mRNA_P-lacustris_contig952.15910.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig952.15910.1
Unique NamemRNA_P-lacustris_contig952.15910.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig952.15910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig952contigP-lacustris_contig952:26307..30964 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size718
Cds size714
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig952.15910.1prot_P-lacustris_contig952.15910.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig952 26309..30964 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817382.4771676-CDS-P-lacustris_contig952:26308..263751622817382.4771676-CDS-P-lacustris_contig952:26308..26375Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig952 26309..26375 -
1693495023.6422834-CDS-P-lacustris_contig952:26308..263751693495023.6422834-CDS-P-lacustris_contig952:26308..26375Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig952 26309..26375 -
1622817382.4910326-CDS-P-lacustris_contig952:27840..280881622817382.4910326-CDS-P-lacustris_contig952:27840..28088Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig952 27841..28088 -
1693495023.652131-CDS-P-lacustris_contig952:27840..280881693495023.652131-CDS-P-lacustris_contig952:27840..28088Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig952 27841..28088 -
1622817382.5033076-CDS-P-lacustris_contig952:29680..298581622817382.5033076-CDS-P-lacustris_contig952:29680..29858Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig952 29681..29858 -
1693495023.659886-CDS-P-lacustris_contig952:29680..298581693495023.659886-CDS-P-lacustris_contig952:29680..29858Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig952 29681..29858 -
1622817382.517105-CDS-P-lacustris_contig952:30322..304601622817382.517105-CDS-P-lacustris_contig952:30322..30460Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig952 30323..30460 -
1693495023.6677127-CDS-P-lacustris_contig952:30322..304601693495023.6677127-CDS-P-lacustris_contig952:30322..30460Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig952 30323..30460 -
1622817382.5274603-CDS-P-lacustris_contig952:30881..309641622817382.5274603-CDS-P-lacustris_contig952:30881..30964Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig952 30882..30964 -
1693495023.6757774-CDS-P-lacustris_contig952:30881..309641693495023.6757774-CDS-P-lacustris_contig952:30881..30964Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig952 30882..30964 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig952.15910.1

