mRNA_P-lacustris_contig946.15845.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig946.15845.1
Unique NamemRNA_P-lacustris_contig946.15845.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig946.15845.1 vs. uniprot
Match: D7G9G8_ECTSI (Putative deacetylase sulfotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9G8_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 9.720e-17
Identity = 37/50 (74.00%), Postives = 42/50 (84.00%), Query Frame = 2 
Query:    2 DFTRTVARVAEWAGLPYHEFKYDKHEFKGACSRKFGSYDRPDFFADGGRY 151
            +FT TVA VAEWAGLP HEF+YDKHEFKGAC  K   +++PDFFADGGRY
Sbjct:  374 NFTETVAVVAEWAGLPEHEFEYDKHEFKGACRDKIRYHNQPDFFADGGRY 423
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BLAST of mRNA_P-lacustris_contig946.15845.1 vs. uniprot
Match: A0A6H5JDR2_9PHAE (Sulfotransfer_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDR2_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.600e-16
Identity = 41/83 (49.40%), Postives = 57/83 (68.67%), Query Frame = 2 
Query:    2 DFTRTVARVAEWAGLPYHEFKYD-KHEFKGA-CSRKFGSYDRPDFFADGGRYETMLEEEELLREWYRPHTERLEKLLGRKMLW 244
            +FT T+ +VA   GLP H ++YD +H+   A C R       P+ FA+GGRY+ MLE++ +L+EWYRPH ERL +LLGR+M W
Sbjct:  454 NFTGTLDKVARHIGLPPHGYEYDSRHQHASAPCERN-----HPELFAEGGRYQKMLEDQRVLQEWYRPHNERLYRLLGREMPW 531
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BLAST of mRNA_P-lacustris_contig946.15845.1 vs. uniprot
Match: D7G3W4_ECTSI (Sulfotransfer_1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3W4_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 5.640e-16
Identity = 42/83 (50.60%), Postives = 50/83 (60.24%), Query Frame = 2 
Query:    2 DFTRTVARVAEWAGLPYHEFKYDK--HEFKGACSRKFGSYDRPDFFADGGRYETMLEEEELLREWYRPHTERLEKLLGRKMLW 244
            D    +A VA   GLP  +F  D+      G C    G  + PDFF + GRY+ MLEEE+L REWYRPH ERL KLLGR M+W
Sbjct:  157 DLPGVLADVAAHIGLPGSDFDSDRPVQHSTGLCPA-LGRGEDPDFFGEEGRYDKMLEEEDLFREWYRPHNERLFKLLGRSMMW 238
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BLAST of mRNA_P-lacustris_contig946.15845.1 vs. uniprot
Match: A0A6H5KMM8_9PHAE (Sulfotransfer_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMM8_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 7.550e-16
Identity = 39/83 (46.99%), Postives = 48/83 (57.83%), Query Frame = 2 
Query:    2 DFTRTVARVAEWAGLPYHEFKY--DKHEFKGACSRKFGSYDRPDFFADGGRYETMLEEEELLREWYRPHTERLEKLLGRKMLW 244
            DF  T+ R A   GLP H+F Y  D     GAC        RP FF + GRY+ MLE+E+L R+WYRPH ERL  L+G+   W
Sbjct:  139 DFLPTLERAARHLGLPPHDFYYNSDFQHSTGACKEN-----RPQFFGEDGRYKKMLEQEQLFRDWYRPHNERLYSLIGKDFKW 216
[Close]
BLAST of mRNA_P-lacustris_contig946.15845.1 vs. uniprot
Match: D7G3W5_ECTSI (Similar to heparan sulfate sulfotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3W5_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 2.400e-15
Identity = 40/84 (47.62%), Postives = 52/84 (61.90%), Query Frame = 2 
Query:    2 DFTRTVARVAEWAGLPYHEFKYDKHEFK---GACSRKFGSYDRPDFFADGGRYETMLEEEELLREWYRPHTERLEKLLGRKMLW 244
            DF  T+ R A   GLP H+F YD  +F+   GAC        RP FF + GRY+ MLE+E+L R+WYRPH ERL  L+G+ + W
Sbjct:  294 DFLPTLERAARHLGLPPHDFYYDS-DFQHGTGACKDN-----RPQFFGEDGRYKKMLEQEQLFRDWYRPHNERLYSLIGKDLKW 371
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig946.15845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G9G8_ECTSI9.720e-1774.00Putative deacetylase sulfotransferase n=1 Tax=Ecto... [more]
A0A6H5JDR2_9PHAE1.600e-1649.40Sulfotransfer_1 domain-containing protein n=1 Tax=... [more]
D7G3W4_ECTSI5.640e-1650.60Sulfotransfer_1 domain-containing protein n=1 Tax=... [more]
A0A6H5KMM8_9PHAE7.550e-1646.99Sulfotransfer_1 domain-containing protein n=1 Tax=... [more]
D7G3W5_ECTSI2.400e-1547.62Similar to heparan sulfate sulfotransferase n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig946contigP-lacustris_contig946:4825..5589 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size405
Cds size273
