mRNA_P-lacustris_contig948.15859.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig948.15859.1
Unique NamemRNA_P-lacustris_contig948.15859.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
BLAST of mRNA_P-lacustris_contig948.15859.1 vs. uniprot
Match: A0A6H5LI82_9PHAE (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LI82_9PHAE)

HSP 1 Score: 400 bits (1029), Expect = 2.140e-131
Identity = 186/288 (64.58%), Postives = 226/288 (78.47%), Query Frame = 1
Query:  187 KNLPTLSPNATCADWAAWVPPRSDPAVVMQVVSKDYLDVQLNFIRFMELNSSFTRDHLYIMCMDEESLEYMSSSMGIRCLPLSGFDFPSHAQIWILRVKVVSCLVEAGQDVLMSDADALWLGDPAKDFANPRIVGSSIVASRGSFPSQLGSKWGSTICMGFALFRGRDTHAMQKFLTIMSELVHVLMDDQKSVNMAADDLGIVWDQGSDMRYERSTDIGWGTIDSLVDEDGRPFIVTLLPHVAYTRRCDKTPISNTTVVAHCYADKTSSAKTEWMQDAHLWFVGEENR 1050
            + LP ++P ATCADW  W+PPRSDPA+VMQVVS+ YL+++ NFIR MELNS+ TRDHLY+MCMD  S+ +  SSM IRC+PL+ FDFPSHA+IW+LR +VVSCLVEAGQDV+MSDADALWL DP KDF  PR++ SS+VASRG FP  LG +WG+T+CMGF LFR      + +FL +M  LVH   DDQ SVN+AA++LGIVWDQ SDMRY  S   G+GTID+LVDE+ +PF VTLLPH AYTR CD+TPISN TVVAHC+A KT+ +KT WM  + LWF   E R
Sbjct:   33 RRLPAITPKATCADWMKWIPPRSDPAIVMQVVSRHYLELERNFIRLMELNSALTRDHLYLMCMDNVSVHFFESSMNIRCIPLTAFDFPSHAEIWVLRARVVSCLVEAGQDVIMSDADALWLDDPFKDFNLPRVIDSSVVASRGKFPKPLGLEWGATMCMGFVLFRATGRRVVGEFLEVMDALVHKNKDDQISVNLAAENLGIVWDQESDMRYVESDSFGFGTIDTLVDENNQPFSVTLLPHNAYTRVCDETPISNKTVVAHCWAPKTADSKTGWMVQSKLWFSDNETR 320          
BLAST of mRNA_P-lacustris_contig948.15859.1 vs. uniprot
Match: D8LK17_ECTSI (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK17_ECTSI)

HSP 1 Score: 314 bits (805), Expect = 1.250e-97
Identity = 167/326 (51.23%), Postives = 210/326 (64.42%), Query Frame = 1
Query:  154 TAAVSVMVSPMKNLPTLSPNATCADWAAWVPPRSDPAVVMQVVSKDYLDVQLNFIRFMELNSSFTRDHLYIMCMDEESLEYMSSSMGIRCLPLSGFDFPSHAQIWILRVKVVSCLVEAGQ-DVLMSDADALWLGDPAKDFANPRIVG-SSIVASRGSFPSQLGSKWGSTICMGFALFRGRDTHAMQKFLTIMSELVHVLMDDQKSVNMAADDLGIVWDQGSDMRYERSTDIGWGTI---------------DSLVDEDGR-------------PFIVTLLPHVAYTRRCDKTPISN-TTVVAHCY-ADKTSSAKTEWMQDAHLWFV 1035
            T  +   +  ++ LP ++ +ATC DWAAW+PPRS PAVVMQVVS+ Y+D++ NFIR ME NS FTR ++Y+MCMD+ S  +  + MGIRC+P+S  D P+H  IW LRV+VVSCL+E G  DV+MSDADALWL DPAKD  +    G   IVASRGS+P+    +WGST+CMGF LFR R+   M++FL +M++LV    DDQ SVN AA  LGIVWD+ SDMRYE ST  G G I               D  + + G              PF VTLLPH AYTR C +  +SN TTVVAHCY   K +  KT WM+ A+LW V
Sbjct:   14 TELIDPEIYDLETLPAITKDATCVDWAAWIPPRSRPAVVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGIRCVPMSALDLPTHEHIWQLRVRVVSCLLEIGNVDVIMSDADALWLADPAKDLFSRGDGGRGDIVASRGSWPNDQWKEWGSTLCMGFILFRARNVAGMKRFLDVMADLVVQNKDDQISVNRAAKQLGIVWDKNSDMRYEESTGYGRGIIAGLGTSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTRLCGRRTLSNQTTVVAHCYFPQKEAGVKTSWMKKANLWSV 339          
BLAST of mRNA_P-lacustris_contig948.15859.1 vs. uniprot
Match: A0A6H5KMQ8_9PHAE (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ8_9PHAE)

HSP 1 Score: 285 bits (728), Expect = 3.490e-86
