mRNA_P-lacustris_contig945.15840.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig945.15840.1
Unique NamemRNA_P-lacustris_contig945.15840.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
BLAST of mRNA_P-lacustris_contig945.15840.1 vs. uniprot
Match: A0A6H5J907_9PHAE (G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J907_9PHAE)

HSP 1 Score: 568 bits (1463), Expect = 7.610e-188
Identity = 315/374 (84.22%), Postives = 335/374 (89.57%), Query Frame = 2
Query: 1079 SAERRGSGLALDQGERSLLVLNRHEMCAELERLARTLGMPDPARNGGRACVGMVGYPNVGKSSLINVLVGATPLSHGGVRVSVGATPGKTKHFQTLVLSDNLMLCDCPGLVFPSFVSSTAEMICAGVLPIMQMRNVMPPMALIARRIPRHILEITYTIKLPVLPGDAKDTGGKAMLSPQQLLESYCQARGLFRARALGESDMPRAARQILKDFTDGRLLFCHPPPTLTPEATARFLKETHTTALKTTKLAAKLAVQXXXXXXXXXXXXXXXGTAEAAALLQPENVNLMAEVLEKRGAVAARDAELGPAGGAGVGGGGRKPTRREMGLLRWGKKDRKVGNKDPYGNPDVETAASLGPVGAKVAGGGKRGAGVRRR 2200
            SA RRGSG  + +G++SL VL+R EMC ELERLARTLG PDP+RNGGRACVGMVG+PNVGKSSLINV+VGATPLSHGGVRVSVGATPGKTKHFQTLVLSD+LMLCDCPGLVFPSFVSSTAEMICAGVLPIMQMRNVMPPMALIARRIPRHILEITYTIKLPVLPGD +DT G AMLSPQQLLESYCQARGLFRARALGESDMPRAARQILKDFTDGRLLFCHPP  L  EA  RFLKET  TALKTTKLAAK    XXXXXXXXXXXXX   +AEAA+L QPEN++LMAEVLEKR AVAAR+AELG   GAG  GG  K T+REMGLLRWGKKDRKVGNKDPYGNPDVETAASLGPVGA+VAGGGK+G   ++R
Sbjct:  331 SAGRRGSGTDVGKGDKSLQVLSRLEMCVELERLARTLGTPDPSRNGGRACVGMVGFPNVGKSSLINVMVGATPLSHGGVRVSVGATPGKTKHFQTLVLSDSLMLCDCPGLVFPSFVSSTAEMICAGVLPIMQMRNVMPPMALIARRIPRHILEITYTIKLPVLPGDVRDTAGNAMLSPQQLLESYCQARGLFRARALGESDMPRAARQILKDFTDGRLLFCHPPADLESEAITRFLKETDKTALKTTKLAAKXXXXXXXXXXXXXXXXXAVASAEAASLKQPENIDLMAEVLEKRAAVAAREAELGLTVGAGGRGG--KLTKREMGLLRWGKKDRKVGNKDPYGNPDVETAASLGPVGARVAGGGKKGRRGKKR 702          
BLAST of mRNA_P-lacustris_contig945.15840.1 vs. uniprot
Match: A0A835YPB7_9STRA (Lsg1, cytoplasmic GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPB7_9STRA)

HSP 1 Score: 285 bits (728), Expect = 8.480e-80
Identity = 180/370 (48.65%), Postives = 221/370 (59.73%), Query Frame = 2
Query: 1136 VLNRHEMCAELERLARTLGMPDPARNG----GRACVGMVGYPNVGKSSLINVLVGATPLSHGGV-RVSVGATPGKTKHFQTLVLSDNLMLCDCPGLVFPSFVSSTAEMICAGVLPIMQMRNVMPPMALIARRIPRHILEITYTIKLPVLPGDAKDTGGKAML----------------SPQQLLESYCQARGLFRARALGESDMPRAARQILKDFTDGRLLFCHPPPTLTPEAT-ARFLKETHTTALKTTKLAAKLAVQXXXXXXXXXXXXXXXGTAEAAALLQPENVNLMAEVLEKRGAVAARDAELGPAGGAGVGGGGRKPTRREMGLLRWGKKDRKVGNKDPYGNPDVETAASLGPVGAKVAGGGKR 2179
            VL+R E+   +E LAR+LG    AR+     GRACVGMVGYPNVGKSS+IN L GATP SHG   RVSVGATPGKTKHFQTL LS +L+LCDCPGLVFPSFVSS AEMICAGVLPIMQMR+ + P+AL+ARR+PRHILE+TYTI                                  +  ++L ++C++RGL+R   LG+ D+PRAAR +LKD+T+G LLFCHPPP L+  A  A FL+ET  T L + +LAAKLA Q               G + A      E   +  E L  R  + AR  E+     A + G    PT+ E G  RWGKK +K  +  PY N   E  A+    GA V  GGK+
Sbjct:  362 VLSREELLHVIEHLARSLGAASAARSAERHHGRACVGMVGYPNVGKSSVINALAGATPFSHGATARVSVGATPGKTKHFQTLALSPSLLLCDCPGLVFPSFVSSAAEMICAGVLPIMQMRDALAPIALVARRVPRHILELTYTIXXXXXXXXXXXXXXXXXXXXXXXXXXXALATRPPTATEVLTAFCESRGLYRPGGLGDYDLPRAARMLLKDYTEGTLLFCHPPPDLSDAAAVAAFLRETERTHLSSGRLAAKLAEQQRKAY----------GASSAQQQGGGEGGVVDGEALTAR--LKARADEIRAREAAAMDG----PTKVEQGFKRWGKKSKKYRDPTPYAN--WEGGAAAAARGASVQRGGKK 713          
BLAST of mRNA_P-lacustris_contig945.15840.1 vs. uniprot
