mRNA_P-lacustris_contig95.15890.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig95.15890.1
Unique NamemRNA_P-lacustris_contig95.15890.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig95.15890.1 vs. uniprot
Match: A0A6H5KR74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR74_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 3.690e-25
Identity = 46/76 (60.53%), Postives = 60/76 (78.95%), Query Frame = -1 
Query:    1 KF*PQGSDRVEVTVERVVGRKGQYLLVNRAFSKICQLEDGSDSAWPAKNFDGWKPDDNDKVRLFVLVYLLAGCDFL 228
            K  P G D+V+VTV+R+VG   ++L VNR ++KI  L+DGS+SAWPA +F GW P  ++KVRLFVL+YLLAGCDFL
Sbjct:   15 KIPPNGIDKVDVTVQRIVGGAAKFLWVNRVYNKIADLKDGSESAWPAADFQGWIPTADEKVRLFVLIYLLAGCDFL 90
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BLAST of mRNA_P-lacustris_contig95.15890.1 vs. uniprot
Match: A0A6H5JQD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD3_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.980e-24
Identity = 46/76 (60.53%), Postives = 60/76 (78.95%), Query Frame = -1 
Query:    1 KF*PQGSDRVEVTVERVVGRKGQYLLVNRAFSKICQLEDGSDSAWPAKNFDGWKPDDNDKVRLFVLVYLLAGCDFL 228
            K  P G D+V+VTV+R+VG   ++L VNR ++KI  L+DGS+SAWPA +F GW P  ++KVRLFVL+YLLAGCDFL
Sbjct:  250 KILPYGIDKVDVTVQRIVGGAAKFLWVNRVYNKIADLKDGSESAWPAADFQGWTPTADEKVRLFVLIYLLAGCDFL 325
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BLAST of mRNA_P-lacustris_contig95.15890.1 vs. uniprot
Match: A0A6H5JYK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYK0_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 7.910e-24
Identity = 43/73 (58.90%), Postives = 57/73 (78.08%), Query Frame = -1 
Query:    1 PQGSDRVEVTVERVVGRKGQYLLVNRAFSKICQLEDGSDSAWPAKNFDGWKPDDNDKVRLFVLVYLLAGCDFL 219
            P+G   V+VTV+RVVG + ++L +NR F+ IC+L+DGS+SAWP   F GW P DNDKVRLFVL +L +GCD+L
Sbjct:   14 PRGEGAVDVTVQRVVGGETKFLWMNRVFASICELQDGSESAWPPLTFRGWIPTDNDKVRLFVLTFLESGCDYL 86
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BLAST of mRNA_P-lacustris_contig95.15890.1 vs. uniprot
Match: A0A6H5KLM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLM2_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.640e-22
Identity = 41/73 (56.16%), Postives = 55/73 (75.34%), Query Frame = -1 
Query:    1 PQGSDRVEVTVERVVGRKGQYLLVNRAFSKICQLEDGSDSAWPAKNFDGWKPDDNDKVRLFVLVYLLAGCDFL 219
            P+G   V+VTV++VVG + ++  VNR F+ IC+L+DGS+SAWP   F GW P  NDKVRLFVL +L +GCD+L
Sbjct:   94 PRGEGAVDVTVQKVVGGETKFQWVNRVFTSICKLQDGSESAWPLLTFRGWIPTGNDKVRLFVLTFLESGCDYL 166
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BLAST of mRNA_P-lacustris_contig95.15890.1 vs. uniprot
Match: A0A6H5JME2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME2_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.680e-22
Identity = 43/73 (58.90%), Postives = 57/73 (78.08%), Query Frame = -1 
Query:    1 PQGSDRVEVTVERVVGRKGQYLLVNRAFSKICQLEDGSDSAWPAKNFDGWKPDDNDKVRLFVLVYLLAGCDFL 219
            P+G   V+VTV+RVVG + ++L +NR F+ IC+L+DGS+SAWP   F GW P DNDKVRLFVL +L +GCD+L
Sbjct:  511 PRGEGAVDVTVQRVVGGETKFLWMNRVFASICELQDGSESAWPPLTFRGWIPTDNDKVRLFVLTFLESGCDYL 583
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BLAST of mRNA_P-lacustris_contig95.15890.1 vs. uniprot