Identity = 142/286 (49.65%), Postives = 195/286 (68.18%), Query Frame = 1
Query:  193 LPTLSPNATCADWAAWVPPRSDPAVVMQVVSKDYLDVQLNFIRFMELNSSFTRDHLYIMCMDEESLEYMSSSMGIRCLPLSGFDFP-SHAQIWILRVKVVSCLVEAGQDVLMSDADALWLGDPAKDFANPRIVGSSIVASRGSFPSQLGSKWGSTICMGFALFRGRDTHAMQKFLTIMSELVHVLMDDQKSVNMAADDLGIVWDQGSDMRYERSTDIGWGTIDSLVDEDGRPFIVTLLPHVAYTRRCDKTPISNTTVVAHCYADKTSSAKTEWMQDAHLWFVGEEN 1047
            LP ++ +++C+D  AW+PPRS PAVV QVVS+ Y  ++ NFI  MEL+S+F+R++LY++C+DEES+      +GIRC+       P S   +W+LRV+   CL+ AGQDVLMSDADA+WL DP  DFA+   + S++VASR   P  L  KWG+T+CMGFA FR   + AMQ F+T++ E+V+ L DDQK+VN A D LG+VWD  SDM +  ST  G G I+++   +G P  VTLLPH  YTR C +TPISN T+VAHC +         WM++AHLW + ++N
Sbjct:   61 LPPITKDSSCSDMLAWLPPRSSPAVVFQVVSEPYASLEANFISNMELHSTFSRENLYLVCLDEESVAIFDG-LGIRCVRYGCLGCPMSRLDVWVLRVEATLCLLNAGQDVLMSDADAIWLRDPTNDFASDLNMDSNVVASRAVMPFPLYHKWGATVCMGFAFFRAGGS-AMQAFMTVVGEIVNELGDDQKAVNEALDKLGVVWDPTSDMDFTNSTRPGTGVIENIT-ANGDPLKVTLLPHNKYTRSCRRTPISNDTIVAHCVSSDKGEGMATWMKEAHLWNLPDDN 343          
BLAST of mRNA_P-lacustris_contig948.15859.1 vs. uniprot
Match: D7FGV6_ECTSI (Acetyltransferase (Isoleucine patch superfamily protein) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV6_ECTSI)

HSP 1 Score: 270 bits (690), Expect = 1.270e-79
Identity = 137/286 (47.90%), Postives = 190/286 (66.43%), Query Frame = 1
Query:  193 LPTLSPNATCADWAAWVPPRSDPAVVMQVVSKDYLDVQLNFIRFMELNSSFTRDHLYIMCMDEESLEYMSSSMGIRCLPLSGFDFP-SHAQIWILRVKVVSCLVEAGQDVLMSDADALWLGDPAKDFANPRIVGSSIVASRGSFPSQLGSKWGSTICMGFALFRGRDTHAMQKFLTIMSELVHVLMDDQKSVNMAADDLGIVWDQGSDMRYERSTDIGWGTIDSLVDEDGRPFIVTLLPHVAYTRRCDKTPISNTTVVAHCYADKTSSAKTEWMQDAHLWFVGEEN 1047
            LP ++ +++C+D  AW+PPRS PAVV QVVS+ Y  ++ NFI  MEL+S+F+R++LY++C+DEES+      +GIRC+       P S   IW+LR+ V  CL+ AGQDVLMSDADA+WL DP  D A+   + S++VASR   P  L  KWG+TICMGFA FR   + AMQ F+T++ E+ + L +DQ +VN A + L +VWD  SDM +  +T  G G I+++   DG    VTLLPH  YTR C +TPISN T+VAHC +         WM++AHLW + ++N
Sbjct:  136 LPPITKDSSCSDMLAWLPPRSSPAVVFQVVSEPYASLEENFISNMELHSTFSRENLYLVCLDEESVAIFDG-LGIRCVRYGCLGCPVSRGDIWVLRIDVTICLLNAGQDVLMSDADAIWLRDPTDDLASDAFLDSNVVASRAVMPFPLYHKWGATICMGFAFFRAGGS-AMQAFMTVVEEIANELGNDQIAVNEALNKLDVVWDPMSDMNFTDNTRPGTGVIENIT-VDGGSLKVTLLPHNKYTRSCRRTPISNDTIVAHCVSSDKGEGMATWMKEAHLWNLPDDN 418          
BLAST of mRNA_P-lacustris_contig948.15859.1 vs. uniprot
Match: D8LSV3_ECTSI (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSV3_ECTSI)

HSP 1 Score: 261 bits (667), Expect = 1.610e-76
Identity = 136/283 (48.06%), Postives = 187/283 (66.08%), Query Frame = 1
Query:  202 LSPNATCADWAAWVPPRSDPAVVMQVVSKDYLDVQLNFIRFMELNSSFTRDHLYIMCMDEESLEYMSSSMGIRCLPLSGFDFP-SHAQIWILRVKVVSCLVEAGQDVLMSDADALWLGDPAKDFANPRIVGSSIVASRGSFPSQLGSKWGSTICMGFALFRGRDTHAMQKFLTIMSELVHVLMDDQKSVNMAADDLGIVWDQGSDMRYERSTDIGWGTIDSLVDEDGRPFIVTLLPHVAYTRRCDKTPISNTTVVAHCYADKTSSAKTEWMQDAHLWFVGEEN 1047