Match: A0A7S2V0G3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0G3_9STRA)

HSP 1 Score: 211 bits (536), Expect = 2.070e-57
Identity = 122/238 (51.26%), Postives = 151/238 (63.45%), Query Frame = 2
Query: 1235 MVGYPNVGKSSLINVLVGATPLSHGGVRVSVGATPGKTKHFQTLVL--------------------------------SDNLMLCDCPGLVFPSFVSSTAEMICAGVLPIMQMRNVMPPMALIARRIPRHILEITYTIKLPVLPGDAKDTGGKAM-LSPQQLLESYCQARGLFRARALGESDMPRAARQILKDFTDGR-LLFCHPPPTLTPEATARFLKETHTTALKTTKLAAKLAVQ 1846
            MVGYPNVGKSS+INVL G TP SHG VRV VGATPGKTKHFQTL +                                S  L LCDCPGLVFPSFV+ST EMICAGVLPI QMR    P+ LIA RIPRHI E+TYT++ P    + ++  G+   L+  +LLE +CQ R  F   A G+ D  RA+R +L+D+T+G+ LLFCHPPP+L+P     FL++T  T  +  K+AAKLA++
Sbjct:    1 MVGYPNVGKSSVINVLAGVTPSSHGSVRVGVGATPGKTKHFQTLNVPLPGGPGVPPXXXXXXXXXXXXXXXXXXPTSDSGMLTLCDCPGLVFPSFVASTGEMICAGVLPINQMREHRGPVGLIASRIPRHIFELTYTLRFPREGEEEEEAAGEGRPLTATELLEVFCQTRHYFMG-ASGQVDEQRASRYLLQDYTEGKVLLFCHPPPSLSPPEVKDFLEDTTGTMARFGKVAAKLALE 237          
BLAST of mRNA_P-lacustris_contig945.15840.1 vs. uniprot
Match: A0A7R9UCU9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCU9_9STRA)

HSP 1 Score: 202 bits (513), Expect = 1.880e-54
Identity = 121/243 (49.79%), Postives = 151/243 (62.14%), Query Frame = 2
Query: 1130 LLVLNRHEMCAELERLART----LGMPDPARNGGRACVGMVGYPNVGKSSLINVLVGATPLSHGGVRVSVGATPGKTKHFQTLVLSDN--------------LMLCDCPGLVFPSFVSSTAEMICAGVLPIMQMRNVMPPMALIARRIPRHILEITYTIKLPVLPGDAKDT--GGKAML---------------SPQQLLESYCQARGLFRARALGESDMPRAARQILKDFTDGRLLFCHPPP 1753
            + +L + E+  +L  LAR        P   R    A +GMVG+PNVGKSS+INVLVGA+   HG VRV+VGATPGKTKHFQTL+L D               L LCDCPGLVFPSFVSSTAEMICAGVL +  MR+ + P+ALIARRIPRH+LE TYTI++    G    T  G  + L               + Q+LL++YC+ARG   A   G +D+ R AR I+  +T G+LL+CHPPP
Sbjct:   67 IAILTKAELLGKLGHLAREHHRQFAGPSSTRP---ATIGMVGFPNVGKSSVINVLVGASKFVHGNVRVAVGATPGKTKHFQTLMLQDEAENPTDEVTAEQPALQLCDCPGLVFPSFVSSTAEMICAGVLQVNTMRDPIAPVALIARRIPRHVLESTYTIQIHSDEGAPVGTEAGNVSTLQTEEERRAEFEDRFPTAQELLKAYCEARGFLTAGG-GVADVNRGARDIILAYTSGKLLYCHPPP 305          
BLAST of mRNA_P-lacustris_contig945.15840.1 vs. uniprot
Match: A0A7S2PA07_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PA07_9STRA)

HSP 1 Score: 200 bits (508), Expect = 2.170e-53
Identity = 133/326 (40.80%), Postives = 185/326 (56.75%), Query Frame = 2
Query: 1166 LERLARTLGMPDPARNGGRACVGMVGYPNVGKSSLINVLVGATPLSHGGVRVSVGATPGKTKHFQTLVLSD--NLMLCDCPGLVFPSFVSSTAEMICAGVLPIMQMRNVMPPMALIARRIPRHILEITYTIKLPV-LPGDAKDTG--GKAMLSP--QQLLESYCQARGLFRARALGESDMPRAARQILKDFTDGRLLFCHPPPTLTPEATA----RFLKETHTTALKTTKLAAKLAVQXXXXXXXXXXXXXXXGTAEAAALLQPENVNLMAEVLEKRGAVAARDAELGPAGGAGVGGGGRKPTRREMGLLRWGKKDRKVGNKDPYG 2110
            L+  A++ G     +   R   GMVG+PNVGKSS+INVLVG++   HGGVRV+V A PGKTKHFQTL+L D  ++MLCDCPGLVFPSFVSSTA+MI AGV PI QMR+  P ++LI +R+PR +L   Y + +P     + K+ G  GK +  P  ++LL +YC  R +  A A G  D  RA+R ++KD+++G+LL+CH PP L  + +      + +ET TTA+K T    K                     A   A  + EN+  + E  +   A+   + +    G         K  +    + +WGKK RK+ NKDPYG
