mRNA_P-lacustris_contig94.15800.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig94.15800.1
Unique NamemRNA_P-lacustris_contig94.15800.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
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BLAST of mRNA_P-lacustris_contig94.15800.1 vs. uniprot
Match: D7FT38_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT38_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 7.590e-16
Identity = 76/151 (50.33%), Postives = 83/151 (54.97%), Query Frame = 1 
Query:    1 SLQILLHKNLMRLRHFMAAPDQPIPDAPKDWMPPMPRQDTPSAEESDVESDPAGDQQRLS---AAGKEKGXXXXXXXXXXXXXXXXXXXXXXXXTGVAYE------ATRGLPGFSTTEPPHSPRSGSGGAGAAAGGISEPQIGGGRQGVHG 426
            SLQI+LHKNLMRLR FMAAPD+PIP+APKDWMPPMP  DTP A ESD ESD  GD+Q +    A  K K XXXXXX                  +G          A R LPGFS TE       G  GAGAA  G     I  G+Q V G
Sbjct:   33 SLQIVLHKNLMRLRQFMAAPDEPIPNAPKDWMPPMPTPDTPPAGESDSESDSTGDEQGVQGERATRKGKXXXXXXXRQPRAEGCAAPGVTSARASGSXXXXXXXXGAVRLLPGFSATETQFVGEHGGAGAGAA--GACGAAITDGQQQVRG 181
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig94.15800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FT38_ECTSI7.590e-1650.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig94contigP-lacustris_contig94:96990..99139 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_002710.1
Exons2
Model size1498
Cds size942
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig94.15800.1prot_P-lacustris_contig94.15800.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig94 96990..97931 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817367.3186994-CDS-P-lacustris_contig94:96989..979311622817367.3186994-CDS-P-lacustris_contig94:96989..97931Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig94 96990..97931 -
1693495010.9789698-CDS-P-lacustris_contig94:96989..979311693495010.9789698-CDS-P-lacustris_contig94:96989..97931Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig94 96990..97931 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817367.3297887-UTR-P-lacustris_contig94:97931..983171622817367.3297887-UTR-P-lacustris_contig94:97931..98317Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig94 97932..98317 -
1693495010.9953265-UTR-P-lacustris_contig94:97931..983171693495010.9953265-UTR-P-lacustris_contig94:97931..98317Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig94 97932..98317 -
1622817367.341319-UTR-P-lacustris_contig94:98971..991391622817367.341319-UTR-P-lacustris_contig94:98971..99139Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig94 98972..99139 -
1693495011.014353-UTR-P-lacustris_contig94:98971..991391693495011.014353-UTR-P-lacustris_contig94:98971..99139Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig94 98972..99139 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig94.15800.1