            +S +A+CAD  AW+PP+  PAVV QVVSK Y+ VQ NFI  MEL+S+F+R+++Y++C+DEES+E   + +GIRC+       P S   +W LR++V  CL++AG DVLMSDADA+WL DP  DF +     SSIVASRG+ P  L   WG+TICMGF LFR   ++A+ +F+ ++ E    L +DQ++VN+A   L +VWD  SDM +  ST  G G ++S+    G    V+LLPH  YTR C +TPIS  TVVAHC +         WM++AHLW V ++N
Sbjct:  122 ISRHASCADIVAWLPPQLQPAVVFQVVSKAYVSVQKNFISNMELHSTFSRENMYLICLDEESVESFGA-LGIRCVRFGCMGCPVSRHHVWALRIEVSVCLLKAGIDVLMSDADAVWLHDPMDDFDSDDYRDSSIVASRGAMPVPLFRTWGATICMGFVLFRA-GSNAIYQFMEVVGEFTEELENDQQAVNLALQKLDVVWDPTSDMSFSDSTRSGVGVVNSIYS--GESLTVSLLPHNKYTRSCRRTPISVETVVAHCISTDKGEGMATWMKEAHLWNVPDDN 400          
BLAST of mRNA_P-lacustris_contig948.15859.1 vs. uniprot
Match: D7G4E2_ECTSI (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E2_ECTSI)

HSP 1 Score: 244 bits (622), Expect = 5.070e-72
Identity = 141/302 (46.69%), Postives = 168/302 (55.63%), Query Frame = 1
Query:  151 TTAAVSVMVSPMKNLPTLSPNATCADWAAWVPPRSDPAVVMQVVSKDYLDVQLNFIRFMELNSSFTRDHLYIMCMDEESLEYMSSSMGIRCLPLSGFDFPSHAQIWILRVKVVSCLVEAGQDVLMSDADALWLGDPAKDFANPRIVGSSIVASRGSFPSQLGSKWGSTICMGFALFRGRDTH-AMQKFLTIMSELVHVLMDDQKSVNMAADDLGIVWDQ-GSDMRYERSTDIGWGTIDSLVDEDGRPFIVTLLPHVAYTRRCDKTPISNTTVVAHCYADKTSSAKTEWMQDAHLWFVGEENR 1050
            T   VS+ + P++ LP +SP A CADWAAWVPP S P VVMQV                                                                          EAG DV+MSDADALWL DP KDF+ P +VGSSIVASRGSFP ++G  WG+TICMGF LFR   +  AM++F+T+M+ LV    DDQ +VN+AA DLGIVW+Q  SDMRY  ST  G G IDSL D+D +PF VTLLPH AYTR C  TP+SNTTVVAHC + KT  +K +WM    LW V E+ R
Sbjct:   22 TAKNVSLDLLPLEPLPAISPEAVCADWAAWVPPMSGPTVVMQV--------------------------------------------------------------------------EAGHDVMMSDADALWLADPMKDFSLPGVVGSSIVASRGSFPGEVGHVWGATICMGFILFRTTASRVAMREFVTVMNALVLEEKDDQIAVNIAARDLGIVWNQEDSDMRYTESTGFGVGFIDSLSDDDNQPFTVTLLPHSAYTRICASTPVSNTTVVAHCISSKTPQSKADWMHRMDLWAVDEDTR 249          
BLAST of mRNA_P-lacustris_contig948.15859.1 vs. uniprot
Match: A0A6H5JTX9_9PHAE (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX9_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 6.790e-55
Identity = 112/255 (43.92%), Postives = 143/255 (56.08%), Query Frame = 1
Query:  265 VVMQVVSKDYLDVQLNFIRFMELNSSFTRDHLYIMCMDEESLEYMSSSMGIRCLPLSGFDFPSHAQIWILRVKVVSCLVEAGQ-DVLMSDADALWLGDPAKDFANPRIVG-SSIVASRGSFPSQLGSKWGSTICMGFALFRGRDTHAMQKFLTIMSELVHVLMDDQK-----------------------------------------------------SVNMAADDLGIVWDQGSDMRYERSTDIGWGTIDSL 864
            + + VVS+ Y+D++ NFIR ME NS FTR ++Y+MCMD  S  +  + MGIRC+P+S  D P+H  IW LRVKVVSCL+E G  DV+MSDADALWL DPAKD  +    G   I+ASRGS+P++   +WGST+CMGF +FR R+   M++FL +M++LV    DDQ                                                      SVN AA  LGIVWD+ SDMRYE ST  G G I  L
Sbjct:    1 MTVPVVSEGYIDIERNFIRLMERNSGFTRSNIYLMCMDGASKNFFDAKMGIRCVPMSALDLPTHQDIWQLRVKVVSCLLEVGHVDVIMSDADALWLADPAKDLFSRGGGGRGDIIASRGSWPNEQSKEWGSTLCMGFIVFRARNVAGMKRFLDVMADLVVQNKDDQMLCECATGVENDFCGFPASSRPRSNPTLTESAFCVAAPSPNASLILSIVSVEKISVNRAAKQLGIVWDKNSDMRYEESTGYGRGVIAGL 255          
BLAST of mRNA_P-lacustris_contig948.15859.1 vs. uniprot