Sbjct:    4 LDSFAKSHGCEPEEKFDNRIQYGMVGFPNVGKSSVINVLVGSSKAIHGGVRVAVAAQPGKTKHFQTLLLPDRSDMMLCDCPGLVFPSFVSSTADMIAAGVYPIAQMRDHWPVVSLICKRVPREVLNTHYGMHIPEPTKQELKEKGWTGKDLPPPTAEELLGTYCIVRSML-AAASGVPDYQRASRHVVKDYSEGKLLYCHSPPALKGDDSIMNNEEYQRETLTTAIKNTNNLKKKEKMEQ---------------AIEMAAAKKENMVDVEEDFDDFDAIFGDEIDRPTEGD--------KRGKSHKKIKQWGKKGRKLRNKDPYG 305          
BLAST of mRNA_P-lacustris_contig945.15840.1 vs. uniprot
Match: A0A1V9ZAV8_9STRA (Large subunit GTPase 1 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZAV8_9STRA)

HSP 1 Score: 206 bits (525), Expect = 4.080e-53
Identity = 118/219 (53.88%), Postives = 146/219 (66.67%), Query Frame = 2
Query: 1133 LVLNRHEMCAEL----ERLARTLGMPDPARNGGRACVGMVGYPNVGKSSLINVLVGATPLSHGGVRVSVGATPGKTKHFQTLVLSDNLMLCDCPGLVFPSFVSSTAEMICAGVLPIMQMRNVMPPMALIARRIPRHILEITYTIKLPVLPGDAKDTGGKAMLSPQQLLESYCQARGLFRARALGESDMPRAARQILKDFTDGRLLFCHPPPTLTPEATA 1777
            +VL R E+ A L    ER+   +G+   A + G    GMVG+PNVGKSS IN L+GA+  SH   RV+VGATPGKTKHFQT++LSD +MLCDCPGLVFPSFV+S AEM+C GVLPI Q+R+ +PP  L+ARRIPR + E TY IK+P  P   K T     +    LLE Y +ARG F     G  D  RAAR +L+D+  GRLL+CHPPP + P   A
Sbjct:  295 VVLTREELLAYLNGRAERVTARVGLR--AEDKGLVKFGMVGFPNVGKSSAINALLGASNYSHHTQRVAVGATPGKTKHFQTMILSDKIMLCDCPGLVFPSFVNSKAEMLCCGVLPISQLRDHVPPCELVARRIPRLVFESTYGIKVP-FPNSGKYTDP---VDVYVLLEVYARARG-FATAGKGGPDQSRAARVLLRDYVMGRLLYCHPPPGVAPTTPA 506          
BLAST of mRNA_P-lacustris_contig945.15840.1 vs. uniprot
Match: W7U9F1_9STRA (Lsg1p n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U9F1_9STRA)

HSP 1 Score: 201 bits (511), Expect = 1.720e-52
Identity = 112/220 (50.91%), Postives = 147/220 (66.82%), Query Frame = 3
Query:  192 RGKMTSVLEASNLDDFIASAMMSERAFESHKENTVVL--GPDGIEMSLDENGEINAAASGKDGGTDEFDFDHMNVPRRPAWGADMTAEDLDYLEKKSFLEWRRGIANAEENNVDM-KVTPFEKNLEVWRQLWRVIERSDLVCQLVDARNPLFYYSTDLEAYAKELMPPKPMIVVVNKADYLSRAQQQEWVQHFEGRGVAVLFFSARQQQEQLNKEAREGR 842
            R +++SVLE ++LDDF+ +AMM++R F + KE  +++     G   S+   G++     G D G   F F  + VPRRP W   M+A  LD  EK SFLEWRR IA  EE + +  KVTPFEKNLEVWRQLWRV+ERS ++ Q+VDAR+PLFYYS DL AYA E+ P +  +V+VNKADYL+ AQ+ EW  +F+ RG    FFSAR  QE L  +AR+ R
Sbjct:   23 RKQLSSVLEMNSLDDFLDTAMMAQRDFSAIKERDLLVLDAKTGGLTSILPRGQV---TPGTDKGMTTFAFRQLKVPRRPKWHTGMSAAALDRAEKASFLEWRREIAQLEETSGERAKVTPFEKNLEVWRQLWRVLERSHVIVQIVDARDPLFYYSEDLHAYAAEMHPARECLVLVNKADYLTPAQRGEWAAYFQKRGWNHAFFSARSAQELLTVQARKER 239          
BLAST of mRNA_P-lacustris_contig945.15840.1 vs. uniprot
Match: A0A485KVN8_9STRA (Aste57867_12475 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KVN8_9STRA)

HSP 1 Score: 204 bits (518), Expect = 3.320e-52
Identity = 108/182 (59.34%), Postives = 133/182 (73.08%), Query Frame = 2
Query: 1232 GMVGYPNVGKSSLINVLVGATPLSHGGVRVSVGATPGKTKHFQTLVLSDNLMLCDCPGLVFPSFVSSTAEMICAGVLPIMQMRNVMPPMALIARRIPRHILEITYTIKLPVLPGDAKDTGGKAMLSPQQLLESYCQARGLFRARALGESDMPRAARQILKDFTDGRLLFCHPPPTLTPEATA 1777
            GMVG+PNVGKSS IN L+GA+  +H   RV+VGATPGKTKHFQTLVLSD +MLCDCPGLVFPSFV+S AEM+C GVLPI Q+R+ +PP  L+ARRIPR + E TY IK+PV P   K      + S   +LE Y +ARG F     G  D  RAARQ+L+D+ +G+LL+CHPPP ++P   A
Sbjct:  331 GMVGFPNVGKSSAINALLGASNYAHHAQRVAVGATPGKTKHFQTLVLSDAIMLCDCPGLVFPSFVNSKAEMLCCGVLPISQLRDHVPPCELVARRIPRVVFEKTYGIKVPV-PNTGKYNDDVDVYS---VLEVYARARG-FTTTGKGGPDTSRAARQLLRDYVNGKLLYCHPPPGVSPTTAA 507          
BLAST of mRNA_P-lacustris_contig945.15840.1 vs. uniprot
