mRNA_P-lacustris_contig959.15944.1 (mRNA) Pleurocladia lacustris SAG_25_93
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Overview
Homology
BLAST of mRNA_P-lacustris_contig959.15944.1 vs. uniprot
Match: D7FIX0_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIX0_ECTSI) HSP 1 Score: 550 bits (1417), Expect = 8.090e-167 Identity = 291/441 (65.99%), Postives = 339/441 (76.87%), Query Frame = 3
Query: 990 FRRWPIKRGGSHRHIPEYDSAGHLAL-PSTTQA----AAGGEGIGXXXXXXXXXXXXXXXXXXXXXXXXWSKVSAVVRQKDSGANSGSTWHRDGGIGRSHRQQPSTKLGRKCSNRYRRECSWSRKRVRASVREEDTSPVVDRWEFLVGRWVPLQMARSGDTVGVKSFLEEFPAFPDKENLLRAAVRYKQYSLVEYFLEEQHMDVNLKNAVGMPLVWFSVAFMQRGDSGVMLRYLIQKGADIHLRSSVGQTVLFLLVSSRGKEAIPMLKYLVEECGLSLSHRDDFGSQPLHWAVLYGHLDTVQWICRYTRYIAARANWSKAFERMKQIRLVRPEHMGAARSWRMRGLQKSARSLTPLGVAVLHNHELIAKWLMGYGTAEGEEAMGLSCRRVKLFSEENRDLALVAKTWPELLPEVLRGFERKNFRPRNSFDTDEKRPVAPTG 2297
FRR P+KR + + + +SA L + P T+ A GG G G W +V+ VVRQ D A S ++GG G H + N+YRRECSW+R + RASV+ + SPVVDRWE+LVGRW+PLQMARSGD +GV+SFLE+FPAFPDK+NLLRAAVRYKQYSLVEY LEEQHMDVNLKNA+GMP+VWFSVAFMQRGDSGVMLRYL+QKGADIH++S VGQT+LFLLVSSRGKEAIPMLKYLVEE GLSL+ +DDFGSQPLHWAVL+GHLDTV+WI YT+Y A RANW+KAFE+M++IRLV+PEHMGAARSWR+RGLQKSARSLTPLGVAVLHNHE IA+WLMGYGT EG+ +SC+R +F EENRDLALVAKTWPELLPEVLRGF+ + S+DTDEKRPVAPTG
Sbjct: 203 FRRRPLKRSDTTCKVSDQESASSLVVAPVVTEGQGKPATGGRGEGGEGNPISDSSRASNL---------WRRVAGVVRQNDR-AICTSEPGKNGGSGSQHLSES--------GNKYRRECSWARSKKRASVQAK-LSPVVDRWEYLVGRWIPLQMARSGDVLGVRSFLEKFPAFPDKDNLLRAAVRYKQYSLVEYLLEEQHMDVNLKNAMGMPVVWFSVAFMQRGDSGVMLRYLLQKGADIHIKSRVGQTMLFLLVSSRGKEAIPMLKYLVEELGLSLTEKDDFGSQPLHWAVLHGHLDTVRWISEYTKYPATRANWAKAFEKMQKIRLVKPEHMGAARSWRIRGLQKSARSLTPLGVAVLHNHEHIARWLMGYGT-EGQHC--ISCKRNNIFKEENRDLALVAKTWPELLPEVLRGFQHDMKAQKYSWDTDEKRPVAPTG 621
BLAST of mRNA_P-lacustris_contig959.15944.1 vs. uniprot
Match: A0A6H5K0W6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0W6_9PHAE) HSP 1 Score: 549 bits (1415), Expect = 2.980e-166 Identity = 294/445 (66.07%), Postives = 337/445 (75.73%), Query Frame = 3
Query: 963 TMGGSGSVRFRRWPIKRGGSHRHIPEYDSAGHLALPSTTQAAAGGEGIGXXXXXXXXXXXXXXXXXXXXXXXXWSKVSAVVRQKDSGANSGSTWHRDGGIGRSHRQQPSTKLGRKCSNRYRRECSWSRKRVRASVREEDTSPVVDRWEFLVGRWVPLQMARSGDTVGVKSFLEEFPAFPDKENLLRAAVRYKQYSLVEYFLEEQHMDVNLKNAVGMPLVWFSVAFMQRGDSGVMLRYLIQKGADIHLRSSVGQTVLFLLVSSRGKEAIPMLKYLVEECGLSLSHRDDFGSQPLHWAVLYGHLDTVQWICRYTRYIAARANWSKAFERMKQIRLVRPEHMGAARSWRMRGLQKSARSLTPLGVAVLHNHELIAKWLMGYGTAEGEEAMGLSCRRVKLFSEENRDLALVAKTWPELLPEVLRGFERKNFRPRNSFDTDEKRPVAPTG 2297