Match: D7FQM0_ECTSI (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM0_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 5.990e-53
Identity = 90/150 (60.00%), Postives = 113/150 (75.33%), Query Frame = 1
Query:  325 MELNSSFTRDHLYIMCMDEESLEYMSSSMGIRCLPLSGFDFPSHAQIWILRVKVVSCLVEAGQDVLMSDADALWLGDPAKDFANPRIVGSSIVASRGSFPSQLGSKWGSTICMGFALFRGRDTH-AMQKFLTIMSELVHVLMDDQKSVNM 771
            MEL +SFTR+HLY+MC+D++SL +  S MGI C+PLSG +  SH QIW+LRV+VVSCL EAG DV+MSDADALWL DP KDF+ P ++ SSIVASRG  P ++G  WG+T+CMGF LFR      AM KF+T+M+ LV    DDQ +V M
Sbjct:    1 MELRTSFTRNHLYLMCLDDDSLHFFESFMGIHCIPLSGLNISSHEQIWVLRVRVVSCLAEAGHDVIMSDADALWLADPMKDFSLPGVIDSSIVASRGKKPKEVGKVWGATMCMGFILFRATANRTAMGKFVTVMNALVFESEDDQIAVCM 150          
BLAST of mRNA_P-lacustris_contig948.15859.1 vs. uniprot
Match: A0A8J6CCA2_DIALT (Nucleotid_trans domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CCA2_DIALT)

HSP 1 Score: 114 bits (285), Expect = 5.220e-24
Identity = 90/283 (31.80%), Postives = 139/283 (49.12%), Query Frame = 1
Query:  217 TCADWAAWVPPRSD---PAVVMQVVSKDYLDVQLNFIRFMELNSSFTRDHLYIMCMDEESLEYMSSSMGIRCLPLSGFDFPSHAQIWILRVKVVSCLVEAGQDVLMSDADALWLGDPAKDFANPRIVGSSIVASRGSFPSQLGSKWGSTICMGFALFRGRDTHAMQKFLTIMSELVHVLMDDQKSVNMAADDLGIVWDQGSDMRYERSTDIGWGTIDSLVDEDGRPFI-VTLLPHVAYTRRCDKTPISNTTVVAHCYA-DKTSSAKTEWMQDAHLWFVGEENR 1050
            T A  A+ VPP      P VVM V++  Y  V  NFIR    +     +  +I+C D  +   ++  +G RC         S AQ++  R+  V+ LV  G+DVL++D DA+WLGDP  D    +   + I+ SRG  P      WG+++CMGF  FRG D          M  L   + +DQ   N       +VWD+G  +R+  S D  +GT+       G   + V +LPH +Y R C+     +T ++AHC++  K +  K + +   +LW++ E+ R
Sbjct:   32 TGAPVASLVPPVPGVPRPVVVM-VLNSAYTRVFENFIRAPGAHHLAAWE-THIICTDRATAVSLAK-LGWRCQDTVKTG-RSAAQVYTRRIPYVAHLVHLGRDVLITDVDAIWLGDPLPDIMATQ---AGIIGSRGRSPHL---DWGASLCMGFIFFRGSDPLVR----AAMPVLTEPMREDQTDFNHNMQRERLVWDEGR-VRFVDSIDTSFGTLRPKNANAGHAGLRVAMLPHKSYVRICEDKVDYSTVIIAHCHSRGKRAHLKVQSLGAKNLWYIPEKGR 299          
BLAST of mRNA_P-lacustris_contig948.15859.1 vs. uniprot
Match: A0A482S212_9ARCH (Nucleotid_trans domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S212_9ARCH)

HSP 1 Score: 85.5 bits (210), Expect = 5.680e-14
Identity = 63/243 (25.93%), Postives = 102/243 (41.98%), Query Frame = 1
Query:  463 IWILRVKVVSCLVEAGQDVLMSDADALWLGDPAKDFANPRIVGSSIVASRGSFPSQLGSKWGSTICMGFALFRG---------------RDTHAM----QKFL--------------------TIMSELVHVLMDDQKSVNMAADDLGIVWDQGSDMRYERSTDIGWGTIDSLVDEDGRPFIVTLLPHVAYTRRC---DKTPIS--------------------NTTVVAHCYADKTSSAKTE 1005
            IW+ R+++VS L++ G+DVL+SD DA+WL +P  D ++    GSSI++SR ++P ++   WG ++CMGF   +                + T+AM    +KFL                     + + +     DDQ S N+    L I WD+    +  +  +        ++  +G    VT+LP   + R C   D  P S                    +   VAHC    T + K E