Match: A0A024TX60_9STRA (CP-type G domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TX60_9STRA)

HSP 1 Score: 202 bits (514), Expect = 1.170e-51
Identity = 114/222 (51.35%), Postives = 149/222 (67.12%), Query Frame = 2
Query: 1106 ALDQGERSLLVLNRHEMCAELERLARTL----GMPDPARNGGRACVGMVGYPNVGKSSLINVLVGATPLSHGGVRVSVGATPGKTKHFQTLVLSDNLMLCDCPGLVFPSFVSSTAEMICAGVLPIMQMRNVMPPMALIARRIPRHILEITYTIKLPVLPGDAKDTGGKAMLSPQQLLESYCQARGLFRARALGESDMPRAARQILKDFTDGRLLFCHPPPTL 1759
            A+D+      VL R ++   +ER A+ +    G+   A + GR   GMVG+PNVGKSS IN L+GA+  +H   RV+VGATPGKTKHFQTL LSD +MLCDCPGLVFPSFV+S AEM+C GVLPI Q+R+ +PP  L+ARRIPR + E TY IK+PV P   K       ++   +LE Y +ARG F        D  RAAR +L+D+ +G+LL+CHPPP++
Sbjct:  290 AVDEERADCKVLTRLDLLEYMERRAKAVVGKVGLR--AEDRGRVKFGMVGFPNVGKSSAINALLGASNFAHHAQRVAVGATPGKTKHFQTLALSDTIMLCDCPGLVFPSFVNSKAEMLCCGVLPIAQLRDHVPPCELVARRIPRVVFEETYGIKVPV-PNTGKYNDP---VNVYTVLEVYARARG-FTTTGKSGPDTSRAARVLLRDYVNGKLLYCHPPPSV 504          
BLAST of mRNA_P-lacustris_contig945.15840.1 vs. uniprot
Match: A0A4D9D3A0_9STRA (G domain-containing protein n=2 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D3A0_9STRA)

HSP 1 Score: 204 bits (519), Expect = 1.200e-51
Identity = 122/250 (48.80%), Postives = 163/250 (65.20%), Query Frame = 3
Query:  105 LGKALQRRRAQERAAADSASSYD-VDGSKARGKMTSVLEASNLDDFIASAMMSERAFESHKENTVVL--GPDGIEMSLDENGEINAAASGKDGGTDEFDFDHMNVPRRPAWGADMTAEDLDYLEKKSFLEWRRGIANAEENNVDM-KVTPFEKNLEVWRQLWRVIERSDLVCQLVDARNPLFYYSTDLEAYAKELMPPKPMIVVVNKADYLSRAQQQEWVQHFEGRGVAVLFFSARQQQEQLNKEAREGR 842
            +G+AL R+  Q+  AA  A     +DG K   +++SVLE ++LDDF+ +AMM++R F + KE  +++     G   S+   G++     G D G   F F  + VPRRP W   M+A  LD  EK SFLEWRR IA  EE + +  +VTPFEKNLEVWRQLWRV+ERS ++ Q+VDAR+PLFYYS DL AYA E+ P +  +V+VNKADYL+ AQ+ EW  +F+ RG    FFSAR+ QE L  +ARE R
Sbjct:   15 VGRALMRKHQQQGPAAVGAHEQQRLDGCK---QLSSVLEMNSLDDFLDTAMMAQRDFSAIKERDLLVLDAKTGGLTSILPRGQV---TPGADKGMTTFAFRQLKVPRRPKWHTGMSAAALDRAEKASFLEWRREIAQLEETSGERARVTPFEKNLEVWRQLWRVLERSHVIVQIVDARDPLFYYSEDLHAYAAEMHPARERLVLVNKADYLTPAQRGEWATYFQKRGWNHAFFSARRAQELLTLQAREER 258          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig945.15840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J907_9PHAE7.610e-18884.22G domain-containing protein n=2 Tax=Ectocarpus Tax... [more]
A0A835YPB7_9STRA8.480e-8048.65Lsg1, cytoplasmic GTPase n=1 Tax=Tribonema minus T... [more]
A0A7S2V0G3_9STRA2.070e-5751.26Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9UCU9_9STRA1.880e-5449.79Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2PA07_9STRA2.170e-5340.80Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A1V9ZAV8_9STRA4.080e-5353.88Large subunit GTPase 1 n=1 Tax=Achlya hypogyna Tax... [more]
W7U9F1_9STRA1.720e-5250.91Lsg1p n=1 Tax=Nannochloropsis gaditana TaxID=72520... [more]
A0A485KVN8_9STRA3.320e-5259.34Aste57867_12475 protein n=1 Tax=Aphanomyces stella... [more]
A0A024TX60_9STRA1.170e-5151.35CP-type G domain-containing protein n=1 Tax=Aphano... [more]
A0A4D9D3A0_9STRA1.200e-5148.80G domain-containing protein n=2 Tax=Nannochloropsi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig945contigP-lacustris_contig945:232..4458 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score554.7
