mRNA_P-lacustris_contig94.15797.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig94.15797.1
Unique NamemRNA_P-lacustris_contig94.15797.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
[Close]
BLAST of mRNA_P-lacustris_contig94.15797.1 vs. uniprot
Match: D7FT42_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT42_ECTSI)

HSP 1 Score: 275 bits (702), Expect = 3.990e-89
Identity = 150/201 (74.63%), Postives = 168/201 (83.58%), Query Frame = 2 
Query:   14 VNMGAERPSELAGSSRAAFLKTALGGAAVLATIAVNAKETLAFELALPFTSKAAPELEKVAQVADYSRFVTRLEQDLAAGALKGGQEDSAVVVRVLEGYLKPMQEVMLRVAPVMQLAGREARDRVRLLPLIMQGHLLELEMACGTKNAKEQLQEVQEVRETLDEFIALAKTRYEIPDLDPVPAPEGDQLGIFGCSFYGMKE 616
            VNM AE PS   G+SRAAFL++ALGGAA LAT+     ET AF  ALPF  K  PELE+V +VA YSRFV +LEQDL AGALKGG EDS VV+RVLE YL+PMQE ML+VAP+MQLAGRE R+RV+LLPLIM+GHLLEL+ ACGTK+AKEQL+EVQEVRETLDEFIALAKTRYEI  LDP  AP+GDQLGIFGCSFYGMK 
Sbjct:   51 VNMRAEGPSGQIGTSRAAFLRSALGGAAALATVVARPTETPAF--ALPFGPKDNPELEEVVKVAGYSRFVNKLEQDLKAGALKGGPEDSVVVLRVLEVYLEPMQEEMLKVAPLMQLAGRENRERVKLLPLIMKGHLLELKAACGTKDAKEQLEEVQEVRETLDEFIALAKTRYEIAPLDPEGAPDGDQLGIFGCSFYGMKR 249
[Close]
BLAST of mRNA_P-lacustris_contig94.15797.1 vs. uniprot
Match: A0A0G4H1C3_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4H1C3_VITBC)

HSP 1 Score: 117 bits (293), Expect = 6.440e-28
Identity = 67/161 (41.61%), Postives = 97/161 (60.25%), Query Frame = 2 
Query:  146 LALPFTSKAAPELEK-VAQVADYSRFVTRLEQDLAAGALKGGQEDSAVVVRVLEGYLKPMQEVMLRVAPVMQLAGREARDRVRLLPLIMQGHLLELEMACGTKNAKEQLQEVQEVRETLDEFIALAKTRYEIPDLDPVPA---PEGDQLGIFGCSFYGMKE 616
            ++LPF      ++E+ V ++ADY  +V ++   L  G LKGG  DS  V   L  Y +PMQE M  ++  + L      +R+RLLPL+++GHL EL  A  ++  + QL+EV+EV ETL+EF+ LA  +Y IP + PVP    PE D  GIFGC F+G + 
Sbjct:   82 ISLPFFESEEQKIERAVGEIADYRPYVLKILDKLKTGKLKGGTYDSGTVANFLGIYYRPMQEKMETLSAKIDLEDTTKTERLRLLPLLLKGHLAELREAVISQRPERQLEEVEEVGETLNEFLTLASAKYTIPPI-PVPPDFNPEKDYYGIFGCEFWGKRR 241
[Close]
BLAST of mRNA_P-lacustris_contig94.15797.1 vs. uniprot
Match: A0A6T5MXS9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5MXS9_HETAK)

HSP 1 Score: 106 bits (265), Expect = 4.590e-24
Identity = 60/144 (41.67%), Postives = 91/144 (63.19%), Query Frame = 2 
Query:  191 VAQVADYSRFVTRLEQDLAAGALKGGQEDSAVVVRVLEGYLKPMQEVMLRVAPVMQLAGREARDRVRLLPLIMQGHLLELEMACGTKNAKEQLQEVQEVRETLDEFIALAKTRYEIPD-LDPVPAPEGDQLGIFGCSFYGMKER 619
            V  +A Y   V  + + L A  L+GG++DSAVV    + Y +P+Q  M ++A  ++LA  E + +    PL+M+GHLLEL  AC   +AKEQL+E++EV+ETLD+F+ LA T+Y +P+ L    A   +   IFGC F+G+K +
