mRNA_P-lacustris_contig960.15962.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig960.15962.1
Unique NamemRNA_P-lacustris_contig960.15962.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig960.15962.1 vs. uniprot
Match: A0A6H5KTQ0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTQ0_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 3.210e-56
Identity = 100/118 (84.75%), Postives = 110/118 (93.22%), Query Frame = 1 
Query:  448 QKKVLVKKERQSLEGQLSSLIRIEGNTMSCKKQDCVRRLAEELEALQDNAAEFGSQKTGLTGSWKLIYSSAACEGKSGSKG-DRLTSIEDISYVSENYRLSHT-DKDDLRVYKRVTPP 795
            +KKVLVKKERQSLEGQLSSLIRIEGN+MSCKKQDCVRRLA ELE+LQDNAAEFGSQK+GLTGSWKLIYS AACEGK G +G DRL +IE ISYVSENYRLSH+ ++DDLRVYKRV+PP
Sbjct:   91 KKKVLVKKERQSLEGQLSSLIRIEGNSMSCKKQDCVRRLATELESLQDNAAEFGSQKSGLTGSWKLIYSRAACEGKGGGRGGDRLPTIEVISYVSENYRLSHSGEEDDLRVYKRVSPP 208
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BLAST of mRNA_P-lacustris_contig960.15962.1 vs. uniprot
Match: D7G1W5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1W5_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 3.230e-40
Identity = 86/148 (58.11%), Postives = 98/148 (66.22%), Query Frame = 1 
Query:  529 MSCKKQDCVRRLAEELEALQDNAAEFGSQKTGLTGSWKLIYSSAACEGKSGSKG-DRLTSIEDISYVSENYRLSHT-DKDDLRVYKRVTPPAPRAASDDTSAAMFVGTGAGDKNTAGRASATGGG---RRSQVKQPMRRRMFFGFLRR 957
            +  +K+DCVRRLA ELE+LQDNAAEFGSQK+GLTGSWKLIYSSAACEG  G +G DRLT+IEDISYVSENYRLSH+ ++DDLRVYKRV+PP                                     RR   K P+RRR FFGFLRR
Sbjct:    5 LDSQKRDCVRRLATELESLQDNAAEFGSQKSGLTGSWKLIYSSAACEGNGGGRGGDRLTTIEDISYVSENYRLSHSGEQDDLRVYKRVSPPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRGVSKLPLRRRTFFGFLRR 152
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BLAST of mRNA_P-lacustris_contig960.15962.1 vs. uniprot
Match: D7G1W6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1W6_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 1.250e-8
Identity = 42/101 (41.58%), Postives = 60/101 (59.41%), Query Frame = 2 
Query:  191 MKLSVFLLLLPSVSAFTAVSPNSMLKHRTSSPAQGGRIGASSIRMGA-KQSNGEGAWSLASWWSDVVQSATQNRSKNPTAADAYAELKRRCW*RRRGSRWR 490
            MKLSVFL+LLPSVSAF  VSP  ++ +      Q  +  ++   +GA KQ+NGEG WS+A+ W DVV SA      + TA       +++ W +++ S WR
Sbjct:    1 MKLSVFLVLLPSVSAF--VSPRPVVLNNHLQRQQQQQRSSTPTAVGAWKQANGEGPWSVATLWRDVVGSAMNKAKVDSTARKPTTNSRKKGWSKKKSSLWR 99
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig960.15962.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KTQ0_9PHAE3.210e-5684.75Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7G1W5_ECTSI3.230e-4058.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G1W6_ECTSI1.250e-841.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig960contigP-lacustris_contig960:8338..12625 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_003880.1
Exons4
Model size969
Cds size432