>prot_P-lacustris_contig952.15910.1 ID=prot_P-lacustris_contig952.15910.1|Name=mRNA_P-lacustris_contig952.15910.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=238bp
NLLDSPIVLTDLKAHPLEQTFMINILARYKKFSMKAPHKTDLPNLKGRVM
EAGILYRRVENVLPRSSWTHEFEKSLLDLIHGKQTEWDTWGGGHMKGRDK
ELQDLQDLLPSGNKLQKDQQRTVLSKLPVRLEKIARKNADLRGAVDAWDQ
AMAGVNLFVDQHKDLEDVDSSPSDDDDEDDEDDEEDEEDGKDEEDEGADK
TPTVLCTQCKPKEATGFCCPSCGMHHRAKCAHVAESDD
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mRNA from alignment at P-lacustris_contig952:26307..30964-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig952.15910.1 ID=mRNA_P-lacustris_contig952.15910.1|Name=mRNA_P-lacustris_contig952.15910.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=4658bp|location=Sequence derived from alignment at P-lacustris_contig952:26307..30964- (Pleurocladia lacustris SAG_25_93)
AATCTCCTTGACTCTCCAATCGTGTTGACGGACTTGAAGGCGCATCCCCT
CGAGCAGACATTTATGATAAACATACTAGCCAGGTAACGCTCGACACTAT
CGATCGCTGTATTTTAGACATTCAGTTAAGGTGAATGAGTACATGGATAG
CTAAACCTCTGTGTATAATTGACGAAATGTGTTAATGTACATGAACAAGC
AACAGAAGGATATCACCACCGAATGTTTAGAGGAAGAAAAATCCCACCGG
ACGATGTAAAGCAGAAGGGAGGTAGGGGCAACTAGCAACAAACAAGCGGG
CCACGGGGCAACTCAGCTCACCTGTGATACTATTCACTTTTTGTTTTTGG
TGTTGCGCCCTTTTTTGGCCAAAAATCGCCCCGTACTATGTCCTACAACG
TCGCGGGGGGTGGTTACTCTACAGAAGCATGACTTTGTTCGTTGCTGTCC
TCCAGACGCCTACTCATTCGTGCTCGTCGCGTCATCGTCTCGGTGTGCCT
CTAGGTACAAAAAGTTCAGCATGAAGGCCCCACACAAGACCGACCTTCCG
AACCTGAAGGGGCGTGTGATGGAGGCGGGAATCCTCTACAGGAGGGTTGA
GAATGTACTGCCGCGAAGCTCGTGGACACACGAATTTGAGAAGTAAGAGA
TAATTTCTCGCCTCACATAACATAGTTGCACATTGAAAATCTTCTACGTC
GCCGAAGTGTTTCCTCGAAGGTTGACCGGTACCCACCATTTTTCGCCCTA
TCCATACGCAGAGCTCCCTGAAGTTTTGCAAATTCCTGGGTCGTAGACGA
CAGAAACTTAACTGAACGGCCCCATCCCTACGTTCTTGGCATAGGACGGA
TGGATTACTTACATTGTCTCTGCCGCGAATGACTTCGAGAGGGTGTGCTC
TCCATTTTTATTTAACGTGACCTTCGAACATACTACACAACAAACAATCA
TGTACTACCCTGTTTCCCCATTTATTGGCGGCGACACGATGGCAGACCGC
TAACATCTTGTCAGTTTGGGGTAGTCCCTTTCTCAAGAAAGATCGAAGGT
AGCCGTTCAGTATCAAAGTTGATGCGCTTCCGCCTTTTGTCCGATCATCC
ACGCAGGTCGCTGTTGGACCTGATACACGGCAAGCAAACCGAGTGGGACA
CATGGGGAGGTGGCCACATGAAGGGGAGGGACAAGGAACTGCAAGACCTA
CAGGATCTTTTGCCGTCGGGCAACAAGCTCCAGAAGGACCAGCAACGCAC
GGTCTTGAGCAAGCTGCCTGTTCGTCTCGAAAAGGTACCACCCACGTTTC
CACCGGGTGGCTCTTCCTGAGTCTGTACGCTGTGTTTTAGTTCTTTTTTT
TTTTAACGGGGGGGGGGAGTTCCCTATCATCTATTATGGGTGCTCGCCTC
CTTTACAGATCGGTGATGTGGAGGGTGGCACCCAGCCGTGGTCACACAAG
AGGCTTCCTCTCCCTGAGGACCCCTACCCGTCCTCCTGCGGTACATGCCT
TACTTTTTATCGCGAGAAGAGTTCGGCTGTCCCTTTCCCTCGTCGAATGT
AATCGAATTTTGGATACTCCCGAATGAAATCGCGTTCGACTGCAAATTTG
