mRNA_P-lacustris_contig958.15938.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig958.15938.1
Unique NamemRNA_P-lacustris_contig958.15938.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig958.15938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig958contigP-lacustris_contig958:35551..36125 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size576
Cds size414
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817386.2880774-CDS-P-lacustris_contig958:35550..359641622817386.2880774-CDS-P-lacustris_contig958:35550..35964Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig958 35551..35964 +
1693495026.8088825-CDS-P-lacustris_contig958:35550..359641693495026.8088825-CDS-P-lacustris_contig958:35550..35964Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig958 35551..35964 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817386.3028111-UTR-P-lacustris_contig958:35964..361251622817386.3028111-UTR-P-lacustris_contig958:35964..36125Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig958 35965..36125 +
1693495026.8193781-UTR-P-lacustris_contig958:35964..361251693495026.8193781-UTR-P-lacustris_contig958:35964..36125Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig958 35965..36125 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig958.15938.1prot_P-lacustris_contig958.15938.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig958 35551..35964 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig958.15938.1

>prot_P-lacustris_contig958.15938.1 ID=prot_P-lacustris_contig958.15938.1|Name=mRNA_P-lacustris_contig958.15938.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=138bp
SLSPDFGRAALINSEPQLVICTTGQQLRDAPYYDCVCVCVFFFHPFYSGC
YACPTPRRLSGYQPAGVTQKGSYVPTPEAPNRHPAVLALIFMVLTTFSSI
KVSCCVVAHTLHIVSKFASLLLYLYSSSFFISVGLSS*
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mRNA from alignment at P-lacustris_contig958:35551..36125+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig958.15938.1 ID=mRNA_P-lacustris_contig958.15938.1|Name=mRNA_P-lacustris_contig958.15938.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=575bp|location=Sequence derived from alignment at P-lacustris_contig958:35551..36125+ (Pleurocladia lacustris SAG_25_93)
TCTCTCTCTCCCGACTTCGGGAGGGCGGCCTTAATTAATAGCGAGCCGCA
ACTAGTAATATGTACAACTGGACAGCAATTACGTGATGCTCCATATTATG
ATTGTGTGTGTGTGTGTGTTTTTTTTTTTCATCCCTTCTATTCTGGGTGC
TATGCCTGCCCTACACCTCGGAGATTGTCGGGTTACCAACCAGCCGGGGT
CACACAGAAGGGTTCCTACGTTCCTACCCCTGAGGCCCCCAACCGCCATC
CTGCGGTACTTGCCTTGATTTTTATGGTCTTGACCACATTTTCTTCCATC
AAGGTTAGTTGCTGTGTAGTCGCTCACACTCTCCACATAGTTTCCAAGTT
TGCTTCACTACTGTTGTACTTGTACAGCAGTAGTTTCTTTATTTCGGTGG
GACTGTCATCGTGAACAAATCATTTCAATCATTTACTCTGCGGCCAAATG
CTATCATTCTCAGGTTGAGGGTGCCGTTGTGAGTCTTCTCTCTCTCTCTC
CTCTCCCCAGTCCGCACCTCATGGAGAAATTTCGAAGCTCGCTCCAAGAC
CTTCTTCCAGTCGGGCATCTTTTCG
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Coding sequence (CDS) from alignment at P-lacustris_contig958:35551..36125+

>mRNA_P-lacustris_contig958.15938.1 ID=mRNA_P-lacustris_contig958.15938.1|Name=mRNA_P-lacustris_contig958.15938.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=828bp|location=Sequence derived from alignment at P-lacustris_contig958:35551..36125+ (Pleurocladia lacustris SAG_25_93)
TCTCTCTCTCCCGACTTCGGGAGGGCGGCCTTAATTAATAGCGAGCCGCA
ACTAGTAATATGTACAACTGGACAGCAATTACGTGATGCTCCATATTATG
ATTGTGTGTGTGTGTGTGTTTTTTTTTTTCATCCCTTCTATTCTGGGTGC
TATGCCTGCCCTACACCTCGGAGATTGTCGGGTTACCAACCAGCCGGGGT
CACACAGAAGGGTTCCTACGTTCCTACCCCTGAGGCCCCCAACCGCCATC
CTGCGGTACTTGCCTTGATTTTTATGGTCTTGACCACATTTTCTTCCATC
AAGGTTAGTTGCTGTGTAGTCGCTCACACTCTCCACATAGTTTCCAAGTT
TGCTTCACTACTGTTGTACTTGTACAGCAGTAGTTTCTTTATTTCGGTGG
GACTGTCATCGTGATCTCTCTCTCCCGACTTCGGGAGGGCGGCCTTAATT
AATAGCGAGCCGCAACTAGTAATATGTACAACTGGACAGCAATTACGTGA
TGCTCCATATTATGATTGTGTGTGTGTGTGTGTTTTTTTTTTTCATCCCT
TCTATTCTGGGTGCTATGCCTGCCCTACACCTCGGAGATTGTCGGGTTAC
CAACCAGCCGGGGTCACACAGAAGGGTTCCTACGTTCCTACCCCTGAGGC
CCCCAACCGCCATCCTGCGGTACTTGCCTTGATTTTTATGGTCTTGACCA
CATTTTCTTCCATCAAGGTTAGTTGCTGTGTAGTCGCTCACACTCTCCAC
ATAGTTTCCAAGTTTGCTTCACTACTGTTGTACTTGTACAGCAGTAGTTT
CTTTATTTCGGTGGGACTGTCATCGTGA
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