mRNA_P-lacustris_contig961.15971.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig961.15971.1
Unique NamemRNA_P-lacustris_contig961.15971.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig961.15971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig961contigP-lacustris_contig961:80038..80605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size568
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig961.15971.1prot_P-lacustris_contig961.15971.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig961 80203..80508 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817391.8446183-UTR-P-lacustris_contig961:80037..802021622817391.8446183-UTR-P-lacustris_contig961:80037..80202Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig961 80038..80202 +
1693495031.514859-UTR-P-lacustris_contig961:80037..802021693495031.514859-UTR-P-lacustris_contig961:80037..80202Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig961 80038..80202 +
1622817391.8696742-UTR-P-lacustris_contig961:80508..806051622817391.8696742-UTR-P-lacustris_contig961:80508..80605Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig961 80509..80605 +
1693495031.534313-UTR-P-lacustris_contig961:80508..806051693495031.534313-UTR-P-lacustris_contig961:80508..80605Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig961 80509..80605 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817391.8570106-CDS-P-lacustris_contig961:80202..805081622817391.8570106-CDS-P-lacustris_contig961:80202..80508Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig961 80203..80508 +
1693495031.5248158-CDS-P-lacustris_contig961:80202..805081693495031.5248158-CDS-P-lacustris_contig961:80202..80508Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig961 80203..80508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig961.15971.1

>prot_P-lacustris_contig961.15971.1 ID=prot_P-lacustris_contig961.15971.1|Name=mRNA_P-lacustris_contig961.15971.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=102bp
MCLCVCRGTTATGVAGWPLVPSVERKQMDQNTRNQTTSSWNQVGLHKRWP
PGRRLAIGQALLRAHHIACGCVRASRRRRDCRFSVERTAKRSRFFSVDTE
T*
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mRNA from alignment at P-lacustris_contig961:80038..80605+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig961.15971.1 ID=mRNA_P-lacustris_contig961.15971.1|Name=mRNA_P-lacustris_contig961.15971.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=568bp|location=Sequence derived from alignment at P-lacustris_contig961:80038..80605+ (Pleurocladia lacustris SAG_25_93)
GTGGAGAGAGAGCTGGGAAGCAGTGAAAATTCTCTAGTGTTTTTTTTTAG
TCGCGACATACAGACACGAAACCCCTATAAAGGGCTTCAGGACTGAGGGC
CTCACAAACGGTGGCCGCCAGCCAGGACGGAGGTCGGCGAATGGAGTGGC
CCTGGTCCGcGGGGGATGTGTCTGTGTGTGTGCAGAGGCACCACTGCGAC
AGGAGTGGCGGGGTGGCCATTGGTGCCTTCTGTCGAGAGGAAGCAAATGG
ATCAAAACACTCGAAATCAGACTACAAGTAGTTGGAATCAGGTAGGGCTT
CACAAACGGTGGCCGCCAGGACGGAGGTTGGCGATTGGGCAGGCCCTGCT
CCGCGCACATCACATCGCCTGTGGGTGTGTGCGGGCATCGCGGCGGCGGC
GTGACTGTAGGTTCAGCGTGGAGAGAACTGCAAAGCGGTCAAGATTCTTC
AGTGTTGACACTGAAACCTAAGGGGCTTCAGAACTACATATGTTTGTTCC
TGTCATTTTAATCACCAAGCAGGAGACCAAACAACAAGGAGATCATGTGC
ATCAGTTACTATCAATCA
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Coding sequence (CDS) from alignment at P-lacustris_contig961:80038..80605+

>mRNA_P-lacustris_contig961.15971.1 ID=mRNA_P-lacustris_contig961.15971.1|Name=mRNA_P-lacustris_contig961.15971.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=612bp|location=Sequence derived from alignment at P-lacustris_contig961:80038..80605+ (Pleurocladia lacustris SAG_25_93)
ATGTGTCTGTGTGTGTGCAGAGGCACCACTGCGACAGGAGTGGCGGGGTG
GCCATTGGTGCCTTCTGTCGAGAGGAAGCAAATGGATCAAAACACTCGAA
ATCAGACTACAAGTAGTTGGAATCAGGTAGGGCTTCACAAACGGTGGCCG
CCAGGACGGAGGTTGGCGATTGGGCAGGCCCTGCTCCGCGCACATCACAT
CGCCTGTGGGTGTGTGCGGGCATCGCGGCGGCGGCGTGACTGTAGGTTCA
GCGTGGAGAGAACTGCAAAGCGGTCAAGATTCTTCAGTGTTGACACTGAA
ACCTAAATGTGTCTGTGTGTGTGCAGAGGCACCACTGCGACAGGAGTGGC
GGGGTGGCCATTGGTGCCTTCTGTCGAGAGGAAGCAAATGGATCAAAACA
CTCGAAATCAGACTACAAGTAGTTGGAATCAGGTAGGGCTTCACAAACGG
TGGCCGCCAGGACGGAGGTTGGCGATTGGGCAGGCCCTGCTCCGCGCACA
TCACATCGCCTGTGGGTGTGTGCGGGCATCGCGGCGGCGGCGTGACTGTA
GGTTCAGCGTGGAGAGAACTGCAAAGCGGTCAAGATTCTTCAGTGTTGAC
ACTGAAACCTAA
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