Match: A0A6H5L577_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L577_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 2.320e-22
Identity = 44/76 (57.89%), Postives = 58/76 (76.32%), Query Frame = -1 
Query:    1 KF*PQGSDRVEVTVERVVGRKGQYLLVNRAFSKICQLEDGSDSAWPAKNFDGWKPDDNDKVRLFVLVYLLAGCDFL 228
            K  P G D+V++TV+R+VG   ++L VNR ++KI  L+DGS+SAWPA +F GW P  ++KVRLFVL YLLAG DFL
Sbjct:  886 KIPPNGIDKVDITVQRIVGGAAKFLWVNRVYNKIADLKDGSESAWPAADFQGWIPTADEKVRLFVLTYLLAGSDFL 961
[Close]
BLAST of mRNA_P-lacustris_contig95.15890.1 vs. uniprot
Match: A0A6H5JAK2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAK2_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 4.060e-22
Identity = 42/73 (57.53%), Postives = 57/73 (78.08%), Query Frame = -1 
Query:    1 PQGSDRVEVTVERVVGRKGQYLLVNRAFSKICQLEDGSDSAWPAKNFDGWKPDDNDKVRLFVLVYLLAGCDFL 219
            P+G   V+VTV++VVG + ++L +NR F+ IC+L+DGS+SAWP   F GW P DNDKVRLFVL +L +GCD+L
Sbjct:  517 PRGEGAVDVTVQKVVGGETKFLWMNRVFASICELQDGSESAWPPLTFRGWIPTDNDKVRLFVLTFLESGCDYL 589
[Close]
BLAST of mRNA_P-lacustris_contig95.15890.1 vs. uniprot
Match: A0A6H5KTG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTG2_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 4.320e-22
Identity = 42/73 (57.53%), Postives = 57/73 (78.08%), Query Frame = -1 
Query:    1 PQGSDRVEVTVERVVGRKGQYLLVNRAFSKICQLEDGSDSAWPAKNFDGWKPDDNDKVRLFVLVYLLAGCDFL 219
            P+G   V+VTV++VVG + ++L +NR F+ IC+L+DGS+SAWP   F GW P DNDKVRLFVL +L +GCD+L
Sbjct:  606 PRGEGAVDVTVQKVVGGETKFLWMNRVFASICELQDGSESAWPPLTFRGWIPTDNDKVRLFVLTFLESGCDYL 678
[Close]
BLAST of mRNA_P-lacustris_contig95.15890.1 vs. uniprot
Match: A0A6H5L6D9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D9_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 4.440e-22
Identity = 42/73 (57.53%), Postives = 57/73 (78.08%), Query Frame = -1 
Query:    1 PQGSDRVEVTVERVVGRKGQYLLVNRAFSKICQLEDGSDSAWPAKNFDGWKPDDNDKVRLFVLVYLLAGCDFL 219
            P+G   V+VTV++VVG + ++L +NR F+ IC+L+DGS+SAWP   F GW P DNDKVRLFVL +L +GCD+L
Sbjct: 1625 PRGEGAVDVTVQKVVGGETKFLWMNRVFASICELQDGSESAWPPLTFRGWIPTDNDKVRLFVLTFLESGCDYL 1697
[Close]
BLAST of mRNA_P-lacustris_contig95.15890.1 vs. uniprot
Match: A0A6H5KI96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI96_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 4.450e-22
Identity = 40/73 (54.79%), Postives = 57/73 (78.08%), Query Frame = -1 
Query:    1 PQGSDRVEVTVERVVGRKGQYLLVNRAFSKICQLEDGSDSAWPAKNFDGWKPDDNDKVRLFVLVYLLAGCDFL 219
            P+G   ++VTV++V+G + ++L +NR F+ IC+L+DGS+SAWP   F GW P DNDKVRLFVL +L +GCD+L
Sbjct:   85 PRGEGAIDVTVQKVLGGETKFLWMNRVFASICELQDGSESAWPLLTFRGWIPTDNDKVRLFVLTFLESGCDYL 157
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig95.15890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KR74_9PHAE3.690e-2560.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQD3_9PHAE1.980e-2460.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYK0_9PHAE7.910e-2458.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLM2_9PHAE1.640e-2256.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JME2_9PHAE1.680e-2258.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L577_9PHAE2.320e-2257.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAK2_9PHAE4.060e-2257.53Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KTG2_9PHAE4.320e-2257.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6D9_9PHAE4.440e-2257.53Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KI96_9PHAE4.450e-2254.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig95contigP-lacustris_contig95:254974..255309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size338