+ G +G VRFRR P+KR + + + DSA LA+ A G+G W +V+ VVRQ D GA ++GG G H N+YRRECSW+R + R SV + SPVVDRWE+LVGRW+PLQMARSGD GV+SFLE+FPAFPDK+NLLRAAVRYKQYSLVEY LEEQHMDVNLKN +GMPLVWFSVAFMQRGDSGVMLRYL+QKGADIH++S VGQTVLFLLVSSRGKEAIPMLKYLVEE GLSL+ +D+FGSQPLHWAVLYGHLDTV+WI YT+Y A RANW+KAFE+M+ IRLV+PEHMGAARSWR+RGLQKSARSLTPLGVAVLHNHE IAKWLMGYGT EGE+ +SC+R LF +ENRDLALVAKTWPELLPEVL+GF+ + S+DTDEKRPVAPTG
Sbjct: 144 SRGNTGIVRFRRRPLKRSDTPCKVSDQDSANSLAV---ALVATKGQGKPATGRRGEERGEGNPISGSSRASNLWRRVAGVVRQND-GAICTPEPGKNGGNGSQHLSGS--------GNKYRRECSWARSKKRTSVYAK-LSPVVDRWEYLVGRWIPLQMARSGDVHGVRSFLEKFPAFPDKDNLLRAAVRYKQYSLVEYLLEEQHMDVNLKNVMGMPLVWFSVAFMQRGDSGVMLRYLLQKGADIHIKSRVGQTVLFLLVSSRGKEAIPMLKYLVEELGLSLTEKDEFGSQPLHWAVLYGHLDTVRWISEYTKYPATRANWAKAFEKMQDIRLVQPEHMGAARSWRIRGLQKSARSLTPLGVAVLHNHEHIAKWLMGYGT-EGEQC--ISCKRNNLF-KENRDLALVAKTWPELLPEVLQGFQHDRKVEKYSWDTDEKRPVAPTG 571
BLAST of mRNA_P-lacustris_contig959.15944.1 vs. uniprot
Match: A0A835Z0J0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0J0_9STRA) HSP 1 Score: 152 bits (385), Expect = 3.690e-33 Identity = 109/319 (34.17%), Postives = 159/319 (49.84%), Query Frame = 3
Query: 1389 VVDRWEFLVGRWVPLQMARSGDTVGVKSFLEEFPAFPDKENLLRAAVRYKQYSLVEYFLEEQHMDVNLKNAVGMPLVWFSVAFMQRGDSGVMLRYLIQKGADIHLRSSVGQTVLFLLVSSRGKEAIPMLKYLVEECGLSLSHRDDFG------------------SQPLHWAVLYGHLDTVQWICRYTRYIAARANWS-KAFERMKQIR-------------LVRPEHMGAA-RSWRMRGLQKSARSLTPLGVAVL-----HNHEL-IAKWLMGYGTAEGEEAMGLSCRRVKLFSEENRDLALVAKTWPELLPEVLRGF 2228
+V+RW +V W LQ+ARSGD V+ FL+ FP F +N+ RAA+R+K Y+LVEYFL+E MDVN++N GMP WF+ F+ + D G M++YLI +GA + ++ G T++ LL ++ +AI ++ + + RD G +QP + L + R A R S +A + Q R L+R M AA R + ++S + T V VL H + +A+WLMGYG + M +R LF ++ DL +VAKTWPELLPEVL F
Sbjct: 1554 IVERWGKMVTSWYSLQIARSGDVDDVRRFLKRFPDFKGVDNMFRAAIRFKHYALVEYFLDEVKMDVNVRNGSGMPACWFAAIFLNKSDGGAMMQYLINRGAIVDSVNNWGMTMIHLLATADPAQAIT-----ADDAHSAYNARDSSGHSVATHSRSSLALSKQSLAQPNFNGFILEKLS-------HRRKAAMRLFHSYRALSAVDQYRFYSLPHTTGYAYGLLRGHSMSAAGREQVAQRHKRSGDACTLTFVRVLQLICSHRDRVQVAQWLMGYGPGHSVKCM--RDKRALLFQDQCHDLRMVAKTWPELLPEVLNSF 1858
BLAST of mRNA_P-lacustris_contig959.15944.1 vs. uniprot
Match: A0A485KWW4_9STRA (Aste57867_12946 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KWW4_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 7.350e-9 Identity = 54/219 (24.66%), Postives = 106/219 (48.40%), Query Frame = 1