Sbjct:   74 VEALAGYRAPVADVIRQLKARELRGGRDDSAVVTNYAKKYFEPLQADMAQLAKGLKLA-EEDQKKAETQPLLMKGHLLELAQACAAGDAKEQLEEMEEVQETLDDFLKLAATKYTVPEMLLGRAATSVEYYSIFGCEFWGLKNK 216
[Close]
BLAST of mRNA_P-lacustris_contig94.15797.1 vs. uniprot
Match: W7U1E9_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1E9_9STRA)

HSP 1 Score: 105 bits (262), Expect = 3.220e-23
Identity = 63/145 (43.45%), Postives = 95/145 (65.52%), Query Frame = 2 
Query:  197 QVADYSRFVTRLEQDLA---AGALKGGQEDSAVVVRVLEGYLKPMQEVMLRVAPVMQLAGREARDRVRLLPLIMQGHLLELEMACGTKNAKEQLQEVQEVRETLDEFIALAKT--RYEIPDLDPVPAPEGD---QLGIFGCSFYG 607
            Q+ D +R   ++E+ L+   +  LKGG++DSA VVR ++ + KP+QE M+ +AP M++   E + R+  LPL+++GHL EL  A  T  A EQLQE++EV E++DEF+ALA+   RY++ D    PAPE D   + G F C F+G
Sbjct:  109 QLDDVARARQKVEEVLSGLKSKQLKGGKDDSATVVRYMDAHYKPLQEKMVTLAPKMKVGDEEKQKRLETLPLLLKGHLFELAAAARTGVAAEQLQEMEEVAESVDEFLALARESGRYQVRDYLG-PAPEFDVKREYGPFACEFWG 252
[Close]
BLAST of mRNA_P-lacustris_contig94.15797.1 vs. uniprot
Match: A0A7S1UC06_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UC06_9STRA)

HSP 1 Score: 103 bits (258), Expect = 8.420e-23
Identity = 63/149 (42.28%), Postives = 89/149 (59.73%), Query Frame = 2 
Query:  188 KVAQVADYSRFVTRLEQDLAAGALKGGQEDSAVVVRVLEGYLKPMQEVMLRVAPVMQLAGREARDRVRLLPLIMQGHLLELEMACGTKNAKEQLQEVQEVRETLDEFIALAKTRYEIPDLDPVPAPEGD-----QLGIFGCSFYGMKER 619
            KV +V      V  +   L    LKGGQEDSA V R    Y K + E M   A V +L G + ++R+ LLP +M+GH+LELE AC +++A+EQL+E+ E+ ET+DEFIAL K + +I     + + +G+       G FGC FYGMK +
Sbjct:   96 KVNEVMKLKPQVDLVRSMLKKKELKGGQEDSATVFRYSRAYFKDIPERMGAAAGVAKLPGSQ-QERLGLLPNLMKGHILELEAACKSQSAEEQLKEMDEISETIDEFIALVKDQVKIKPQKMLYSGDGNVDPEAYFGPFGCDFYGMKRK 243
[Close]
BLAST of mRNA_P-lacustris_contig94.15797.1 vs. uniprot
Match: A0A0G4FUV0_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FUV0_9ALVE)

HSP 1 Score: 79.0 bits (193), Expect = 3.290e-13
Identity = 52/174 (29.89%), Postives = 89/174 (51.15%), Query Frame = 2 
Query:  155 PFTSKAAPELEKVAQVADYSRFVTRLEQDLAAGALKGGQEDSAVVVRVLEGYLKPMQEVMLRVAP-VMQLAGREARDRVRLLPLIMQGHLLELEMACGTKNAKEQLQEVQEVRETLDEFIALAKTRYEIPDLDPVPAPEG----DQLGIFGCSFYGMKERAVLAGTFELSCLPP 661
            P  +  A + E V ++A++   V  + + L  G+  G ++D+  V        K MQ+ M   AP + +   R+  +R+++LP +M GH+LEL  A      + Q+  +Q++  TLD+F+ LA  ++ IP   P+P P+     +  GIF C F+G K     AG +   C+ P
Sbjct:  119 PEEASEARKAEMVKEIANFRPQVLWILRKLKDGSFSGQEDDAVAVAMTATMQYKKMQKKMEEYAPEIAKSLERKDGERLKVLPDLMTGHILELFQAVSMAAVRPQINAMQKIGGTLDDFLILASNKFVIP---PIPQPKAQTAEEYYGIFSCEFWGKKR----AGPYSGRCVSP 285