>prot_P-lacustris_contig94.15800.1 ID=prot_P-lacustris_contig94.15800.1|Name=mRNA_P-lacustris_contig94.15800.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=314bp
MHEGTAPHIPSGTPFVPTAWRNRVTSGNSGAGGSAAAAAPAASSALFPSS
PPGPSISSISSPTPLSFCFPPPLSSHASSSSAPRGAAAAASSVRLQPTNS
STPAPAAPKTSSVASGQPKKKSRRPSKSPSTTSRGGRGGAAPPLIAPAPP
RIGGVAGGGFMPPFYPPPFGLSPFGLPPFAPRPLAAAFLARPRPPPLPLP
IGAPFPLFGMMPSVPFPSASSFAPPPPAPPPMRSQRRGPKIDEATAAEIR
KLQTATLLANSRRNKSAEDEDLEIDVEGNDGNVGTGREGVGRGGGAGAGI
AGWVGAPAGAGTKT
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mRNA from alignment at P-lacustris_contig94:96990..99139-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig94.15800.1 ID=mRNA_P-lacustris_contig94.15800.1|Name=mRNA_P-lacustris_contig94.15800.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=2150bp|location=Sequence derived from alignment at P-lacustris_contig94:96990..99139- (Pleurocladia lacustris SAG_25_93)
AGCCTCCAGATATTGCTTCACAAGAATCTCATGCGGCTACGCCACTTCAT
GGCCGCACCCGACCAGCCGATACCGGACGCGCCCAAGGATTGGATGCCCC
CGATGCCCAGACAGGACACACCTTCAGCAGAAGAGAGCGACGTCGAAAGT
GACCCTGCCGGCGACCAGGTGAGCTAGTGTGAAAAGGGGCAAAAAAGGGC
GAGACACAGCCGTTTCAGAGGTATCAGACCTATGTCTGATATATATCTGG
TTCGCTTCGGCTTTTGGCTCTAGTCTTACCGTGGAGACCAGATGCTGCAT
CTCTCTAGTCTAACCTAGACGTAGAAACGACGAACAAGCCTGCATGGTGT
AACAACGCCACAGTGACCTGTCAGTAGCGGCTGCTCCGTTGCGTGGTTGC
GTCGTCTCACGAGAATGGCTTGTCTCTCACCTGGTTTGGTTGGCGGTTTC
ATTTATTGTCAAGTCAACCTCGTTCCGTTCGCTCATCCAAATGGTCGTTG
CTTGCTGGAACGCGTTGTTGTTTTTCTGACCCGTGACCAGCCGATGCACG
CAGGATATGCCGTGACACAGCAATCATGGCATTCCATGAAAAGAGTCATG
AGAGCTTCATGCGATTTCATGACATGTCATCGCCGATTCCTTTGCTACTA
TTGCACCTCAAAGCCGGTGAAGTGCTAGCCTCTGTCGCTGGCATCTTTCT
GCGTTCCCGCCGCTCGAACCAGTCTTGCTTCGGTGTGTGATGATAACTTC
TTCACAGACCCTGCTGCCCTTTCTCGTGCTGACTGTTGTCCTATTCATCC
TCGATACAAAAACCTGGAGCAGCAACGCTTGAGCGCGGCTGGAAAGGAAA
AGGGGAAGCAGAAGCAGCGGCGGCAATCGGAGGAGGCTTCGGCATCAGCG
TCAACCGCCGCAGCAGCGGGAGCAGCAACAGGAGTAGCTTATGAGGCGAC
AAGAGGGCTTCCCGGCTTCAGCACTACCGAGCCACCGCACTCTCCGCGAT
CTGGCTCTGGTGGTGCTGGGGCTGCAGCTGGCGGGATTTCCGAGCCGCAG
ATTGGGGGAGGGAGGCAAGGAGTCCATGGTCAGGCGCGTCATCAGGAACG
GCGGCCTCGACGTTGTTGTCGTCTGCGAGACGAAAGTACAAACCCCGCAA
AAGGAGGGGTCAGGTCGGAGGCGGTAGCGGCGGTTTGGGGACGCATCTGT
CCACGGACATGCACGAGGGCACCGCGCCGCACATACCGAGCGGCACTCCG
TTTGTTCCAACAGCGTGGCGAAACCGAGTGACCAGCGGCAACAGCGGCGC
GGGCGGGAGCGCCGCCGCCGCTGCCCCCGCCGCATCGTCCGCTCTTTTCC
CCTCTTCTCCTCCTGGACCATCTATATCATCTATATCGTCTCCTACTCCT
CTTTCTTTTTGTTTCCCCCCGCCACTTTCTTCTCACGCCTCGTCTTCTTC
CGCTCCGCGCGGGGCCGCTGCTGCGGCTTCTTCAGTGCGGCTGCAGCCAA
CAAATTCGTCTACACCGGCACCAGCGGCCCCAAAGACGTCGTCAGTTGCC
AGCGGGCAGCCCAAAAAGAAGTCACGAAGACCATCGAAGTCACCGTCCAC
CACTTCCCGCGGTGGCCGTGGTGGTGCGGCTCCGCCGTTGATAGCCCCCG
CCCCGCCAAGGATAGGTGGCGTAGCGGGCGGCGGCTTCATGCCACCGTTT
TACCCGCCTCCGTTCGGCCTTTCGCCGTTCGGTCTACCCCCCTTCGCGCC
CCGTCCTCTGGCGGCGGCTTTTCTTGCCCGACCCCGTCCTCCTCCTCTGC