Query: 2689 VPRGGWNLQSVAAYVLVLALI-PMFQPWTESRDWVTDEQGYTMACIVRRSTTAPAALFLFTRLMEHLAVWRSTGIFIAVIRTVIADTASWSVLFILFEAAFALAFYALLQGNPGYETVWESMVTVFALSVGEINLP--FSENMTLHVVAVLMFVLFMLIVAIVYLNLLVAMMTSGYTEVVQEATAQAMMNRAAALVKWEGIMHPCRRLQAFQMVAPGKG 3336
VP W + AY LV+ + P+ W S +D Y + +V L L+ +++ + R + +I ++ D + ++ LF A+Y+L +G+ G+ET W+S ++V+ + G++N + HV+A L +++ + V+IV LN+L+A+MT+ +++ +A N A++L E + + + + APG G
Sbjct: 1178 VPNSLWACLEILAYSLVVGVTWPLDMGWIPSSS--SDASAYVSSVVV---------LLLWVISLQYFKMHRVISPMVTMIDIMLHDVGRFFAIYGLFHMGLTCAYYSLFRGHDGFETFWQSFLSVYIIMFGQLNTETVLGASGIRHVLAALFLMMYYVAVSIVLLNVLIAIMTTHAGRILERVQEEAEYNHASSLYFME-LKYKQSMGEVLRRSAPGGG 1384
BLAST of mRNA_P-lacustris_contig959.15944.1 vs. uniprot
Match: A0A1Z5KW96_ORNMO (26S proteasome non-ATPase regulatory subunit (Fragment) n=1 Tax=Ornithodoros moubata TaxID=6938 RepID=A0A1Z5KW96_ORNMO) HSP 1 Score: 68.9 bits (167), Expect = 8.350e-8 Identity = 59/215 (27.44%), Postives = 108/215 (50.23%), Query Frame = 1
Query: 2905 GIFIAVIRTVIADTASWSVLFILFEAAFALAFYALLQGNPGYETVWESMVTVFALSVGEINLP--FSEN-MTLHVVAVLMFVLFMLIVAIVYLNLLVAMMTSGYTEVVQEATAQAMMNRAAALVKWEGIMHPCRRLQAF---QMVAPGKGKHSKIILKGWFGGADTEVFCSEEGATAVEPEQSSSGKRVDTHEAVMRELQAIRDMVNRASAPGVR 3531
GI++ + V++ + + ++F LF AFALAF+A+LQ +ET W +++ + VGE+ F EN + + ++ LF++++ ++ NLLV + V+++A Q + + ++ E ++ R + + V P K ++ +LK FG A F S T VE E+ + K + EA+ R LQ + + +N S G R
Sbjct: 507 GIYVVMFTNVLSTFSQFFMVFFLFNVAFALAFFAVLQNQAAFETPWRAIMKTTVMMVGELEYDTIFHENVLPYETSSYILMALFLVLMTVITSNLLVGLAVDDIKGVLEQAELQRLSMQVKLVLTVETMLPSWARRRVVVQRRTVLPNKRSQAQTMLKRMFGTA----FASSR-RTHVE-EKYTLEKVYEHQEAMDRMLQHLEERLNTLSQQGHR 715
BLAST of mRNA_P-lacustris_contig959.15944.1 vs. uniprot
Match: A0A1W0A0Q7_9STRA (Inversin protein alternative isoform (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A0Q7_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 3.080e-7 Identity = 45/173 (26.01%), Postives = 91/173 (52.60%), Query Frame = 1
Query: 2854 LFLFTRLMEHLAVWRSTGIFIAVIRTVIADTASWSVLFILFEAAFALAFYALLQGNPGYETVWESMVTVFALSVGEINL--------PFSENMTLHVVAVLMFVLFMLIVAIVYLNLLVAMMTSGYTEVVQEATAQAMMNRAAALVKWEGIMHPCRRLQAFQMVAPGKGKHSK 3348
L L+ +++L V + G + ++ ++ DT +S+L+ +F+ A+Y LLQG+ GYET+ S VTV+ + G+I P L+V A+ + + M + ++ LN+L+AMM + + +++A +A+ + A +++ E + R++ ++ P H K