[Close]
BLAST of mRNA_P-lacustris_contig94.15797.1 vs. uniprot
Match: A0A7S0ZKH1_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZKH1_9RHOD)

HSP 1 Score: 57.0 bits (136), Expect = 2.570e-6
Identity = 39/115 (33.91%), Postives = 66/115 (57.39%), Query Frame = 2 
Query:  182 LEKVAQVADYSRFVTRLEQDLAAGALKGGQEDSAVVVR-VLEGYLKPMQEVMLRVAPVMQLAGREARDRVRLLPLIMQGHLLELEMACGTKNAKEQLQEVQEVRETLDEFIALAK 523
            + K+  VA     V ++++++    LK   +D AV+V+ ++  +++P+   M  +A   Q        RV +LPL MQGHL+EL+ A    N  + L+E++EV E+ DEF+AL K
Sbjct:   61 INKIELVAGLREKVMKIQKEVKD--LKQFTDDDAVLVKSLIPLWIEPLIPAMSDIA---QSLNAPQSSRVAILPLAMQGHLIELKAAAAAVNKTQVLEELEEVVESADEFLALMK 170
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig94.15797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FT42_ECTSI3.990e-8974.63Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0G4H1C3_VITBC6.440e-2841.61Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A6T5MXS9_HETAK4.590e-2441.67Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7U1E9_9STRA3.220e-2343.45Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S1UC06_9STRA8.420e-2342.28Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A0G4FUV0_9ALVE3.290e-1329.89Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A7S0ZKH1_9RHOD2.570e-633.91Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig94contigP-lacustris_contig94:68790..74513 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_002750.1
Exons7
Model size862
Cds size714
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817367.9760902-UTR-P-lacustris_contig94:68789..689181622817367.9760902-UTR-P-lacustris_contig94:68789..68918Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig94 68790..68918 -
1693495011.550916-UTR-P-lacustris_contig94:68789..689181693495011.550916-UTR-P-lacustris_contig94:68789..68918Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig94 68790..68918 -
1622817368.075674-UTR-P-lacustris_contig94:74494..745131622817368.075674-UTR-P-lacustris_contig94:74494..74513Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig94 74495..74513 -
1693495011.639984-UTR-P-lacustris_contig94:74494..745131693495011.639984-UTR-P-lacustris_contig94:74494..74513Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig94 74495..74513 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817367.988956-CDS-P-lacustris_contig94:68918..690381622817367.988956-CDS-P-lacustris_contig94:68918..69038Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig94 68919..69038 -