CTCTTCCTATTGGAGCTCCGTTTCCTCTTTTTGGCATGATGCCTTCTGTC
CCTTTCCCTTCCGCCTCTTCTTTCGCCCCCCCTCCACCCGCGCCGCCACC
GATGCGCAGTCAGCGACGGGGGCCCAAGATCGACGAGGCCACGGCGGCGG
AAATTCGGAAGCTGCAGACGGCCACCCTGCTGGCGAACAGTCGCAGGAAC
AAATCGGCCGAAGACGAAGACTTAGAGATTGACGTGGAGGGGAATGATGG
GAACGTAGGCACAGGAAGAGAAGGAGTGGGAAGGGGGGGGGGCGCAGGAG
CGGGGATAGCGGGATGGGTGGGAGCACCGGCCGGAGCAGGGACGAAGACG
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Coding sequence (CDS) from alignment at P-lacustris_contig94:96990..99139-

>mRNA_P-lacustris_contig94.15800.1 ID=mRNA_P-lacustris_contig94.15800.1|Name=mRNA_P-lacustris_contig94.15800.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1884bp|location=Sequence derived from alignment at P-lacustris_contig94:96990..99139- (Pleurocladia lacustris SAG_25_93)
ATGCACGAGGGCACCGCGCCGCACATACCGAGCGGCACTCCGTTTGTTCC
AACAGCGTGGCGAAACCGAGTGACCAGCGGCAACAGCGGCGCGGGCGGGA
GCGCCGCCGCCGCTGCCCCCGCCGCATCGTCCGCTCTTTTCCCCTCTTCT
CCTCCTGGACCATCTATATCATCTATATCGTCTCCTACTCCTCTTTCTTT
TTGTTTCCCCCCGCCACTTTCTTCTCACGCCTCGTCTTCTTCCGCTCCGC
GCGGGGCCGCTGCTGCGGCTTCTTCAGTGCGGCTGCAGCCAACAAATTCG
TCTACACCGGCACCAGCGGCCCCAAAGACGTCGTCAGTTGCCAGCGGGCA
GCCCAAAAAGAAGTCACGAAGACCATCGAAGTCACCGTCCACCACTTCCC
GCGGTGGCCGTGGTGGTGCGGCTCCGCCGTTGATAGCCCCCGCCCCGCCA
AGGATAGGTGGCGTAGCGGGCGGCGGCTTCATGCCACCGTTTTACCCGCC
TCCGTTCGGCCTTTCGCCGTTCGGTCTACCCCCCTTCGCGCCCCGTCCTC
TGGCGGCGGCTTTTCTTGCCCGACCCCGTCCTCCTCCTCTGCCTCTTCCT
ATTGGAGCTCCGTTTCCTCTTTTTGGCATGATGCCTTCTGTCCCTTTCCC
TTCCGCCTCTTCTTTCGCCCCCCCTCCACCCGCGCCGCCACCGATGCGCA
GTCAGCGACGGGGGCCCAAGATCGACGAGGCCACGGCGGCGGAAATTCGG
AAGCTGCAGACGGCCACCCTGCTGGCGAACAGTCGCAGGAACAAATCGGC
CGAAGACGAAGACTTAGAGATTGACGTGGAGGGGAATGATGGGAACGTAG
GCACAGGAAGAGAAGGAGTGGGAAGGGGGGGGGGCGCAGGAGCGGGGATA
GCGGGATGGGTGGGAGCACCGGCCGGAGCAGGGACGAAGACGATGCACGA
GGGCACCGCGCCGCACATACCGAGCGGCACTCCGTTTGTTCCAACAGCGT
GGCGAAACCGAGTGACCAGCGGCAACAGCGGCGCGGGCGGGAGCGCCGCC
GCCGCTGCCCCCGCCGCATCGTCCGCTCTTTTCCCCTCTTCTCCTCCTGG
ACCATCTATATCATCTATATCGTCTCCTACTCCTCTTTCTTTTTGTTTCC
CCCCGCCACTTTCTTCTCACGCCTCGTCTTCTTCCGCTCCGCGCGGGGCC
GCTGCTGCGGCTTCTTCAGTGCGGCTGCAGCCAACAAATTCGTCTACACC
GGCACCAGCGGCCCCAAAGACGTCGTCAGTTGCCAGCGGGCAGCCCAAAA
AGAAGTCACGAAGACCATCGAAGTCACCGTCCACCACTTCCCGCGGTGGC
CGTGGTGGTGCGGCTCCGCCGTTGATAGCCCCCGCCCCGCCAAGGATAGG
TGGCGTAGCGGGCGGCGGCTTCATGCCACCGTTTTACCCGCCTCCGTTCG
GCCTTTCGCCGTTCGGTCTACCCCCCTTCGCGCCCCGTCCTCTGGCGGCG
GCTTTTCTTGCCCGACCCCGTCCTCCTCCTCTGCCTCTTCCTATTGGAGC
TCCGTTTCCTCTTTTTGGCATGATGCCTTCTGTCCCTTTCCCTTCCGCCT
CTTCTTTCGCCCCCCCTCCACCCGCGCCGCCACCGATGCGCAGTCAGCGA
CGGGGGCCCAAGATCGACGAGGCCACGGCGGCGGAAATTCGGAAGCTGCA
GACGGCCACCCTGCTGGCGAACAGTCGCAGGAACAAATCGGCCGAAGACG
AAGACTTAGAGATTGACGTGGAGGGGAATGATGGGAACGTAGGCACAGGA
AGAGAAGGAGTGGGAAGGGGGGGGGGCGCAGGAGCGGGGATAGCGGGATG
GGTGGGAGCACCGGCCGGAGCAGGGACGAAGACG
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