mRNA_P-lacustris_contig965.15987.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig965.15987.1
Unique NamemRNA_P-lacustris_contig965.15987.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig965.15987.1 vs. uniprot
Match: D8LBK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK2_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 7.330e-27
Identity = 49/81 (60.49%), Postives = 65/81 (80.25%), Query Frame = 1 
Query:    7 QRLVVKENRTELGKKNFWAILLRFKQENVRALAVSPQLLVRWLINDGEYVPSFSWVCPNSAAPMEAARADSFWVALLTPSM 249
            QR VV E RTE+GKKNFW +L RFKQE++R ++VSP  L+ W INDGE +PS +W+CP SA  MEAARAD+++ AL++PS+
Sbjct:  283 QRSVVSELRTEIGKKNFWGVLRRFKQEHLRGISVSPVQLISWYINDGEGMPSHTWICPTSAFAMEAARADAYFTALMSPSL 363
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BLAST of mRNA_P-lacustris_contig965.15987.1 vs. uniprot
Match: D7FPH8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPH8_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 4.110e-26
Identity = 48/81 (59.26%), Postives = 65/81 (80.25%), Query Frame = 1 
Query:    7 QRLVVKENRTELGKKNFWAILLRFKQENVRALAVSPQLLVRWLINDGEYVPSFSWVCPNSAAPMEAARADSFWVALLTPSM 249
            QR VV E RT++GKKNFW +L RFKQE++R ++VSP  L+ W INDGE +PS +W+CP SA  MEAARAD+++ AL++PS+
Sbjct:  458 QRFVVSELRTDIGKKNFWGVLRRFKQEHLRGISVSPVQLISWYINDGEGMPSHTWICPTSAFAMEAARADAYFTALMSPSL 538
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BLAST of mRNA_P-lacustris_contig965.15987.1 vs. uniprot
Match: D7G8U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8U7_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 4.540e-26
Identity = 49/83 (59.04%), Postives = 64/83 (77.11%), Query Frame = 1 
Query:    1 KFQRLVVKENRTELGKKNFWAILLRFKQENVRALAVSPQLLVRWLINDGEYVPSFSWVCPNSAAPMEAARADSFWVALLTPSM 249
            K QR+ V E+R ELGKKNFW +L RFKQE++R + VSP  +V W+I D + VPS SW+CP+SA PM+AARAD+F +AL  PS+
Sbjct:  107 KLQRVCVTEDRVELGKKNFWGLLRRFKQEHLRGIFVSPLQMVTWIIQDQQAVPSSSWICPSSAFPMDAARADAFGIALFCPSL 189
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BLAST of mRNA_P-lacustris_contig965.15987.1 vs. uniprot
Match: D7G6N0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6N0_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 8.240e-12
Identity = 29/52 (55.77%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:   94 RALAVSPQLLVRWLINDGEYVPSFSWVCPNSAAPMEAARADSFWVALLTPSM 249
            R ++VSP  L+ W INDGE +PS +W+CP SA  MEAARAD+++ AL++PS+
Sbjct:  219 RGISVSPVQLISWDINDGEGMPSHTWICPTSAFAMEAARADAYFTALISPSL 270
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig965.15987.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LBK2_ECTSI7.330e-2760.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FPH8_ECTSI4.110e-2659.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8U7_ECTSI4.540e-2659.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G6N0_ECTSI8.240e-1255.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig965contigP-lacustris_contig965:62744..63159 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size250
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817394.8227522-CDS-P-lacustris_contig965:62744..629091622817394.8227522-CDS-P-lacustris_contig965:62744..62909Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig965 62745..62909 -
1693495034.1434684-CDS-P-lacustris_contig965:62744..629091693495034.1434684-CDS-P-lacustris_contig965:62744..62909Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig965 62745..62909 -
1622817394.8390853-CDS-P-lacustris_contig965:63075..631591622817394.8390853-CDS-P-lacustris_contig965:63075..63159Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig965 63076..63159 -
1693495034.1541383-CDS-P-lacustris_contig965:63075..631591693495034.1541383-CDS-P-lacustris_contig965:63075..63159Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig965 63076..63159 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig965.15987.1prot_P-lacustris_contig965.15987.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig965 62745..63159 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig965.15987.1

>prot_P-lacustris_contig965.15987.1 ID=prot_P-lacustris_contig965.15987.1|Name=mRNA_P-lacustris_contig965.15987.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=83bp
KFQRLVVKENRTELGKKNFWAILLRFKQENVRALAVSPQLLVRWLINDGE
YVPSFSWVCPNSAAPMEAARADSFWVALLTPSM
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mRNA from alignment at P-lacustris_contig965:62744..63159-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig965.15987.1 ID=mRNA_P-lacustris_contig965.15987.1|Name=mRNA_P-lacustris_contig965.15987.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=416bp|location=Sequence derived from alignment at P-lacustris_contig965:62744..63159- (Pleurocladia lacustris SAG_25_93)
AAGTTCCAGCGTCTGGTCGTCAAAGAGAACAGGACGGAGCTGGGGAAGAA
GAATTTCTGGGCCATTCTTCTGCGCTTCAAGCAGGTCAGAGTCCACGCCG
TGCATTGCAGACAGGGGACGGGAATGTTTAGGGGAGATCGCGCTTGAGGG
TGGTACGCTCCTGCTCCTTGTCATCGTAGTTACCCACTCACGAATCATGT
CACATCTTTGACGCCCCTCACTCGTCGGCAACCCCCTGCGTCCATTTCAG
GAGAACGTCCGGGCCCTCGCAGTGTCTCCCCAGCTCCTCGTCAGATGGTT
GATCAACGACGGCGAGTACGTGCCCTCCTTCTCCTGGGTCTGCCCGAACA
GCGCGGCTCCCATGGAGGCTGCCCGGGCGGACTCATTTTGGGTCGCGTTG
TTGACACCTTCCATGT
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Coding sequence (CDS) from alignment at P-lacustris_contig965:62744..63159-

>mRNA_P-lacustris_contig965.15987.1 ID=mRNA_P-lacustris_contig965.15987.1|Name=mRNA_P-lacustris_contig965.15987.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=498bp|location=Sequence derived from alignment at P-lacustris_contig965:62744..63159- (Pleurocladia lacustris SAG_25_93)
AAGTTCCAGCGTCTGGTCGTCAAAGAGAACAGGACGGAGCTGGGGAAGAA
GAATTTCTGGGCCATTCTTCTGCGCTTCAAGCAGAAGTTCCAGCGTCTGG
TCGTCAAAGAGAACAGGACGGAGCTGGGGAAGAAGAATTTCTGGGCCATT
CTTCTGCGCTTCAAGCAGGAGAACGTCCGGGCCCTCGCAGTGTCTCCCCA
GCTCCTCGTCAGATGGTTGATCAACGACGGCGAGTACGTGCCCTCCTTCT
CCTGGGTCTGCCCGAACAGCGCGGCTCCCATGGAGGCTGCCCGGGCGGAC
TCATTTTGGGTCGCGTTGTTGACACCTTCCATGGAGAACGTCCGGGCCCT
CGCAGTGTCTCCCCAGCTCCTCGTCAGATGGTTGATCAACGACGGCGAGT
ACGTGCCCTCCTTCTCCTGGGTCTGCCCGAACAGCGCGGCTCCCATGGAG
GCTGCCCGGGCGGACTCATTTTGGGTCGCGTTGTTGACACCTTCCATG
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