1693495011.5633717-CDS-P-lacustris_contig94:68918..690381693495011.5633717-CDS-P-lacustris_contig94:68918..69038Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig94 68919..69038 -
1622817367.9998913-CDS-P-lacustris_contig94:69197..692871622817367.9998913-CDS-P-lacustris_contig94:69197..69287Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig94 69198..69287 -
1693495011.5727339-CDS-P-lacustris_contig94:69197..692871693495011.5727339-CDS-P-lacustris_contig94:69197..69287Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig94 69198..69287 -
1622817368.0109117-CDS-P-lacustris_contig94:70258..702971622817368.0109117-CDS-P-lacustris_contig94:70258..70297Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig94 70259..70297 -
1693495011.583335-CDS-P-lacustris_contig94:70258..702971693495011.583335-CDS-P-lacustris_contig94:70258..70297Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig94 70259..70297 -
1622817368.0242074-CDS-P-lacustris_contig94:71482..715541622817368.0242074-CDS-P-lacustris_contig94:71482..71554Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig94 71483..71554 -
1693495011.5998178-CDS-P-lacustris_contig94:71482..715541693495011.5998178-CDS-P-lacustris_contig94:71482..71554Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig94 71483..71554 -
1622817368.0377283-CDS-P-lacustris_contig94:72615..727981622817368.0377283-CDS-P-lacustris_contig94:72615..72798Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig94 72616..72798 -
1693495011.6126723-CDS-P-lacustris_contig94:72615..727981693495011.6126723-CDS-P-lacustris_contig94:72615..72798Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig94 72616..72798 -
1622817368.0493681-CDS-P-lacustris_contig94:73690..737761622817368.0493681-CDS-P-lacustris_contig94:73690..73776Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig94 73691..73776 -
1693495011.6218352-CDS-P-lacustris_contig94:73690..737761693495011.6218352-CDS-P-lacustris_contig94:73690..73776Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig94 73691..73776 -
1622817368.0626473-CDS-P-lacustris_contig94:74370..744941622817368.0626473-CDS-P-lacustris_contig94:74370..74494Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig94 74371..74494 -