Sbjct:    5 IWMKRLEIVSVLLQRGEDVLLSDLDAIWLQNPYADISSHLQAGSSIISSRATYPEEISRVWGRSLCMGFLYLKSDNFTNYLLPLVLADMQSTYAMFNLYEKFLRTGNLVYLDTKKNTTMVFDRAVFTSMSKKAPDDQHSFNIVLYKLNITWDR----QMRKHVNASQSYSGRIMGMNGSVNYVTMLPEQTFLRSCVDIDHLPASMRYFKLYPTVELRERIYHKVSAATVAHCLISTTEAKKKE 243          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig948.15859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5LI82_9PHAE2.140e-13164.58Nucleotid_trans domain-containing protein n=2 Tax=... [more]
D8LK17_ECTSI1.250e-9751.23Nucleotid_trans domain-containing protein n=1 Tax=... [more]
A0A6H5KMQ8_9PHAE3.490e-8649.65Nucleotid_trans domain-containing protein n=2 Tax=... [more]
D7FGV6_ECTSI1.270e-7947.90Acetyltransferase (Isoleucine patch superfamily pr... [more]
D8LSV3_ECTSI1.610e-7648.06Nucleotid_trans domain-containing protein n=2 Tax=... [more]
D7G4E2_ECTSI5.070e-7246.69Nucleotid_trans domain-containing protein n=2 Tax=... [more]
A0A6H5JTX9_9PHAE6.790e-5543.92Nucleotid_trans domain-containing protein n=1 Tax=... [more]
D7FQM0_ECTSI5.990e-5360.00Nucleotid_trans domain-containing protein n=1 Tax=... [more]
A0A8J6CCA2_DIALT5.220e-2431.80Nucleotid_trans domain-containing protein n=1 Tax=... [more]
A0A482S212_9ARCH5.680e-1425.93Nucleotid_trans domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig948contigP-lacustris_contig948:34046..38284 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score401.0
Seed ortholog evalue5.2e-109
Seed eggNOG ortholog2880.D8LSV4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Nucleotide-diphospho-sugar transferase
EggNOG OGs2C6NG@1,2SGR5@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size2190
Cds size936
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig948.15859.1prot_P-lacustris_contig948.15859.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig948 35129..38113 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817376.1707098-UTR-P-lacustris_contig948:34045..351281622817376.1707098-UTR-P-lacustris_contig948:34045..35128Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig948 34046..35128 -
1693495018.430997-UTR-P-lacustris_contig948:34045..351281693495018.430997-UTR-P-lacustris_contig948:34045..35128Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig948 34046..35128 -
1622817376.2329156-UTR-P-lacustris_contig948:38113..382841622817376.2329156-UTR-P-lacustris_contig948:38113..38284Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig948 38114..38284 -
1693495018.4799588-UTR-P-lacustris_contig948:38113..382841693495018.4799588-UTR-P-lacustris_contig948:38113..38284Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig948 38114..38284 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817376.1828024-CDS-P-lacustris_contig948:35128..354731622817376.1828024-CDS-P-lacustris_contig948:35128..35473Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig948 35129..35473 -
1693495018.4420521-CDS-P-lacustris_contig948:35128..354731693495018.4420521-CDS-P-lacustris_contig948:35128..35473Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig948 35129..35473 -
1622817376.1951087-CDS-P-lacustris_contig948:36195..364591622817376.1951087-CDS-P-lacustris_contig948:36195..36459Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig948 36196..36459 -