Sbjct: 945 LALWILALQYLEVHGTAGYLLPMMHGLLLDTVRFSILYGVFQVGLTCAYYILLQGSDGYETMLNSFVTVYFVLFGQIQTDPISALLDPPHTKPVLYVFAMGLLMFHMAVAIVLLLNVLIAMMNNTLVDGLEKAKLEALASYAKCVLRLELSLGAKERIEMIYVIKPKFLHHHK 1117
BLAST of mRNA_P-lacustris_contig959.15944.1 vs. uniprot
Match: A0A2R5L7P5_9ACAR (Putative transient receptor potential cation channel subfamily protein a member 1 n=2 Tax=Ornithodoros TaxID=6937 RepID=A0A2R5L7P5_9ACAR) HSP 1 Score: 64.3 bits (155), Expect = 1.120e-6 Identity = 55/215 (25.58%), Postives = 107/215 (49.77%), Query Frame = 1
Query: 2905 GIFIAVIRTVIADTASWSVLFILFEAAFALAFYALLQGNPGYETVWESMVTVFALSVGEINLP--FSEN-MTLHVVAVLMFVLFMLIVAIVYLNLLVAMMTSGYTEVVQEATAQAMMNRAAALVKWEGIMHPCRRLQAF---QMVAPGKGKHSKIILKGWFGGADTEVFCSEEGATAVEPEQSSSGKRVDTHEAVMRELQAIRDMVNRASAPGVR 3531
GI++ + V++ + + ++F LF AFALAF+ALLQ +ET W +++ + VGE+ F EN + + ++ LF++++ I+ NLLV + V+++A Q + + ++ E ++ R + + V P K ++ +L+ FG + + T VE E+ + K + EA+ R L+ + + +N + G R
Sbjct: 151 GIYVVMFTNVLSTFSQFFLVFFLFNIAFALAFFALLQNQAAFETPWRAIMKTTVMMVGELEYDTIFHENALPYETSSYILMALFLVLMTIITSNLLVGLAVDDIKGVLEQAELQRLGMQVKLVLTVETMLPTWARRRVVVQRRTVRPNKKSQAQTMLRRLFG-----IAFTSSRRTHVE-EKYTMEKVYEHQEAMDRMLKHLEERLNILTQQGHR 359
BLAST of mRNA_P-lacustris_contig959.15944.1 vs. uniprot
Match: C3YPH3_BRAFL (Ion_trans domain-containing protein n=3 Tax=Branchiostoma floridae TaxID=7739 RepID=C3YPH3_BRAFL) HSP 1 Score: 63.9 bits (154), Expect = 3.110e-6 Identity = 41/131 (31.30%), Postives = 77/131 (58.78%), Query Frame = 1
Query: 2893 WRSTGIFIAVIRTVIA-DTASWSVLFILFEAAFALAFYALLQGNPG--YETVWESMVTVFALSVGEINLPFSENMTLHVVAVLMFVLFMLIVAIVYLNLLVAMMTSGYTEVVQEATAQAMMNRAAALVKWE 3276
W TG F+ +I +IA D A + +++ F FA AF+ + + P +++ + S++T+F +++GE + P +A L+FV+FM++V I+ LN+L+AMM++ + EVV + + +A +V E
Sbjct: 527 WTLTGPFVTMIYKMIAGDMARFGIIYCTFIITFAPAFWIMFRDKPTEKFDSEFGSLMTLFQMTLGEFDYPVFNLAEFPALAKLLFVVFMMLVPIMLLNMLIAMMSNTFQEVVDRSEREWRRQKAKIIVSLE 657
BLAST of mRNA_P-lacustris_contig959.15944.1 vs. uniprot
Match: A0A067BQW2_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BQW2_SAPPC) HSP 1 Score: 62.4 bits (150), Expect = 3.230e-6 Identity = 44/170 (25.88%), Postives = 93/170 (54.71%), Query Frame = 1
Query: 2833 STTAPAALFLFTRLMEHLAVWRSTGIFIAVIRTVIADTASWSVLFILFEAAFALAFYALLQGNPGYETVWESMVTVFALSVGEINL-PF----SENMTLHVVAVLMFVLFMLIVAIVYLNLLVAMMTSGYTEVVQEATAQAMMNRAAALVKWEGIMHPCRRLQAFQMVAP 3327
S T AL++ + +++L V + G + ++R ++ D+ +S+L+ +F+ A+Y LLQG+ GYE+V + +TV+ + G+I P S + L + + + + M I ++ LN+L+AMM + E +++A +A+ + A +++ E + R + ++ P