1693495011.6315145-CDS-P-lacustris_contig94:74370..744941693495011.6315145-CDS-P-lacustris_contig94:74370..74494Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig94 74371..74494 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig94.15797.1prot_P-lacustris_contig94.15797.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig94 68919..74494 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig94.15797.1

>prot_P-lacustris_contig94.15797.1 ID=prot_P-lacustris_contig94.15797.1|Name=mRNA_P-lacustris_contig94.15797.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=238bp
MGAERPSELAGSSRAAFLKTALGGAAVLATIAVNAKETLAFELALPFTSK
AAPELEKVAQVADYSRFVTRLEQDLAAGALKGGQEDSAVVVRVLEGYLKP
MQEVMLRVAPVMQLAGREARDRVRLLPLIMQGHLLELEMACGTKNAKEQL
QEVQEVRETLDEFIALAKTRYEIPDLDPVPAPEGDQLGIFGCSFYGMKER
AVLAGTFELSCLPPILPFPVMYLSGPRFPQPPKISAS*
back to top

mRNA from alignment at P-lacustris_contig94:68790..74513-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig94.15797.1 ID=mRNA_P-lacustris_contig94.15797.1|Name=mRNA_P-lacustris_contig94.15797.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=5724bp|location=Sequence derived from alignment at P-lacustris_contig94:68790..74513- (Pleurocladia lacustris SAG_25_93)
CAGTCGCACTACTGTCAACATGGGTGCAGAGCGACCGTCTGAGCTGGCCG
GTTCGAGCAGGGCAGCTTTTCTCAAAACTGCACTCGGAGGCGCTGCTGTG
CTAGCCACGATTGCCGTCAATGCAAAGGAGACGCTGGCGTTCGGTGAGAG
CTGTACTGGTCCGGATTTCCTTCCTTGTAACACGTGTCCGATTGCTTTGG
GGGCGAGGAGAGCGCGTGTCATGTGCGACAGCTCCTTGCATCATGTTGCA
CTGGAGTGAAAGATGGAGACTGGCACCTGAAAGCAAGGTAGAGATGGAGC
CAGCCAGCAGTCTGGTTCTCCTCATCTACATCCAGTGTTTGAAGCACAGT
TTAGTCTACAGCAGCATCACATCTGCAAAACGTTATCTCCAGCAGTACCG
TGGCTCTTGATACGGAACTGGTCTACAGAATACAACGGAACAGCAGGATG
TGACAGGTAGTTATCTCGCTCTCTTTCCCTCCCTGTTTCCCTCAGAATTT
CTCTGCCAGCAAGAGATGAGATAGCGTCAATGTACACGTTTTCGGTCCAA
GTAACGCTCAGCAGGTAATATGTGGGCTTCTTTCGAGTACGGTAGGATCC
GTGAGATAACACCCCAGGCGGTGACAGGTTGTCATGGGGGGGGTAAAATG
TGGAAATCTATTGAGGGTGTGATGGCTTCTGCCTTTACTCGATCTGAGGC
TAGCCTTGCGGTGTCTGCTGTCAACCTTTACATGTAGAGCTAGCCCTGCC
CTTCACGTCAAAAGCTGCCCCGGAACTGGAGAAGGTGGCCCAGGTGGCGG
ACTACTCTAGGTTTGTCACAAGGGTGAGTGCGTGAATACCATACACACAT
GCTCAGGGTTCCTCTGCTTTTACGAAAATTCCGTGATTCAGGATCTTTAA
ATGCTGGATTGCTTGTCTCCTCCGTGTCCCCCCCTGTCGGGGGAGCCCGC
GGTTTCGAAAGTATTATAGAGTTTTGTGTCGTGTACAGCGTAGTACACGT
CTCACCTTGATCGGGGGGACTGTCGCCAAAAATAAAGGGACGAAAACACA
ACACAACACACACAGGCTACAAACATCTTTCATTGGTCAGCCGGTCAGCC
CGTTCAACGCCAATTCCAGAAACAAACGCACACAACAAACAGAACACACG
CTGGGTCGGTGTTCACGATGGATACGCCAGTCTTTAGCAAAAAACGAGGG
ACCAGGCTTTCGGAAGCTCTCGACAAGATCCCCGCCCCCTCGTTGACGAC
ACGGTCACCCCTTTCCTAACGGTGTTGTATCGAGTTCGGAAAATCGATAA
AATGGCGTGTGGTGTTCATTTGTGGTATCTAGGAAAATTCGGGTCGACCT
GGAACAACTGCAGGTGCTACGTGCGTTCCATTCCATTAGAATTGGAGTGT