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig960.15962.1prot_P-lacustris_contig960.15962.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig960 9393..12616 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817391.2538002-UTR-P-lacustris_contig960:8337..87611622817391.2538002-UTR-P-lacustris_contig960:8337..8761Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig960 8338..8761 +
1693495030.9964736-UTR-P-lacustris_contig960:8337..87611693495030.9964736-UTR-P-lacustris_contig960:8337..8761Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig960 8338..8761 +
1622817391.2673502-UTR-P-lacustris_contig960:9288..93921622817391.2673502-UTR-P-lacustris_contig960:9288..9392Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig960 9289..9392 +
1693495031.0079832-UTR-P-lacustris_contig960:9288..93921693495031.0079832-UTR-P-lacustris_contig960:9288..9392Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig960 9289..9392 +
1622817391.3104692-UTR-P-lacustris_contig960:12616..126251622817391.3104692-UTR-P-lacustris_contig960:12616..12625Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig960 12617..12625 +
1693495031.0662417-UTR-P-lacustris_contig960:12616..126251693495031.0662417-UTR-P-lacustris_contig960:12616..12625Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig960 12617..12625 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817391.2776656-CDS-P-lacustris_contig960:9392..94041622817391.2776656-CDS-P-lacustris_contig960:9392..9404Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig960 9393..9404 +
1693495031.02749-CDS-P-lacustris_contig960:9392..94041693495031.02749-CDS-P-lacustris_contig960:9392..9404Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig960 9393..9404 +
1622817391.287683-CDS-P-lacustris_contig960:10952..110471622817391.287683-CDS-P-lacustris_contig960:10952..11047Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig960 10953..11047 +
1693495031.0403292-CDS-P-lacustris_contig960:10952..110471693495031.0403292-CDS-P-lacustris_contig960:10952..11047Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig960 10953..11047 +
1622817391.2980533-CDS-P-lacustris_contig960:12291..126161622817391.2980533-CDS-P-lacustris_contig960:12291..12616Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig960 12292..12616 +
1693495031.0500064-CDS-P-lacustris_contig960:12291..126161693495031.0500064-CDS-P-lacustris_contig960:12291..12616Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig960 12292..12616 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig960.15962.1

>prot_P-lacustris_contig960.15962.1 ID=prot_P-lacustris_contig960.15962.1|Name=mRNA_P-lacustris_contig960.15962.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=144bp
MSCKKQDCVRRLAEELEALQDNAAEFGSQKTGLTGSWKLIYSSAACEGKS
GSKGDRLTSIEDISYVSENYRLSHTDKDDLRVYKRVTPPAPRAASDDTSA
AMFVGTGAGDKNTAGRASATGGGRRSQVKQPMRRRMFFGFLRR*
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mRNA from alignment at P-lacustris_contig960:8338..12625+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig960.15962.1 ID=mRNA_P-lacustris_contig960.15962.1|Name=mRNA_P-lacustris_contig960.15962.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=4288bp|location=Sequence derived from alignment at P-lacustris_contig960:8338..12625+ (Pleurocladia lacustris SAG_25_93)