Seed ortholog evalue3.4e-155
Seed eggNOG ortholog2880.D7G7R6
KEGG koko:K14539
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000054,GO:0000166,GO:0001882,GO:0001883,GO:0003006,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005783,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006403,GO:0006405,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0009790,GO:0009791,GO:0009793,GO:0009966,GO:0009987,GO:0010154,GO:0010467,GO:0010646,GO:0010817,GO:0012505,GO:0015030,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016072,GO:0016462,GO:0016604,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0022414,GO:0022613,GO:0023051,GO:0031503,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032879,GO:0033036,GO:0033750,GO:0034470,GO:0034613,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0042254,GO:0042886,GO:0043021,GO:0043022,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044877,GO:0045184,GO:0046483,GO:0046626,GO:0046907,GO:0048316,GO:0048366,GO:0048367,GO:0048518,GO:0048583,GO:0048608,GO:0048731,GO:0048825,GO:0048827,GO:0048856,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051049,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0061458,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0090069,GO:0090070,GO:0090304,GO:0097159,GO:0097367,GO:0099402,GO:1900076,GO:1901265,GO:1901360,GO:1901363,GO:2000012
EggNOG free text desc.Large subunit GTPase 1
EggNOG OGsCOG1161@1,KOG1424@2759
Ec32 ortholog descriptionLsg1, cytoplasmic GTPase involved in the ribosome assembly
Ec32 orthologEc-06_000630.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009
Exons5
Model size2836
Cds size1125
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817373.916786-UTR-P-lacustris_contig945:231..7891622817373.916786-UTR-P-lacustris_contig945:231..789Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig945 232..789 -
1693495016.5389383-UTR-P-lacustris_contig945:231..7891693495016.5389383-UTR-P-lacustris_contig945:231..789Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig945 232..789 -
1622817373.9627914-UTR-P-lacustris_contig945:2525..31731622817373.9627914-UTR-P-lacustris_contig945:2525..3173Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig945 2526..3173 -
1693495016.5921385-UTR-P-lacustris_contig945:2525..31731693495016.5921385-UTR-P-lacustris_contig945:2525..3173Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig945 2526..3173 -
1622817373.9727447-UTR-P-lacustris_contig945:3571..39191622817373.9727447-UTR-P-lacustris_contig945:3571..3919Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig945 3572..3919 -
1693495016.6057544-UTR-P-lacustris_contig945:3571..39191693495016.6057544-UTR-P-lacustris_contig945:3571..3919Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig945 3572..3919 -
1622817373.9830914-UTR-P-lacustris_contig945:4301..44581622817373.9830914-UTR-P-lacustris_contig945:4301..4458Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig945 4302..4458 -