1693495018.4509542-CDS-P-lacustris_contig948:36195..364591693495018.4509542-CDS-P-lacustris_contig948:36195..36459Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig948 36196..36459 -
1622817376.2060094-CDS-P-lacustris_contig948:37471..376931622817376.2060094-CDS-P-lacustris_contig948:37471..37693Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig948 37472..37693 -
1693495018.4604201-CDS-P-lacustris_contig948:37471..376931693495018.4604201-CDS-P-lacustris_contig948:37471..37693Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig948 37472..37693 -
1622817376.2193837-CDS-P-lacustris_contig948:38008..381131622817376.2193837-CDS-P-lacustris_contig948:38008..38113Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig948 38009..38113 -
1693495018.4700012-CDS-P-lacustris_contig948:38008..381131693495018.4700012-CDS-P-lacustris_contig948:38008..38113Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig948 38009..38113 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig948.15859.1

>prot_P-lacustris_contig948.15859.1 ID=prot_P-lacustris_contig948.15859.1|Name=mRNA_P-lacustris_contig948.15859.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=312bp
MVSPMKNLPTLSPNATCADWAAWVPPRSDPAVVMQVVSKDYLDVQLNFIR
FMELNSSFTRDHLYIMCMDEESLEYMSSSMGIRCLPLSGFDFPSHAQIWI
LRVKVVSCLVEAGQDVLMSDADALWLGDPAKDFANPRIVGSSIVASRGSF
PSQLGSKWGSTICMGFALFRGRDTHAMQKFLTIMSELVHVLMDDQKSVNM
AADDLGIVWDQGSDMRYERSTDIGWGTIDSLVDEDGRPFIVTLLPHVAYT
RRCDKTPISNTTVVAHCYADKTSSAKTEWMQDAHLWFVGEENRTLENSRE
VRSEVSGDGPT*
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mRNA from alignment at P-lacustris_contig948:34046..38284-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig948.15859.1 ID=mRNA_P-lacustris_contig948.15859.1|Name=mRNA_P-lacustris_contig948.15859.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=4239bp|location=Sequence derived from alignment at P-lacustris_contig948:34046..38284- (Pleurocladia lacustris SAG_25_93)
TGCTTACAGCATCGCCCGCTTCTACTTATTCCGGGCCGAGAAGATGAGAA GACGGGAGGCGGGTACGCAGCAACGACGACCTCGGCGTCGCCGCTCCATG TCACCCTTCATCAACTGCTGCTTTGTAGCGGCCATGGTAGGCTTCCACCC ACGACAGCGGCAGTATCTGTCATGGTCTCGCCCATGAAGAACTTGCCGAC CTTGTCACCAAACGCAACGTGCGCCGACTGGGCGGCGTGGGTTCCTCCTC GTTCAGATCCCGCCGTGGTGATGCAGGTATCATATGATGATCTATCTCTG CACCGGATCTTCGCAGATACCTAGGAGCATTTTCGGACACGCAAAATAAA CAACCTCGAGTCAGACGCTAGTGCGCTGAACCCGGTAAAATCTCCCGGTT AGTTCGGATGGGATTGCCTGATTTTTATTGTTTTTGCCGAAAATGACGAA GAAAGAGACACTGTTGTGTGCAACATCACGTAATATGTCGTATCCTTCAA CTCACGCACGCGCGTCGCTGTTGCAGCATGGCACGAGCGAGATGATGAGA AGGGTTGTGCCTGATGCTCTTTTCTTCTGCACCAATTTCAGGTGGTGAGC AAGGACTACTTGGACGTGCAGCTAAACTTTATTCGATTCATGGAGCTCAA CTCGTCGTTCACGCGTGACCACCTCTACATCATGTGCATGGATGAAGAAT CTCTGGAGTACATGAGTTCGTCCATGGGGATCCGTTGCCTCCCTCTCAGC GGATTCGACTTCCCGTCGCATGCGCAGATCTGGATTTTGAGGGTGAAAGT GGTCTCTTGCCTGGTGAGCCTGAATGCTGAGGGCTGCAGGGAGGGGGGAT