ACCTCGCCCTCTCAAACTATCTCTCGCAGGTGCAAAGCCCACGTCACCCA
AATTTTCGTTTCAATTCGAAAAAACAACCTCAATTTTCTCACAGCCAGGT
TTTTCGACACAACTAACTCTTCAACCTCGCCCAGCACTAGTGAACCTGAT
TGCGCTTTTGCTGGCTGTGCCCCACCGCAAGACCAGCACCATGAAGCTCT
CCGTGTTTTTATTGCTCCTCCCCTCCGTCTCGGCCTTCACGGCGGTCTCA
CCGAACTCGATGTTGAAGCATCGCACGTCGAGTCCTGCCCAGGGTGGACG
GATCGGTGCTTCATCCATTAGGATGGGGGCGAAACAATCCAATGGCGAAG
GTGCTTGGTCCCTCGCTTCGTGGTGGAGCGATGTGGTGCAATCTGCCACG
CAGAATAGGTCGAAGAATCCCACGGTGAGAAGAGAGAGAGGGGAGGAGCT
CGATGGCTGTATCATCCTTTTCTGTTCATGACGATAAATTGCTCTCAGAA
GTTTGTTGTGTTTTTTGGCAGATATGGACGCCTCATGCTCATCCGGTCTC
CATCGCACCCTTTCTAGGCAACAAGCGCGGGTTCCAAACGTTGCAAACGA
TCGCAGCAGTTATCCGCCTCTCTCATTTGCTGATGCTTCTGCCGATGCGC
CAACAGCGGCAGCTTGCGCTCGGCAGCATCGCCTGGCGTTGGCATTGGCA
TTGGCTTATCTCCTCATCTCACACACGCGAATATAACGGCAGAAATGCAC
TGCCCGCACTGCCCGCCGACGTAATTGCAACGAGTTTCGGGTAGGTTCAC
GCACCCCCTGACCTTTCCTGCTTCTCTCGCCACTTCCTCTTCTGCTATCA
TGGCTCTTTCTTCTCTGTACACATCACGCACACACTCTGAACTTTCGTCT
GCGCCTCTTCTGTCTGTCTCTCCATGATTCCGGCACACATTCCGGATGAA
GGCTGCTGATGCGTACGCCGAGCTCAAAAGAAGGTGCTGGTGAAGAAGGA
GAGGCAGTCGCTGGAGGGACAGCTCAGCTCCCTTATCCGCATCGAAGGAA
ACACCATGTCGTGCAAGGTTGGTTTTCTTTCGGGTGGGCCGGACCGGACC
ATCATGATCTACTACTGCTGTTGACTGCTACTGTTTTTTTGTTTTTTGGG
TTGGCAACTTTCCTTCCCTGTCTGGCTGAGCCCATCCTGACGCTCGTTGC
ATCCTTCGCTGCATACCAAACTTTGATCGAAGGGTGACACATGTATACAC
ATGCGAACAGCGGTGCGCGCTTTGTGCCTGGGCACCGGGCGGGCCCACGA
GCGTGTCTCATACGCATTGCTCGATGATGGCTGTTTTTTGTTGTGGCGAT
TTCCACCACCCCTCCTTGTCTGCTGTTGTATGAACTACAATGAATACTCA
TAACAAGTACAAGTTAGACTATATTGCGAGTAAAACATGCATTTTGTTGT
CTTGTACTCGGAGTACATTTTTTTTTGTCACGCCCTCATCGAGAAAAGTC
TCTGCAGAAGGGGTGATTACTTGTACACAACAGCCGTATGCACACGAGCT
AGAGGTCGTATCAGGCTGATTCTCCCCTACAGCAGTATTGAGGAAAACCG
TGCCACGCGACCGCACGTTTCGACGACCGTAGGGTTGGTATCACTACAGG
CAGAACGATGGTTCGCGCGCTGACTCTTCTCTCTGCTCGGTCCTCGCGTC
AGCTGCCACACATTTACTTGAAAATGAGAAAAAGGAACTCGGAGTGTCAA
CCTCGCACTTCGCTTTTCCACCGTCTTCTCCTTTCTCTTTTCCCAAGCCG
GAGTTGTGGCGCGCGCGTGTGAGAGAGAGCTTAAGCCAGCCGATCGTGTC
TCTGTCCTGCCTGTTGTGCGACAAACCTGCGGGGTTGGATATACAAGAAG
ACCCGGGTTGCACCTAGCACAAAAATTGCCGCTCTTTTTTTTTTTGTGAC
TAAAAGTTCATGAGCACGGAGCCCCCCGTGCCCaAAAAGCACACTGTGAT
GAGCAGTTATTCTTGAACAGCTCCGGCTGTAGTTGCGATCCAAAATTCGG
GCGAGTAATTCTGGAATCTGTGAGAAATATCCTACACGTTGAATTATCGC
GAGCCCGCTTAGATGAAGAAAAGTTGGCGGGCAACGCGCTGAAGTGTCGT
TTTGCGGGTGGTATTTTGAGCTGTCTGGCAGGATCTCTCGCGGAAAACGA
GACCAGACGGCAGCTGCTGGGGAACTTGGGCTGTAGTTGCGATCCAAATT
CGGGCGAGTAATTATGACTACTCCCATAGGATATCTATGCAGTCTTCAAG
CGCTGGTTGATTTTGTGCACTTCCAGGTTGGCGGGCAACCGCGTGAAGAT
GGCCTCTCGTGCCGCTGCTCACTTGAATTTTGGGTAAGGGGGCCAAAAAA
TAGCCCCCACCGAAGGAGTCTGTGATTCATATGGTCACAACTTTTTTCGT
TTCATGCCGCTTGGTCGTTCGTCAACCCCCCGCCCTTCAATGGAAATCCA
CCTATGTAACTCATAACTCATATCTCCGCCCCTGCGTCCGTCCCTGCGGT
TGCCGTACGATCCTGTCATTCACGGATCCAAATCAAACCAAATGGATCAT
TGACTTGATTCACAGAAGCAGGACTGCGTGCGACGCTTGGCGGAGGAGCT
GGAGGCCCTCCAGGACAACGCGGCGGAGTTCGGGTCTCAGAAGACGGGAC