ACAGAAAAAATCACCCCTAGAGGAATTCGAAGTCCAGACTTGCCACTAGT
AGGGTTAACAGGGTAACCACTATACCACTGGGGCAGGGTGACCACACCAA
AACACAATAGCATACCAGTCATCAGCAGATTGCGCTTCTTGTACGTTCAC
TGGTAGCGTTGTCGCCTGTTGCTGTTCTCGCTCCGTTGTTGTCTGTATGA
CCGAGTTTGACTAGCGCGGTCTGCACGATGCACGATGTTGGTGATCTCAT
GCTCGTAAAAAAACAAAGGCGTTCTCACCCTGTTGCCTCCTTAGGCGTGC
AGAGCGTGCACAGTACCTGCATCGTCGTCCTATTCGTCTTCATCATCATC
AGGCGAGAGGAGTTCGTGTTCTCCAGGTATTCGTGTTTCTTATGTGGTAA
AGCAAGAGGCTCGCGATCGGCTTCTCCGACACGGCCTTCGAAGGGCTCAA
GGCCATGTGTGAAAGAGATCCCCGGGACGTCGATGGCTAGTCGTCGCTGG
CTAATACTCGTCGCCGACCAATACTGGCCAGCGACGACTGGCCATCGACG
TCCCGGGGATCGCTTTCACAAGTGGCCTTGAGCGCTGCGAACGCCTCGTC
GGAGCAGCCGATCGCGAGCCTTTTGCTTTACTACACGAGCTTAGCACATA
GTTGGAGGACACGAACTCCTCTCCTCATGATAATGGTAAAGACGAGGTAG
AGTTGAACCACGGTGCAGACCACACGGAGGAAGCTGTACTGTGTACGCTC
TGCAAGCCTAAGGAGGCTACAGGGTGATAACGCGTTGGTTTGTTACCGCG
AACAATTGTTCGGAAGCTATACCTGGGATGCCGCTGTCTCTTTGTTCATC
TTGATACTGGTAGCGTTGTCGCCTGTTGCTGTTCTCGCTCCGTTGTTGTC
TGTATGACCGAGTTTGACTAGCGCTCGCGAGCCCTTGCTTTGTTACATGA
GAAGCACAAAGACCTGGAGGACACGAACTCCTCTCCTCATGACGATAGTA
AAGACGAAGTAGAGTTGAACAACGGTGCAGACCACACGAAGGAAGCTGTA
CTGTGCACGCTCTGCAAGCCTAAAAAGGCTACAGGGTAATAACACGTTGG
TTTGCTACCGCAACCAATTGTTTGGAAGCTACCTGGTGCCGCTGTCTCTA
TGTTTCTGTCGGTATTAATAAGCATGAAATATGTGTAGCATTGCCTGTTG
CATGTACGGTGGTAACCTTCTGCTTTCCCTTAACGTGTTGCCTGGTTCGA
CGGAACTTTTCGTTTCCGTTTCGAAGATCGCTAGGAAGAACGCCGATCTT
CGCGGGGCGGTCGACGCGTGGGATCAAGCGATGGCAGGGGTCAACCTTTT
CGTTGACCAACACAAAGACCTCGAGGACGTCGACTCTTCTCCTTCGGATG
ATGATGACGAGGATGACGAGGATGACGAAGAGGACGAAGAGGACGGAAAG
GACGAAGAGGACGAGGGTGCAGACAAGACTCCGACCGTACTGTGCACGCA
GTGCAAACCCAAAGAAGCTACGGGGTGAGCAAAACTTTTTTTGTCCTGTA
TATGGTACAGCAAACAATATTTTGGAAGTTATTCATGCCGCTGTCCCTTT
GTTTTTACTGATATCAGATACTACATAAAACGCTCAACACAAAATAGGTG
TAGCATTGCCGGAGCATATGCACAAAGTATGTAGCGTTGCCCGAGCTCTT
CGCCGTAATTGCCCCGTTGCGGATGGGGAAGCTACGGCAGGAGAAAAACC
TTTGCCTTTTTCTTGTTTGAACTTGGGCCTGTCGGAGAGGAGGGGAGGGG
TGTTTCATGGGCTTCTATTTTCCCCGCGTCTCAAAAGAATTTGATGATTT
GGATAGGAAAAACATCACGTACCTGCCCTAAGGCGATAAGGAAACCGTCT
CCCTGCGTGCAAATCTACGTTCGTACGTGTGTGCGTTTTTGGTTTGACCC
GTCGTAGTGGAGAGAGTGCGCGGCCGAGGTAAATCCAGCGGCAAACCGCC
GCTCGGGCACGAGAGAGAGTACTTGAAGCCAGCTCTGACAACTTTGTGTC
ACAAGCATGCAAAGAGTTGGCTGAGTTAGCCCTCGTTTAGGCGCTCGTTT
GCTTGTCGTAAAGTATGTACGTGTGCTCCAACCACACCTCCTACGGCCTA
TGCACCGAGACAAACACAAAGAGGGGACGGGAAACTAAGACTTGCGCACG
AATGGAAGTGCTGGCTGCTGAAAAAACTGGCGCCCACTTCTTTTGTCTGG
TTTTTTCGCACGCGAGCGCATAGACCGATTGAAAGACGGAACCCGAGAGG
GATGTAGGGGGGGAGAGAGAGTTTCAGAGGGCGAAAATAGCTGGCTGGAG
CGATCAGAGACGACTACTGGTTAAATTTTCGAGTGTCTCTAGTCGCTCTG
CAGGGTTAGAGCCTCGTCGTCGCTGAAACATTGTTTTGTTCTTTCGTCTT
TTGTTTTTAACGCTCCCACCGCCATATCATGCTAGACACTAGACTGCCAC