TACTACACGATATACCAACTAAATTTATGGCGAGCCGCAGAAAAGCTTTT TATGTGCCACACATGGTTATTGTTGATGCTGTTGTTGCTTTGTTGTTTCT TCAAGGAAAGCTTAGTTTGGTATCGTAGACGGAATAAACAATTTTTTGCT TGAGTAAAAGTTAGTTGTCGTTACGGTATAGAATTCGAAAACCCATAAAC AATGTAGTTAACACGCACCAACCGGACCTAGGCAGGGGAGAACACGCTGC AGTAGGTGGCGTTAGAGAGCATGAGATACGGCTACGGACTATGCAACGCA TGTCGGAGGATCGAGGCATTGATCGGCACTTGTGGTCCCGAAGTCGCGTC TTTCTCACCAATCCACCTCGTCGAAGTGGAACGATTTCTAGCTATCGTGT TGTGGTATGAATAGTCAAGTCGAGCACCATTTGGGGACTACGCGACCCCC CTGCGTATGCACTAAGCTACGGTTTGCGCGGCCGGTAGAAAACATGGGAG TTTTTTTTCATTTTTTGGCGGAGAAAGAGGGAGCCGGTACTGTGTGAGAA CCGGATGCGAGACCCCCGCGTGTCCGACGGTGTCTCTCTCCCCCCCGGTG CTGCTCTGTGTAGAACCAGATGACAGTAAACACCCAATTCCGAACGGTTC TGACCGAGATGAGGAACGCCATAAAATATACGAGTACTCCTTATTATTCA ACACATCGCCGACAAGATAAAGCCTCGTGTGCATGTGACATCTTCCCGGT TGCGGTCTTGTTGCGAACATCCAATACCTTCCGACGAAGCCGCGAATGGC ACACTAGGAGGAGAGAGGGCGGAAAATGTTTCAGGGAGAATGAGGATCTC GTGGTTGATCGTGCAGCAAAGCCTAATGGCAGCAATGATTTGGCCTGGAG GATAAATGTGGCCGCTGATCCTCACGTGTTGGAATGTATGCCTTCTTTCT TGCACCTGTTTACCGATACCTCGAGGTGGAAGCTGGACAAGATGTGCTCA TGTCGGATGCAGATGCTCTGTGGCTGGGCGATCCCGCGAAGGATTTTGCG AATCCCAGGATAGTGGGCAGCAGCATTGTGGCATCTAGGGGGAGTTTTCC ATCACAACTTGGGAGCAAGTGGGGTTCAACAATCTGCATGGGGTTCGCTC TTTTCCGAGGGAGGGACACGCACGCCATGCAAAAGTTCTTAACCATCATG AGCGAGCTGGTACACGTCCTTATGGATGACCAAAAATCGGTATGTGTATG ATCAGGAAAAACACTTAAGAGGCGTACATGTGTCGACCTACTGTAGTAGA TCACAAACCTTGAATGTCTCCATCTCCAAGGCCGAGTGTACCCTACGCAT CGTATAACTCAGTAATTGGAAGATATTCTGAAGCCCCTTTAGGGGTTTTA GTTTCTGATACGGCTAAAAAAAAGTCCGAAGAATCTTGATTCCACTTTTC TGATTCCACTTTTTTTTTCCAGTCTATTTTTTTCTCTCCACAGGCCACCA ACGGCCACCCCCTCGCGGCTATGCCTCCGCGAGCACACAGAAACCATGCA CGCGGAGTACGATCTCTCCAATCGCCAATCTCAATTATATCCTCTCGAGC GCCTACGCCGACACTACAACAAAAGGATCCAACCACACATACACATACAT GCGAAAATAAATGCAGACCATCTTTTCGCTTTATGCATCCCCATCTGCCT CGCACACTCGTCGTTGCCGCCCCCGAAAATGGCCGTCACTTAACGGTGCT GTTCGCATGCATACGTACTATACGTGACATGCGCACCCCACTGCGGCGGG GTGACACATCCATCCAAAACAAAATTGGGCTTCAGTTGAGGCCGGGGCAC CTCCCGGCTATTATCACAGCGATTCGTTGTGGCGGTCACCATTCCAGCTG TGTACCATTTCGCGACCATTACACGACTTAAGCCCAGCATATTGAACTGC ACGCGATTCAGGTTAACATGGCGGCAGATGACCTGGGGATCGTGTGGGAC CAGGGCAGTGACATGCGCTACGAGCGAAGCACTGATATCGGCTGGGGAAC CATCGACTCTCTTGTAGATGAGGATGGACGGCCTTTCATTGTGACGCTAC TCCCGCACGTTGCCTACACGCGCCGATGCGACAAGACGCCCATTTCCAAC ACCACGGTTGTCGCTCATTGTTATGCGGATAAGACCAGTTCGGCTAAGAC TGAGTGGATGCAAGACGCGCACCTCTGGTTCGTTGGCGAGGAAAATCGCA CACTTGAGAATAGCCGAGAGGTACGGTCAGAAGTAAGTGGGGACGGACCA ACATGAGGGAAGGCCGGTGTGTTTCGCGCGGGCACATGCACGGAACAAAA TGTCAGATGAGAAGGACGACCGGAAAAATCAAGAAGTTTATGTCAGATCC TAAATTCATAGTCGACGACGAATGAATGCCGTGGGATTTTCGTAAGGGTA GGCATGCAGCATGCGTTGAGGCCGTGCTACTGCGGTGTGAAATGGTTGTA CGTATGGAGTGCCTTGGCACGTTTTGTACGCGTGCGTAGACGACGGGCTC GGGTAGTGGGGCCCTTTCGAATTGGGAATTGATTCTGATTGGCGAAAACG TGAATTGAGAGGGCAAAGCGAAGGGGAGAGTTGCCGACTCCGCAAAGCTC CCAGGTAAACTACGCCTATGTGCATTAATTATCATCAGTCTGAAGACAGA ATTCAATGGAGGAGGTAGCAAGAATTCCAGCCGACCTTTTCTCCCTTCCG CTTGTTGTTTCTTTGTTTTGTTATTGTTTTTGTTTTTGATAATCCCCCCT CTCTTCCATTCATTGCACCCACCCCCAACGCGGCGCGTGTTCTCCCTGTC