TCACGGGGAGGTGCGTGCGCGTTGAGTACTCTCGCGTTGCAATGCGTGGC
TTGGTTGTTGGTTAGCAATCGCGAGGTCAACAAGTCGGCGCCCGAGTTGT
TCACCTTTTCCCTTTCCAATCTGCAAAACGTAGTCGAAGTTGCCCTCAAG
CAATGCTTGACACACCGCTGCTATCGGCTCTAGTGTCGGGTGTAGAATCG
CTGCACTCCTTTCTTGTCCAGAGCTCTGCCTGATTCTGAGGACGTCGTTG
TAGGTTGCCGATGATTTTTTTCGGTCGAGTGGCCCCGCTTGGCTGAGCAG
AGCGTTGCCGCGGCAGTGCCGGCCCTCACGCAACATGCCTGGTTCGAGGA
GATCTAGGGTGAAGCTCGTGTCCAAGCCCAGTGGCAATGGTGACACATCG
AGGTCGACATCGCATCACTGATACAGCGCTGTGAACCGTTGCTCTCTTCA
TGTAATATCGCGCTGTAATTTCTGGAATGGGCTTTTTGCGCTTGTATTTG
TCCCCTAAGCCCGTCACCCGTGTTGCAGGTGTAGCACTTTTTTTTTTTTT
TTGGCCAAAAGTCACGCAATACGGAGCCCCCCGAGGCCATGAACACACTT
GGGATGCAGTTATTCCTCAACAGCTCGGGCTATAGTTGTGATCCAAATTC
GGAAGGGTCGCTCAAGATCTCTGAGGAAATATAAATATCTACACCTTGAC
ACCATCGTAAGACTGTTAGGGGTCGTGTATTTCGGGCGTTGGGGGTTACA
TCTGCAGCTGGGTCAGGCAGGATCCCTCGCGCAAACGAATTAGAACGGAA
ATATCTTGGGACCATAGGGGGCAGTGCTGATCCAATATTCGGTAGGATGA
CATTCCTTGATTGTACATATATTTATTCTGTCTCCAAGCGCTGGTCGATT
TAGTGTACTCCTTCGATGTCGGGAAGCCGCCTATAGATGACCTGCTCGTG
TGCCTGTTTACTCGAATTTTGGGTGAGAGGGGCCAAAATGAATAAACCAA
GCCGAGGGGAGAGGTACTGTGACCGTGGCCACTTTTTTTTTTGCCGTCTG
CAACCCGGGTGATGCCTCTTCCAAAGTGTTGCCGCTCACCCCCGCCGGTC
ACCCTCGCTGTTTCTTCCTCCACTTCCTCCCTTGTGTGTTCTCGCGCGCG
CCTGCCGTATTGTGGGTGAAAATGTCTCCTCAAAACTTTTTCTCATCCGT
GAAAACACAAACCAACACCACCTCCACGAACGAATCTGTACATGCGTTCG
ACAGCTGGAAGCTGATCTACTCGAGCGCGGCTTGCGAAGGGAAGAGCGGC
AGCAAGGGCGACCGCCTTACCTCGATCGAAGACATCTCGTACGTCTCCGA
GAACTACCGCTTGTCCCACACTGACAAGGACGATCTGCGTGTGTACAAGC
GGGTCACCCCACCCGCACCGCGAGCAGCGAGCGATGACACTTCCGCGGCC
ATGTTTGTCGGCACCGGCGCGGGGGACAAGAATACGGCGGGGCGGGCCTC
GGCTACCGGGGGCGGCCGGCGGTCGCAGGTCAAGCAGCCCATGCGGCGTC
GCATGTTTTTCGGTTTCCTTCGCAGATAAGGAGGAGGG
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Coding sequence (CDS) from alignment at P-lacustris_contig960:8338..12625+

>mRNA_P-lacustris_contig960.15962.1 ID=mRNA_P-lacustris_contig960.15962.1|Name=mRNA_P-lacustris_contig960.15962.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=864bp|location=Sequence derived from alignment at P-lacustris_contig960:8338..12625+ (Pleurocladia lacustris SAG_25_93)
ATGTCGTGCAAGATGTCGTGCAAGAAGCAGGACTGCGTGCGACGCTTGGC
GGAGGAGCTGGAGGCCCTCCAGGACAACGCGGCGGAGTTCGGGTCTCAGA
AGACGGGACTCACGGGGAGAAGCAGGACTGCGTGCGACGCTTGGCGGAGG
AGCTGGAGGCCCTCCAGGACAACGCGGCGGAGTTCGGGTCTCAGAAGACG
GGACTCACGGGGAGCTGGAAGCTGATCTACTCGAGCGCGGCTTGCGAAGG
GAAGAGCGGCAGCAAGGGCGACCGCCTTACCTCGATCGAAGACATCTCGT
ACGTCTCCGAGAACTACCGCTTGTCCCACACTGACAAGGACGATCTGCGT
GTGTACAAGCGGGTCACCCCACCCGCACCGCGAGCAGCGAGCGATGACAC
TTCCGCGGCCATGTTTGTCGGCACCGGCGCGGGGGACAAGAATACGGCGG
GGCGGGCCTCGGCTACCGGGGGCGGCCGGCGGTCGCAGGTCAAGCAGCCC
ATGCGGCGTCGCATGTTTTTCGGTTTCCTTCGCAGATAACTGGAAGCTGA
TCTACTCGAGCGCGGCTTGCGAAGGGAAGAGCGGCAGCAAGGGCGACCGC
CTTACCTCGATCGAAGACATCTCGTACGTCTCCGAGAACTACCGCTTGTC
CCACACTGACAAGGACGATCTGCGTGTGTACAAGCGGGTCACCCCACCCG
CACCGCGAGCAGCGAGCGATGACACTTCCGCGGCCATGTTTGTCGGCACC
GGCGCGGGGGACAAGAATACGGCGGGGCGGGCCTCGGCTACCGGGGGCGG
CCGGCGGTCGCAGGTCAAGCAGCCCATGCGGCGTCGCATGTTTTTCGGTT
TCCTTCGCAGATAA
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