mRNA_P-lacustris_contig955.15927.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig955.15927.1
Unique NamemRNA_P-lacustris_contig955.15927.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig955.15927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig955contigP-lacustris_contig955:8481..8764 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size189
Cds size153
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig955.15927.1prot_P-lacustris_contig955.15927.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig955 8517..8764 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817384.3491142-UTR-P-lacustris_contig955:8480..85161622817384.3491142-UTR-P-lacustris_contig955:8480..8516Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig955 8481..8516 +
1693495025.2680006-UTR-P-lacustris_contig955:8480..85161693495025.2680006-UTR-P-lacustris_contig955:8480..8516Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig955 8481..8516 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817384.3606622-CDS-P-lacustris_contig955:8516..85681622817384.3606622-CDS-P-lacustris_contig955:8516..8568Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig955 8517..8568 +
1693495025.2768238-CDS-P-lacustris_contig955:8516..85681693495025.2768238-CDS-P-lacustris_contig955:8516..8568Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig955 8517..8568 +
1622817384.3729448-CDS-P-lacustris_contig955:8663..87641622817384.3729448-CDS-P-lacustris_contig955:8663..8764Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig955 8664..8764 +
1693495025.2854402-CDS-P-lacustris_contig955:8663..87641693495025.2854402-CDS-P-lacustris_contig955:8663..8764Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig955 8664..8764 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig955.15927.1

>prot_P-lacustris_contig955.15927.1 ID=prot_P-lacustris_contig955.15927.1|Name=mRNA_P-lacustris_contig955.15927.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=51bp
MIGIVIVIGFVLLGREGDDAGTCLLSGHLLCGPLAVWSASCLVWGCVIAL
*
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mRNA from alignment at P-lacustris_contig955:8481..8764+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig955.15927.1 ID=mRNA_P-lacustris_contig955.15927.1|Name=mRNA_P-lacustris_contig955.15927.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=284bp|location=Sequence derived from alignment at P-lacustris_contig955:8481..8764+ (Pleurocladia lacustris SAG_25_93)
AGCTGAAGGGCTAGAGTCTAACACTACATCCATAAGATGATCGGCATCGT
CATCGTCATCGGGTTTGTGCTCTTGGGCAGGGAAGGAGGTGCCCACAGCG
CGAGGGCTATCGTCATCGTCACCTATCCACAGGTCCGTGTCACTACCGGC
GCAGTCGTCACCTCCTCCGCACTCTTGAAGGAGATGATGCAGGGACATGT
CTGCTGTCTGGGCATCTGCTGTGTGGACCGCTGGCTGTGTGGTCTGCTTC
GTGCTTGGTGTGGGGCTGTGTGATTGCCCTCTGA
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Coding sequence (CDS) from alignment at P-lacustris_contig955:8481..8764+

>mRNA_P-lacustris_contig955.15927.1 ID=mRNA_P-lacustris_contig955.15927.1|Name=mRNA_P-lacustris_contig955.15927.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=306bp|location=Sequence derived from alignment at P-lacustris_contig955:8481..8764+ (Pleurocladia lacustris SAG_25_93)
ATGATCGGCATCGTCATCGTCATCGGGTTTGTGCTCTTGGGCAGGGAAGG
AGATGATCGGCATCGTCATCGTCATCGGGTTTGTGCTCTTGGGCAGGGAA
GGAGATGATGCAGGGACATGTCTGCTGTCTGGGCATCTGCTGTGTGGACC
GCTGGCTGTGTGGTCTGCTTCGTGCTTGGTGTGGGGCTGTGTGATTGCCC
TCTGAATGATGCAGGGACATGTCTGCTGTCTGGGCATCTGCTGTGTGGAC
CGCTGGCTGTGTGGTCTGCTTCGTGCTTGGTGTGGGGCTGTGTGATTGCC
CTCTGA
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