1693495016.6194668-UTR-P-lacustris_contig945:4301..44581693495016.6194668-UTR-P-lacustris_contig945:4301..4458Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig945 4302..4458 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817373.927236-CDS-P-lacustris_contig945:789..12991622817373.927236-CDS-P-lacustris_contig945:789..1299Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig945 790..1299 -
1693495016.55276-CDS-P-lacustris_contig945:789..12991693495016.55276-CDS-P-lacustris_contig945:789..1299Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig945 790..1299 -
1622817373.940201-CDS-P-lacustris_contig945:1769..21061622817373.940201-CDS-P-lacustris_contig945:1769..2106Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig945 1770..2106 -
1693495016.5693922-CDS-P-lacustris_contig945:1769..21061693495016.5693922-CDS-P-lacustris_contig945:1769..2106Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig945 1770..2106 -
1622817373.9503093-CDS-P-lacustris_contig945:2247..25251622817373.9503093-CDS-P-lacustris_contig945:2247..2525Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig945 2248..2525 -
1693495016.5811372-CDS-P-lacustris_contig945:2247..25251693495016.5811372-CDS-P-lacustris_contig945:2247..2525Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig945 2248..2525 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig945.15840.1prot_P-lacustris_contig945.15840.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig945 790..2525 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig945.15840.1

>prot_P-lacustris_contig945.15840.1 ID=prot_P-lacustris_contig945.15840.1|Name=mRNA_P-lacustris_contig945.15840.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=375bp
MCAELERLARTLGMPDPARNGGRACVGMVGYPNVGKSSLINVLVGATPLS
HGGVRVSVGATPGKTKHFQTLVLSDNLMLCDCPGLVFPSFVSSTAEMICA
GVLPIMQMRNVMPPMALIARRIPRHILEITYTIKLPVLPGDAKDTGGKAM
LSPQQLLESYCQARGLFRARALGESDMPRAARQILKDFTDGRLLFCHPPP
TLTPEATARFLKETHTTALKTTKLAAKLAVQLGKAKAKASAGGAAVGTAE
AAALLQPENVNLMAEVLEKRGAVAARDAELGPAGGAGVGGGGRKPTRREM
GLLRWGKKDRKVGNKDPYGNPDVETAASLGPVGAKVAGGGKRGAGVRRRT
ALFGIRCRTTKHTPVLHDEVARNG*
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mRNA from alignment at P-lacustris_contig945:232..4458-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig945.15840.1 ID=mRNA_P-lacustris_contig945.15840.1|Name=mRNA_P-lacustris_contig945.15840.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=4227bp|location=Sequence derived from alignment at P-lacustris_contig945:232..4458- (Pleurocladia lacustris SAG_25_93)
CAACGAGTCACGCTCAACGACCGCTCTCCTGTTCCTTATCTCCCAGTGAG GAGGCCTCAGCGATGCCTTATGGGAAGAGCAACCCGAAACGCGGACAACA GTCTCTTGGGAAAGCGCTCCAGCGACGCCGTGCGCAAGAGCGAGCTGCAG CTGACAGGTGACAAGTGATAACTCGCTAAACCTTCAACACAGACAATGGA GTTGCCAGTACTACCCATTCTTGCGAACCACTTTAGAGGGGCGAGAGCAG TACCCTCATATGAATTGGGGCGAGGTAGTACTCTCATTCGGCTTTGTCGC GTCTGGGATAGGCTCCTCTGTCGGTTGTCGCTACTGCTGTAGAAAATCAG GGAAGGATTTCCAGCGGAGAACCGGCTCGACACCAGCAGTATTTGAACGT TTCTCAAGGCGGCAGTGCCTGTCGTTTGCAGGTCTTTTCTCCTGTCCGTA TCCTTTCTCTGTTCATCAAGTTCCCTCGCCTTTGCCTTTAAAACCTGCGG TTGCCGTATTTTCGTACTCTCACACAAACATGTATCCAGCGCGTCGTCCT ATGATGTGGATGGCAGCAAGGCTCGTGGCAAAATGACGTCGGTGCTCGAG GCCAGCAACTTGGACGACTTCATTGCCTCCGCGATGATGTCGGAGCGAGC CTTCGAATCCCACAAGGAGAACACTGTCGTGCTCGGCCCCGACGGCATTG AGATGAGCCTGGACGAAAATGGTGAGATCAATGCGGCGGCGAGCGGCAAG