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig946.15845.1prot_P-lacustris_contig946.15845.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig946 4904..5536 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817374.5063994-UTR-P-lacustris_contig946:4824..49031622817374.5063994-UTR-P-lacustris_contig946:4824..4903Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig946 4825..4903 -
1693495017.0945544-UTR-P-lacustris_contig946:4824..49031693495017.0945544-UTR-P-lacustris_contig946:4824..4903Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig946 4825..4903 -
1622817374.540308-UTR-P-lacustris_contig946:5536..55891622817374.540308-UTR-P-lacustris_contig946:5536..5589Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig946 5537..5589 -
1693495017.1385524-UTR-P-lacustris_contig946:5536..55891693495017.1385524-UTR-P-lacustris_contig946:5536..5589Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig946 5537..5589 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817374.519263-CDS-P-lacustris_contig946:4903..50821622817374.519263-CDS-P-lacustris_contig946:4903..5082Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig946 4904..5082 -
1693495017.110452-CDS-P-lacustris_contig946:4903..50821693495017.110452-CDS-P-lacustris_contig946:4903..5082Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig946 4904..5082 -
1622817374.5299222-CDS-P-lacustris_contig946:5442..55361622817374.5299222-CDS-P-lacustris_contig946:5442..5536Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig946 5443..5536 -
1693495017.1261513-CDS-P-lacustris_contig946:5442..55361693495017.1261513-CDS-P-lacustris_contig946:5442..5536Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig946 5443..5536 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig946.15845.1

>prot_P-lacustris_contig946.15845.1 ID=prot_P-lacustris_contig946.15845.1|Name=mRNA_P-lacustris_contig946.15845.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=91bp
MSSSTTSTSSKEPVAESLEVMIDPISSPMAGDTKQCWRRKNYCANGIART
QSALRSFSDAKCCGSSSIYRSHTHCKLFISVFAGLASRRR*
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mRNA from alignment at P-lacustris_contig946:4825..5589-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig946.15845.1 ID=mRNA_P-lacustris_contig946.15845.1|Name=mRNA_P-lacustris_contig946.15845.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=765bp|location=Sequence derived from alignment at P-lacustris_contig946:4825..5589- (Pleurocladia lacustris SAG_25_93)
GGACTTCACCAGGACGGTGGCGAGAGTGGCGGAGTGGGCGGGCCTCCCGT
ATCATGAGTTCAAGTACGACAAGCACGAGTTCAAAGGAGCCTGTAGCAGA
AAGTTTGGAAGTTATGATCGACCCGATTTCTTCGCCGATGGCGGGAGGTA
AGCTTTCGAAGACATGGAAGATGACAGCATTGCACGTCGTCGAGTGAAAT
GCACTCCTGGCGGTGCTTCTTGGGTGGGCTTTCACAGGCACTTGCCTCCG
CTGCTTTCTGCTCACTTCCTTGGCCCATGACCCCAAAATCGAGTTGGGTA
GATCGCGTCTCCAACACGATCCGACATATGGCGCTTGCTTCATGCAAGAA
ACCAGTATCGACACGTGTCTAGAGTATCTCTAAACATCGTATGTCAGGCG
CAACATGACACATCTTCACACCCGATTGCATATCTAATCTCGAAAGATCC
GATTGCCGGTTTTCTAACTGTGTTTTCCGAAAAACTCCTTCACCCTGCCT
TGCGCAGATACGAAACAATGCTGGAGGAGGAAGAATTATTGCGCGAATGG
TATCGCCCGCACACAGAGCGCCTTGAGAAGCTTCTCGGACGCAAAATGTT
GTGGTAGTTCTTCCATTTACCGTAGCCACACACATTGCAAGCTATTTATT
TCTGTTTTTGCGGGTTTAGCATCAAGAAGGAGGTAATCTAACATTTGGTG
GGATGAATAGGCCTGGCGGAGCGTGGTGATTGGAGAGGCCGTGGTCGGGC
GACATTGTCTCTGTG
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Coding sequence (CDS) from alignment at P-lacustris_contig946:4825..5589-

>mRNA_P-lacustris_contig946.15845.1 ID=mRNA_P-lacustris_contig946.15845.1|Name=mRNA_P-lacustris_contig946.15845.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=546bp|location=Sequence derived from alignment at P-lacustris_contig946:4825..5589- (Pleurocladia lacustris SAG_25_93)
ATGAGTTCAAGTACGACAAGCACGAGTTCAAAGGAGCCTGTAGCAGAAAG
TTTGGAAGTTATGATCGACCCGATTTCTTCGCCGATGGCGGGAGATGAGT
TCAAGTACGACAAGCACGAGTTCAAAGGAGCCTGTAGCAGAAAGTTTGGA
AGTTATGATCGACCCGATTTCTTCGCCGATGGCGGGAGATACGAAACAAT
GCTGGAGGAGGAAGAATTATTGCGCGAATGGTATCGCCCGCACACAGAGC
GCCTTGAGAAGCTTCTCGGACGCAAAATGTTGTGGTAGTTCTTCCATTTA
CCGTAGCCACACACATTGCAAGCTATTTATTTCTGTTTTTGCGGGTTTAG
CATCAAGAAGGAGGTAAATACGAAACAATGCTGGAGGAGGAAGAATTATT
GCGCGAATGGTATCGCCCGCACACAGAGCGCCTTGAGAAGCTTCTCGGAC
GCAAAATGTTGTGGTAGTTCTTCCATTTACCGTAGCCACACACATTGCAA
GCTATTTATTTCTGTTTTTGCGGGTTTAGCATCAAGAAGGAGGTAA
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