GCTACACAACCACCGCTTTATGAAGAAACAGCCTACTGCAGGACTGAATT
TTTCTTGCAACAAGAGCTCGTCTCCCCCAAAAATCTAGTTTTTCCTCACA
GAGACATTCCACCCCCCCCCTGCACGTGCTCAAGCAACAAAACTGCGTAC
TCTCGCTTACTGACCCCCGTTATCACGGGGCGGTGTACACCTATTTATTA
CCGATGCCCAGTGAGCGAGACTGGCTGAACAAGCTACAGGAGAGGAGGAG
CATTTGTTTTTTTTGCGCAGTTGTTTGTTTTCAATTCGCCATATAGAGTA
CCGGCCTTCTTCTGGGGCATGTGGTGGGAAGGGTGATGCATAAATATCAG
AAACATTTGTGTCCTGCCTCGGGGTAAATGTATGTGTTTTGCTGTTTCTG
CTCCCAACCAGTCAAGCTACGTCATTCAATTGTTCCCGCCTCACTGTGTT
CTACGACGTACCACTTTTGCCCCCTGCAACATGATACAGGTTCTGCTGCC
CGAGCTGTGGCATGCATCACCGTGCAAAGTGTGCTCATGTTGCGGAATCA
GACGACGA
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Coding sequence (CDS) from alignment at P-lacustris_contig952:26307..30964-

>mRNA_P-lacustris_contig952.15910.1 ID=mRNA_P-lacustris_contig952.15910.1|Name=mRNA_P-lacustris_contig952.15910.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1428bp|location=Sequence derived from alignment at P-lacustris_contig952:26307..30964- (Pleurocladia lacustris SAG_25_93)
AATCTCCTTGACTCTCCAATCGTGTTGACGGACTTGAAGGCGCATCCCCT
CGAGCAGACATTTATGATAAACATACTAGCCAGAATCTCCTTGACTCTCC
AATCGTGTTGACGGACTTGAAGGCGCATCCCCTCGAGCAGACATTTATGA
TAAACATACTAGCCAGGTACAAAAAGTTCAGCATGAAGGCCCCACACAAG
ACCGACCTTCCGAACCTGAAGGGGCGTGTGATGGAGGCGGGAATCCTCTA
CAGGAGGGTTGAGAATGTACTGCCGCGAAGCTCGTGGACACACGAATTTG
AGAAGTACAAAAAGTTCAGCATGAAGGCCCCACACAAGACCGACCTTCCG
AACCTGAAGGGGCGTGTGATGGAGGCGGGAATCCTCTACAGGAGGGTTGA
GAATGTACTGCCGCGAAGCTCGTGGACACACGAATTTGAGAAGTCGCTGT
TGGACCTGATACACGGCAAGCAAACCGAGTGGGACACATGGGGAGGTGGC
CACATGAAGGGGAGGGACAAGGAACTGCAAGACCTACAGGATCTTTTGCC
GTCGGGCAACAAGCTCCAGAAGGACCAGCAACGCACGGTCTTGAGCAAGC
TGCCTGTTCGTCTCGAAAAGGTCGCTGTTGGACCTGATACACGGCAAGCA
AACCGAGTGGGACACATGGGGAGGTGGCCACATGAAGGGGAGGGACAAGG
AACTGCAAGACCTACAGGATCTTTTGCCGTCGGGCAACAAGCTCCAGAAG
GACCAGCAACGCACGGTCTTGAGCAAGCTGCCTGTTCGTCTCGAAAAGAT
CGCTAGGAAGAACGCCGATCTTCGCGGGGCGGTCGACGCGTGGGATCAAG
CGATGGCAGGGGTCAACCTTTTCGTTGACCAACACAAAGACCTCGAGGAC
GTCGACTCTTCTCCTTCGGATGATGATGACGAGGATGACGAGGATGACGA
AGAGGACGAAGAGGACGGAAAGGACGAAGAGGACGAGGGTGCAGACAAGA
CTCCGACCGTACTGTGCACGCAGTGCAAACCCAAAGAAGCTACGGGATCG
CTAGGAAGAACGCCGATCTTCGCGGGGCGGTCGACGCGTGGGATCAAGCG
ATGGCAGGGGTCAACCTTTTCGTTGACCAACACAAAGACCTCGAGGACGT
CGACTCTTCTCCTTCGGATGATGATGACGAGGATGACGAGGATGACGAAG
AGGACGAAGAGGACGGAAAGGACGAAGAGGACGAGGGTGCAGACAAGACT
CCGACCGTACTGTGCACGCAGTGCAAACCCAAAGAAGCTACGGGGTTCTG
CTGCCCGAGCTGTGGCATGCATCACCGTGCAAAGTGTGCTCATGTTGCGG
AATCAGACGACGTTCTGCTGCCCGAGCTGTGGCATGCATCACCGTGCAAA
GTGTGCTCATGTTGCGGAATCAGACGAC
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