GATGGCGGCACGGACGAGTTCGACTTCGACCATATGAACGTTCCAAGGAG GCCGGCGTGGGGAGCGGATATGACCGCAGAGGATCTAGACTACCTCGAGA AGAAGTCGTTCCTCGAGTGGCGGAGAGGAATCGCCAAGTAAGTTCAGATC ACAAGCGAGGTTTAGTCGAGCGAAATTGACACCCTCATCATGACTGCTGT GGACATGGTTGGGCGGGGTGTTCATGAATTGCATGATTTTTTCATCTGTC GCGCTTTATCGCCTCCACGGACAGTACCGTCAACTCCAATCTGTTGGAAC CACCACCTTGGAGATACCAGGTCTATCAGTGCTTGAAGCAAACTCCGCGA TGCATCGCGAAAACTGCTGCCGATGATGCACATCCCTCTGTGGTGGTACG CAGATAAGGCGCTGACCATGTAGCTAGCTGCTTTGTTTGAAGAGCTTCCC TTGCTGCGACGCCTATACCACTCGAAGTGCGCACATGACTAATCCTTCTT CCTCCTCTCGATGTCGTCACCGTACTGCGTTGCAGCGCCGAGGAGAATAA CGTCGACATGAAGGTTACGCCCTTCGAGAAGAACTTGGAGGTGTGGCGAC AGCTGTGGCGCGTTATCGAGAGAAGCGACCTCGTGTGCCAGCTAGTTGAC GCGCGCAATCCGCTATTCTACTACTCCACCGACCTCGAGGCCTACGCAAA GGAGCTCATGCCACCGAAGCCCATGATAGTGGTGGTGAACAAGGCTGACT ACCTGAGCCGGGCGCAGCAGCAGGAGTGGGTGCAGCACTTCGAGGGAAGA GGCGTCGCCGTGCTATTCTTCTCGGCTCGACAGCAGCAAGAGCAGCTCAA CAAGGAAGCCAGAGAAGGGAGGGACGTCGTAGAAGGCGGCTTGGGCGCCG GCGCTCCTGTCCCGGATGACTACGACTCCGAAGACGATGATGACGTCACT GACGACGACGATTCTGAGCTCGACACATTGGAGGAGGGGGAGGAGGACCT GGAAGTAGGGCTGTCGGATGCGTGCTCTGCTGACGGACCAGGCGACACAG CGGTATCTTCTTCGAAGGCGAAGAAGGGGGTGCTGGAGGAGGGGGAGCCG TGACTTCTTCGGCTGAGCGCCGAGGGAGTGGCTTGGCCCTAGATCAGGGT GAAAGGTCGCTGCTGGTCCTGAACAGACATGAAATGTGCGCCGAATTAGA GCGACTTGCCAGGACTCTTGGGATGCCTGACCCTGCTCGAAACGGGGGCC GCGCGTGCGTCGGGATGGTTGGGTACCCCAACGTGGGGAAGAGCAGCCTG ATAAACGTGCTGGTAGGCGCGACACCGCTATCACACGGTGGTGTTCGGGT GAGCGTGGGCGCCACCCCCGGCAAGACGAAGCACTTCCAGACGTTGGTAC TCAGCGACAACCTCATGCTGTGTGACTGTCCAGGTCTCGTGTTCCCCAGT TTCGTTAGCAGGTGAGAGCAGACAGTACCAGTGATTGAACATCGCCCCAA TTCTTCCGGTGGATTGACTCCGCCCATTTGAGGACGCCCTCTTGTTAACG TGCCCCTTTCCCTACCCGACTTTCCCCTCGATCATGGCAACGACGTTCAC AGCACGGCCGAAATGATATGTGCTGGAGTGTTGCCCATCATGCAGATGCG CAACGTCATGCCCCCCATGGCCCTCATCGCGCGACGAATACCTCGGCACA TCCTCGAAATCACGTACACCATCAAACTCCCCGTCCTCCCGGGGGACGCC AAGGATACTGGGGGGAAGGCCATGCTCTCGCCGCAGCAGCTCCTAGAGTC GTACTGTCAGGCCAGAGGGCTGTTCCGTGCTCGCGCTCTCGGGGAATCAG ACATGCCCCGCGCGGCGCGACAGATCCTGAAGGATTTCACTGATGGACGA CTTTTGTTCTGCCATCCGCCTCCCACCCTGACTCCAGAGGTGAGCAACTA GTTCGGTATTGGTGTGGGTGCGCGCTCGTGCCACGTGTTGTCCTGAGTGT TGTTTGCCTAGGATACCCGAGTGAGCTTTACCGGTCCGCGTATTGGCGAG GTTTGGTGTCCCCATATCACGGAGCTTGAGCGAGATTATTGGCGTTCGCT CGTGTGCGTGGCCTTTTTTATGCCTTTGAATGACGCCACTCCTACATAAC CTCATCAGTGTCTGTCACCAGTCGCTGCCTCCCATCACCATGTCAGTCCC TACGCTGGGTTTTGCGTGCATCATCATCTTGTGTCAAACCTACGGGCGCA GAGTCTATGCCATGTCGTCGTTCACTTTTTTTGGAATACTGTACCACCTC TTGCATTGAACAGCACATGTATGAGGAAATCGCCCATCTTGGGTATTGAC ATCTTGCTTTTTCACCAGTTCTCACATTTCACACGATACCGGGATGTTTT TGAACGCAGGCCACTGCACGATTCCTCAAGGAGACGCACACGACTGCCCT CAAGACTACCAAGCTCGCCGCCAAGCTCGCGGTGCAGCTAGGCAAGGCGA AGGCAAAGGCGAGCGCCGGGGGTGCGGCCGTCGGTACTGCCGAAGCAGCG GCTCTTCTGCAGCCAGAAAATGTGAACCTCATGGCTGAGGTGCTGGAGAA ACGGGGGGCGGTGGCGGCGCGCGACGCCGAGCTTGGCCCAGCTGGTGGCG CGGGGGTCGGTGGCGGAGGCAGGAAGCCGACAAGAAGAGAGATGGGGTTG CTGCGGTGGGGCAAGAAAGACCGCAAGGTTGGGAACAAAGATCCGTATGG CAATCCCGATGTCGAGACCGCGGCGTCGCTCGGGCCGGTAGGGGCGAAGG TAGCTGGAGGAGGAAAAAGGGGCGCAGGGGTAAGAAGAAGGACGGCTTTG TTCGGAATACGATGCCGCACCACCAAACATACTCCGGTCCTGCATGACGA AGTCGCGCGAAATGGGTGAAGCGAGCCCAGCCCTTTACTTTCGTCTTGGT GTGTCCGTTGGTGTGTGGCCTCGTGAGTGCTATTTTCGTTTGAGGTGCAG GCGACTCTCTCCCTCTTCCTGCATCTGCAAGTTTTGTGTCCCGCTTTGGC GAAGAGAGCGGGGGTGCTCAGAATTTCGACAGTGCAGTGCAGGGCAGTCC CAATTGCAAAGAGGAGCACTGATGTTTGTACAGTAGTATATTGCAGATAG AGCGACTCGTAGTTTTAGTTGAGTGATTAAGCCGTTCGGCAGGACAGACG TACCGTAGGCTGAATAAAGACCAATTTAATACTGGAATATGGAGAAGTGG TTACCGATGACGCTATTTTTTGGCGAGGGTACCGCAACGGCTCGTGAGGA GAAATGATTGTTGTGGCGTTGCGCTTGATACGGAGGACATTCTCGAAATG GTGTTGGCGAATGGGGTCGACGAGCGTTACGCATCATGCAAGTTTTCGAG AAAATCAAGCATTGATGGATGAAGAATGTTGGTCTTGACTGACACCCCAT GTGCTTGATGGGTCGAGTACAAACGCT
