTEVLVGVSLITIGLIGLKESLLDKPHEDDA 110
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig966.15993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJP2_ECTSI2.400e-2482.81Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YVB1_9STRA4.200e-856.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig966contigP-lacustris_contig966:64684..65305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.9
Seed ortholog evalue2.9e-19
Seed eggNOG ortholog2880.D8LJP2
Preferred nameNIK1
Hectar predicted targeting categoryother localisation
EggNOG OGs28N5Y@1,2QUR7@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size252
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817395.8356442-CDS-P-lacustris_contig966:64683..647401622817395.8356442-CDS-P-lacustris_contig966:64683..64740Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig966 64684..64740 +
1693495034.9559562-CDS-P-lacustris_contig966:64683..647401693495034.9559562-CDS-P-lacustris_contig966:64683..64740Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig966 64684..64740 +
1622817395.8499842-CDS-P-lacustris_contig966:65111..653031622817395.8499842-CDS-P-lacustris_contig966:65111..65303Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig966 65112..65303 +
1693495034.970113-CDS-P-lacustris_contig966:65111..653031693495034.970113-CDS-P-lacustris_contig966:65111..65303Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig966 65112..65303 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig966.15993.1prot_P-lacustris_contig966.15993.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig966 64684..65303 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig966.15993.1

>prot_P-lacustris_contig966.15993.1 ID=prot_P-lacustris_contig966.15993.1|Name=mRNA_P-lacustris_contig966.15993.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=83bp
VVLGRPGQSERRRMITQTQAYFFKDRLGLGNNERLVAMMGTWTEGLVGVS
LIAIGLLGLKESLLDNQEAEIAFEDKSAGIAVV
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mRNA from alignment at P-lacustris_contig966:64684..65305+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig966.15993.1 ID=mRNA_P-lacustris_contig966.15993.1|Name=mRNA_P-lacustris_contig966.15993.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=622bp|location=Sequence derived from alignment at P-lacustris_contig966:64684..65305+ (Pleurocladia lacustris SAG_25_93)
GTTGTCCTAGGTCGGCCTGGCCAATCGGAAAGGAGGCGCATGATCACACA
GACTCAGGCATGAAGACGGGCTCCAGCAAGCATGTCTACAAGCTTTTCCC
ACTCCCCGCCCTTTCAATCTTGGATACCGCCCCTCGGCGGATCTGGGtcc
GTATCAGGAATCCTCCGTCTCGGCTGAGATGTGGACTTGTTCAGAACGTG
CCCCTAGACCGAACATCCTCTCCAGATCAACTTCAATCGCAAAAAAATAT
TCCCCACCCGACCCTATGACGAATGTGAGAGAGACGTGGCGAGACCCCGA
ATTTCGGGGACTTCTTTACTCGGAGTATGACAGAAGCTCGGTCTGGAAAC
GGATGCGCGGTCAACGGTGGAATAACAAATGTAAGCACTAAATCAGTAGC
CCCCCCCTCCTGCTTCACCCAACGGCAGGCGTATTTCTTCAAGGACCGGC
TGGGGCTCGGGAACAACGAGCGGCTCGTCGCGATGATGGGTACCTGGACA
GAAGGGCTCGTCGGCGTCTCCCTCATCGCCATCGGGCTGCTGGGCCTTAA
AGAATCCCTCCTGGATAACCAGGAAGCCGAGATCGCTTTTGAGGACAAGA
GCGCCGGCATCGCGGTCGTTGA
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Coding sequence (CDS) from alignment at P-lacustris_contig966:64684..65305+

>mRNA_P-lacustris_contig966.15993.1 ID=mRNA_P-lacustris_contig966.15993.1|Name=mRNA_P-lacustris_contig966.15993.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=498bp|location=Sequence derived from alignment at P-lacustris_contig966:64684..65305+ (Pleurocladia lacustris SAG_25_93)
GTTGTCCTAGGTCGGCCTGGCCAATCGGAAAGGAGGCGCATGATCACACA
GACTCAGGTTGTCCTAGGTCGGCCTGGCCAATCGGAAAGGAGGCGCATGA
TCACACAGACTCAGGCGTATTTCTTCAAGGACCGGCTGGGGCTCGGGAAC
AACGAGCGGCTCGTCGCGATGATGGGTACCTGGACAGAAGGGCTCGTCGG
CGTCTCCCTCATCGCCATCGGGCTGCTGGGCCTTAAAGAATCCCTCCTGG
ATAACCAGGAAGCCGAGATCGCTTTTGAGGACAAGAGCGCCGGCATCGCG
GTCGTTGCGTATTTCTTCAAGGACCGGCTGGGGCTCGGGAACAACGAGCG
GCTCGTCGCGATGATGGGTACCTGGACAGAAGGGCTCGTCGGCGTCTCCC
TCATCGCCATCGGGCTGCTGGGCCTTAAAGAATCCCTCCTGGATAACCAG
GAAGCCGAGATCGCTTTTGAGGACAAGAGCGCCGGCATCGCGGTCGTT
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