TGTGCTTCTTTGTTTTTGTTTGTTTGCTTGTTTTGTTTTGTTTTTGTTTT GATAACCTCCCCTCTCTTCCATTGCACCCACCCCCGACGCGGTGCGTGTA CGGCTAGGAGAGCATGTGGACGTTGACTGGGTCTCTCTGACTTGTGGCCT TGGTTGTGGTGACCTTTGATTCTCCCTTTTTTTTAGTTATTTCATTTTAT TTTTGTTTTGCCTGGCCTCGCGTGCCAAGTGGGAGCGATGGGCTCTACCC TCCGGTTCGACATGCCACCTGTGACACCGAACTCCCTGGGGGGTCACCTC TGCGTGGTATGTTTTCTGTTTCGTTTGGTTCTTGTTTTAATCGCGATTGA TTGTGTTGACCCCCTGGGTCCTTTTTTGAATCTTTTGTCATGTACCCCAT TTGGGGTAGTCAGCCTGTGGTCACGGAAGTCGACTGCGTCAGTTGGACCA GTTCGGACAATGGAAGGTACTGAGCAGAGACCGGAACAGTTTTTAATGTG AAGACAACAGCAACAACAACAACGCCAACAAGAGTGTGG
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Coding sequence (CDS) from alignment at P-lacustris_contig948:34046..38284-

>mRNA_P-lacustris_contig948.15859.1 ID=mRNA_P-lacustris_contig948.15859.1|Name=mRNA_P-lacustris_contig948.15859.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1872bp|location=Sequence derived from alignment at P-lacustris_contig948:34046..38284- (Pleurocladia lacustris SAG_25_93)
ATGGTCTCGCCCATGAAGAACTTGCCGACCTTGTCACCAAACGCAACGTG
CGCCGACTGGGCGGCGTGGGTTCCTCCTCGTTCAGATCCCGCCGTGGTGA
TGCAGATGGTCTCGCCCATGAAGAACTTGCCGACCTTGTCACCAAACGCA
ACGTGCGCCGACTGGGCGGCGTGGGTTCCTCCTCGTTCAGATCCCGCCGT
GGTGATGCAGGTGGTGAGCAAGGACTACTTGGACGTGCAGCTAAACTTTA
TTCGATTCATGGAGCTCAACTCGTCGTTCACGCGTGACCACCTCTACATC
ATGTGCATGGATGAAGAATCTCTGGAGTACATGAGTTCGTCCATGGGGAT
CCGTTGCCTCCCTCTCAGCGGATTCGACTTCCCGTCGCATGCGCAGATCT
GGATTTTGAGGGTGAAAGTGGTCTCTTGCCTGGTGGTGAGCAAGGACTAC
TTGGACGTGCAGCTAAACTTTATTCGATTCATGGAGCTCAACTCGTCGTT
CACGCGTGACCACCTCTACATCATGTGCATGGATGAAGAATCTCTGGAGT
ACATGAGTTCGTCCATGGGGATCCGTTGCCTCCCTCTCAGCGGATTCGAC
TTCCCGTCGCATGCGCAGATCTGGATTTTGAGGGTGAAAGTGGTCTCTTG
CCTGGTGGAAGCTGGACAAGATGTGCTCATGTCGGATGCAGATGCTCTGT
GGCTGGGCGATCCCGCGAAGGATTTTGCGAATCCCAGGATAGTGGGCAGC
AGCATTGTGGCATCTAGGGGGAGTTTTCCATCACAACTTGGGAGCAAGTG
GGGTTCAACAATCTGCATGGGGTTCGCTCTTTTCCGAGGGAGGGACACGC
ACGCCATGCAAAAGTTCTTAACCATCATGAGCGAGCTGGTACACGTCCTT
ATGGATGACCAAAAATCGGTGGAAGCTGGACAAGATGTGCTCATGTCGGA
TGCAGATGCTCTGTGGCTGGGCGATCCCGCGAAGGATTTTGCGAATCCCA
GGATAGTGGGCAGCAGCATTGTGGCATCTAGGGGGAGTTTTCCATCACAA
CTTGGGAGCAAGTGGGGTTCAACAATCTGCATGGGGTTCGCTCTTTTCCG
AGGGAGGGACACGCACGCCATGCAAAAGTTCTTAACCATCATGAGCGAGC
TGGTACACGTCCTTATGGATGACCAAAAATCGGTTAACATGGCGGCAGAT
GACCTGGGGATCGTGTGGGACCAGGGCAGTGACATGCGCTACGAGCGAAG
CACTGATATCGGCTGGGGAACCATCGACTCTCTTGTAGATGAGGATGGAC
GGCCTTTCATTGTGACGCTACTCCCGCACGTTGCCTACACGCGCCGATGC
GACAAGACGCCCATTTCCAACACCACGGTTGTCGCTCATTGTTATGCGGA
TAAGACCAGTTCGGCTAAGACTGAGTGGATGCAAGACGCGCACCTCTGGT
TCGTTGGCGAGGAAAATCGCACACTTGAGAATAGCCGAGAGGTACGGTCA
GAAGTAAGTGGGGACGGACCAACATGAGTTAACATGGCGGCAGATGACCT
GGGGATCGTGTGGGACCAGGGCAGTGACATGCGCTACGAGCGAAGCACTG
ATATCGGCTGGGGAACCATCGACTCTCTTGTAGATGAGGATGGACGGCCT
TTCATTGTGACGCTACTCCCGCACGTTGCCTACACGCGCCGATGCGACAA
GACGCCCATTTCCAACACCACGGTTGTCGCTCATTGTTATGCGGATAAGA
CCAGTTCGGCTAAGACTGAGTGGATGCAAGACGCGCACCTCTGGTTCGTT
GGCGAGGAAAATCGCACACTTGAGAATAGCCGAGAGGTACGGTCAGAAGT
AAGTGGGGACGGACCAACATGA
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