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Coding sequence (CDS) from alignment at P-lacustris_contig945:232..4458-

>mRNA_P-lacustris_contig945.15840.1 ID=mRNA_P-lacustris_contig945.15840.1|Name=mRNA_P-lacustris_contig945.15840.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=2250bp|location=Sequence derived from alignment at P-lacustris_contig945:232..4458- (Pleurocladia lacustris SAG_25_93)
ATGTGCGCCGAATTAGAGCGACTTGCCAGGACTCTTGGGATGCCTGACCC
TGCTCGAAACGGGGGCCGCGCGTGCGTCGGGATGGTTGGGTACCCCAACG
TGGGGAAGAGCAGCCTGATAAACGTGCTGGTAGGCGCGACACCGCTATCA
CACGGTGGTGTTCGGGTGAGCGTGGGCGCCACCCCCGGCAAGACGAAGCA
CTTCCAGACGTTGGTACTCAGCGACAACCTCATGCTGTGTGACTGTCCAG
GTCTCGTGTTCCCCAGTTTCGTTAGCAGATGTGCGCCGAATTAGAGCGAC
TTGCCAGGACTCTTGGGATGCCTGACCCTGCTCGAAACGGGGGCCGCGCG
TGCGTCGGGATGGTTGGGTACCCCAACGTGGGGAAGAGCAGCCTGATAAA
CGTGCTGGTAGGCGCGACACCGCTATCACACGGTGGTGTTCGGGTGAGCG
TGGGCGCCACCCCCGGCAAGACGAAGCACTTCCAGACGTTGGTACTCAGC
GACAACCTCATGCTGTGTGACTGTCCAGGTCTCGTGTTCCCCAGTTTCGT
TAGCAGCACGGCCGAAATGATATGTGCTGGAGTGTTGCCCATCATGCAGA
TGCGCAACGTCATGCCCCCCATGGCCCTCATCGCGCGACGAATACCTCGG
CACATCCTCGAAATCACGTACACCATCAAACTCCCCGTCCTCCCGGGGGA
CGCCAAGGATACTGGGGGGAAGGCCATGCTCTCGCCGCAGCAGCTCCTAG
AGTCGTACTGTCAGGCCAGAGGGCTGTTCCGTGCTCGCGCTCTCGGGGAA
TCAGACATGCCCCGCGCGGCGCGACAGATCCTGAAGGATTTCACTGATGG
ACGACTTTTGTTCTGCCATCCGCCTCCCACCCTGACTCCAGAGCACGGCC
GAAATGATATGTGCTGGAGTGTTGCCCATCATGCAGATGCGCAACGTCAT
GCCCCCCATGGCCCTCATCGCGCGACGAATACCTCGGCACATCCTCGAAA
TCACGTACACCATCAAACTCCCCGTCCTCCCGGGGGACGCCAAGGATACT
GGGGGGAAGGCCATGCTCTCGCCGCAGCAGCTCCTAGAGTCGTACTGTCA
GGCCAGAGGGCTGTTCCGTGCTCGCGCTCTCGGGGAATCAGACATGCCCC
GCGCGGCGCGACAGATCCTGAAGGATTTCACTGATGGACGACTTTTGTTC
TGCCATCCGCCTCCCACCCTGACTCCAGAGGCCACTGCACGATTCCTCAA
GGAGACGCACACGACTGCCCTCAAGACTACCAAGCTCGCCGCCAAGCTCG
CGGTGCAGCTAGGCAAGGCGAAGGCAAAGGCGAGCGCCGGGGGTGCGGCC
GTCGGTACTGCCGAAGCAGCGGCTCTTCTGCAGCCAGAAAATGTGAACCT
CATGGCTGAGGTGCTGGAGAAACGGGGGGCGGTGGCGGCGCGCGACGCCG
AGCTTGGCCCAGCTGGTGGCGCGGGGGTCGGTGGCGGAGGCAGGAAGCCG
ACAAGAAGAGAGATGGGGTTGCTGCGGTGGGGCAAGAAAGACCGCAAGGT
TGGGAACAAAGATCCGTATGGCAATCCCGATGTCGAGACCGCGGCGTCGC
TCGGGCCGGTAGGGGCGAAGGTAGCTGGAGGAGGAAAAAGGGGCGCAGGG
GTAAGAAGAAGGACGGCTTTGTTCGGAATACGATGCCGCACCACCAAACA
TACTCCGGTCCTGCATGACGAAGTCGCGCGAAATGGGTGAGCCACTGCAC
GATTCCTCAAGGAGACGCACACGACTGCCCTCAAGACTACCAAGCTCGCC
GCCAAGCTCGCGGTGCAGCTAGGCAAGGCGAAGGCAAAGGCGAGCGCCGG
GGGTGCGGCCGTCGGTACTGCCGAAGCAGCGGCTCTTCTGCAGCCAGAAA
ATGTGAACCTCATGGCTGAGGTGCTGGAGAAACGGGGGGCGGTGGCGGCG
CGCGACGCCGAGCTTGGCCCAGCTGGTGGCGCGGGGGTCGGTGGCGGAGG
CAGGAAGCCGACAAGAAGAGAGATGGGGTTGCTGCGGTGGGGCAAGAAAG
ACCGCAAGGTTGGGAACAAAGATCCGTATGGCAATCCCGATGTCGAGACC
GCGGCGTCGCTCGGGCCGGTAGGGGCGAAGGTAGCTGGAGGAGGAAAAAG
GGGCGCAGGGGTAAGAAGAAGGACGGCTTTGTTCGGAATACGATGCCGCA
CCACCAAACATACTCCGGTCCTGCATGACGAAGTCGCGCGAAATGGGTGA
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