Cds size336
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817377.323636-CDS-P-lacustris_contig95:254973..2553091622817377.323636-CDS-P-lacustris_contig95:254973..255309Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig95 254974..255309 +
1693495019.3599086-CDS-P-lacustris_contig95:254973..2553091693495019.3599086-CDS-P-lacustris_contig95:254973..255309Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig95 254974..255309 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig95.15890.1prot_P-lacustris_contig95.15890.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig95 254974..255309 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig95.15890.1

>prot_P-lacustris_contig95.15890.1 ID=prot_P-lacustris_contig95.15890.1|Name=mRNA_P-lacustris_contig95.15890.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=112bp
EEVAAREKVNENEQTDLVVVVGFPAVEIFRRPCRVAPVLELAYLAKCSVH
QEVLPLPTHHPLHGDFHSIRALRLEFFRRSSREGGSSFDLCRLMTRATCR
SFSPSTCSRSQ*
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mRNA from alignment at P-lacustris_contig95:254974..255309+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig95.15890.1 ID=mRNA_P-lacustris_contig95.15890.1|Name=mRNA_P-lacustris_contig95.15890.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=336bp|location=Sequence derived from alignment at P-lacustris_contig95:254974..255309+ (Pleurocladia lacustris SAG_25_93)
GAGGAAGTCGCAGCCCGCGAGAAGGTAAACGAGAACGAACAGACGGACCT
TGTCGTTGTCGTCGGGTTTCCAGCCGTCGAAATTTTTCGCCGGCCATGCA
GAGTCGCTCCCGTCCTCGAGCTGGCATATCTTGCTAAATGCTCGGTTCAC
CAAGAGGTACTGCCCCTTCCTACCCACCACCCTCTCCACGGTGACTTCCA
CTCTATCCGAGCCCTGAGGTTAGAATTTTTCCGGCGCTCATCGCGAGAAG
GAGGATCATCCTTTGATCTGTGTCGACTGATGACACGAGCCACCTGTCGA
AGCTTTTCCCCCAGTACTTGTTCGCGTTCACAATAA
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Coding sequence (CDS) from alignment at P-lacustris_contig95:254974..255309+

>mRNA_P-lacustris_contig95.15890.1 ID=mRNA_P-lacustris_contig95.15890.1|Name=mRNA_P-lacustris_contig95.15890.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=672bp|location=Sequence derived from alignment at P-lacustris_contig95:254974..255309+ (Pleurocladia lacustris SAG_25_93)
GAGGAAGTCGCAGCCCGCGAGAAGGTAAACGAGAACGAACAGACGGACCT
TGTCGTTGTCGTCGGGTTTCCAGCCGTCGAAATTTTTCGCCGGCCATGCA
GAGTCGCTCCCGTCCTCGAGCTGGCATATCTTGCTAAATGCTCGGTTCAC
CAAGAGGTACTGCCCCTTCCTACCCACCACCCTCTCCACGGTGACTTCCA
CTCTATCCGAGCCCTGAGGTTAGAATTTTTCCGGCGCTCATCGCGAGAAG
GAGGATCATCCTTTGATCTGTGTCGACTGATGACACGAGCCACCTGTCGA
AGCTTTTCCCCCAGTACTTGTTCGCGTTCACAATAAGAGGAAGTCGCAGC
CCGCGAGAAGGTAAACGAGAACGAACAGACGGACCTTGTCGTTGTCGTCG
GGTTTCCAGCCGTCGAAATTTTTCGCCGGCCATGCAGAGTCGCTCCCGTC
CTCGAGCTGGCATATCTTGCTAAATGCTCGGTTCACCAAGAGGTACTGCC
CCTTCCTACCCACCACCCTCTCCACGGTGACTTCCACTCTATCCGAGCCC
TGAGGTTAGAATTTTTCCGGCGCTCATCGCGAGAAGGAGGATCATCCTTT
GATCTGTGTCGACTGATGACACGAGCCACCTGTCGAAGCTTTTCCCCCAG
TACTTGTTCGCGTTCACAATAA
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