Sbjct: 42 SGTICLALWILS--LQYLEVHPTAGYLLPMMRGLLLDSVRFSILYGVFQVGLTCAYYILLQGSDGYESVLHTFITVYFVLFGQIQTGPIDDLASTSPVLSIFSKGLLMFHMAIAIVLLLNVLIAMMNNTLVEGLEKAKLEALASYANCILRLELSLDSRERTEMIYVIKP 209
BLAST of mRNA_P-lacustris_contig959.15944.1 vs. uniprot
Match: UPI0003F0BA6B (uncharacterized protein LOC102801514 n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0BA6B) HSP 1 Score: 62.4 bits (150), Expect = 7.040e-6 Identity = 55/236 (23.31%), Postives = 107/236 (45.34%), Query Frame = 1
Query: 2653 REGAERIQECEEVPR-----------GGWNLQSVAAYVLVLALI----------------PMFQPWTESRDWVTDEQGYTMACIVRRSTTAPAALFLFTRLMEHLAVWRSTGIFIAVIRTVIADTASWSVLFILFEAAFALAFYALLQGNPGYETVWESMVTVFALS-VGEINLPFSENMTLHVVAVLMFVLFMLIVAIVYLNLLVAMMTSGYTEVVQEATAQAMMNRAAALVKWE 3276
R+ AE+ +E E R G WN Y L+ ++ P T+ D + ++A + A +F++ RL + + + G FI V+ V+ D + +L ++F F AF+ + G P YE+V +M T+F ++ V + N + V+A +M L++LI A++YL++ +AM++ ++ + + AM+ R+ ++ +E
Sbjct: 274 RKSAEKYEEKVECKRNSWEGRPSNFYGYWNYYDWFVYFLLTVVVLTHLIDIGIASDELCHPRSNDTTQYEDDADHWENESLAGKIHLGWFAFTIIFVWFRLYKSIRAFTHLGPFILVVYIVLGDAGKFLILALMFYLPFTCAFWMIFGGIPFYESVIATMFTLFRMALVDDYNYEGLRDAN-RVMADIMVGLYLLIAAVIYLSIFIAMLSYRFSSMYDNGKSNAMIQRSKIILGFE 508 The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig959.15944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-lacustris_contig959.15944.1 >prot_P-lacustris_contig959.15944.1 ID=prot_P-lacustris_contig959.15944.1|Name=mRNA_P-lacustris_contig959.15944.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=482bp MGGSGSVRFRRWPIKRGGSHRHIPEYDSAGHLALPSTTQAAAGGEGIGNGback to top mRNA from alignment at P-lacustris_contig959:3142..33135+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-lacustris_contig959.15944.1 ID=mRNA_P-lacustris_contig959.15944.1|Name=mRNA_P-lacustris_contig959.15944.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=29994bp|location=Sequence derived from alignment at P-lacustris_contig959:3142..33135+ (Pleurocladia lacustris SAG_25_93)back to top Coding sequence (CDS) from alignment at P-lacustris_contig959:3142..33135+ >mRNA_P-lacustris_contig959.15944.1 ID=mRNA_P-lacustris_contig959.15944.1|Name=mRNA_P-lacustris_contig959.15944.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=2892bp|location=Sequence derived from alignment at P-lacustris_contig959:3142..33135+ (Pleurocladia lacustris SAG_25_93)back to top |