CTTGATTATTGCGGGGCCACTAGGATACACGACCGAACATTGGGGAACCA
ACGAGCTGGTTCGAGTATGAATGCGAAAAAAAAACGGTTTGTCTTTGTCT
CATCCATCAACCAAGCCCTAGCCCCCCCTCTCTGAAAGGCGAACATATCT
GGCCAAGATAGTTGCGAGATTTTAAAGAGGTGGTCGTTTATTGTAGGGCG
CTGTTTGGTGGTGAACTGCTGTTGCTATTGTTGTTGTTTCAGGCGTAGTA
TTCGCCACATCCGACTGCCCTCTAAACCCCAAGCTGTCGTCATGTTCAAT
GTGCTGCATCGATAGCTGGAGCAAGACCTTGCAGCGGGGGCCCTTAAAGG
TGGACAAGAAGACTCGGCCGTGGTGGTCAGAGTGCTTGAGGGTTACCTCA
AGCCTATGCAGGAGGTAATGCTGAGAGTCGCCCCAGTAATGCAGCTCGCC
GGGCGCGAGGCCCGGGATCGTGTGAGGCTCTTACCGTTGATCATGCAGGT
AAAGGGACTATTTTGTTCCGAATCGGGAATGAGAAATGGAATTTGCTTTG
GATTTCAGCTTCTAGGGGTCGACCAAAAGTGTGCCATACCATCCATAGAT
GGGTTCTGCTGGGCGTTTCCTTCACTAGTTCGTTATGTGCTGAACTTTCG
TCATCGATCTACCGTCGATCGGCCGTGCAGAAGCATTCAGCGCAGGGGCT
AGCGATGAAATGGGTGCAAATGCCGGACGAGCGGGGGCTAGCGATGAAAT
GCGTGCAAATGCCGGACGAGACCCGTTGTCGACATCGTTCCAAAACCATA
TGCATAGCAACAGACACAACACCGACTGTCGTTTTCGAGAAGTTGTTCGC
GAAATCATCCGAGAGGGGCGTGTGTGTTGGGAATAGAATGTACCTCGGTC
CTTGCGGGTGATAGTTGCTCCTCATGGCCGCGAGGATGTACAGAGTAGCT
CGACTTTCATTTGTGGAAGTAGTATCACGAGTTATCGGCGGCGACAGGTG
GACAGAATTGGCACGCGTGCAGAAGTCTGAGAGGAGGGAGAGGGGAGAGG
GAAGCGAACGGAGAGTGAGTTTCCGCTCCTCCAAGAGGCGGAACCCGAGA
CCCCGTTGATAGCATTGAGTACTTCGTACCCCTAGGAGCCCACGCCCGTG
TTGCCCGGTGTTGGAGGCCGGGAGAGATAAGTTTAATTACCTTGATCAGA
GTCGTGCAGTCAGGCGGCGGTATGAAGCAAGATGGCGTGGTTTTGGAAGA
GATGAGAAAACATCATGCTCCATCCGATGACGTCATCACAACAAGGGATT
GATGAAGGTCAAATGACGGAAGCATGCGGGATGAGCACAGCGTCACCAGA
GCTGACAGCAGGCGGGGTGGTGATTACCCGTGAGCAAGCAGCTGGGTGGC
AAAAACCGGGATGACACGGTATTCGGGGTATTGATGCGGCGTGGATACGA
ACGGTACAATTGTACCCTACAAGATGGCATGATAACATGAAACTAACTAG
GCAAGATCATTCCACTCAATAACTAATAAACACGCCATCCGAACAACTGC
CAAACGCAGGGGCACCTTTTGGAGCTGGAGATGGCTTGCGGGACCAAAAA
CGCCAAGGAGCAACTCCAGGAGGTCCAAGAGGTCTGTTGTCGGCTTCAGA
CTGAACATCTCGTCTGACCTCTGTACTCTTCAACGCAGAGAAAAAAATCC
CGTGGTCACAAGCTAGCTAGCCCAAGAAAAAGGGTGTCAAATCTCAAACG
GGTGCGCAAGATGCTCTACTTTCTGCGATTTCCGTCAAGCAAAGTTTCGG
ACGCTTCGCGTTTGGGAGAGGGATTTGCACCAGCTCTTTACGTGCAAGCG
ACTTAATGGATCCAGGCCGCCCTGGAAGCAAGTCTTGCGTGTCATCAGCT
CGTGACTCTCTGTCTCATGTGTTTTGTTGGGCTGCCTTCTTGTCATTTTT
CGCTCTCATCAAACACGCGACCGCGGGTGTCATAAGTCAAGCTGGGGTTG
ATGTTTTGCAATTTTGTACACGGGACACGGAAGGCCGAAGGCCTGGGTGC
GAGTTTGAGTGGGCAAGTCCTTTTGTGGTAGTAGTACAGAGCAGGCATTG
GGGGTGAGAGCGTTGCTCTCCATGTCGTCGTCACTCTCCTCCTGGTCGAA
CGAACGGACAATAATCACGATGGTGATTGTCATGGTTTTCAATGCCATTC
ACGCCGCGGACCATCAATGAGGACTGCTAAACCTTCTCGAGACGAAATAG
TCTAGATGGGACGTCAGCCCTCGAAAAACACAAAAAGTGAGTACAAATAG
AAGCACTCTGCTGGCGACATGGGCTCCGTCCGTAGGCAACGTGGTTGAAG
GGCCCCAAGGTCGTGTACCCTTGGCCTAGTGAGGGCAGCCGATCTTCTCA
GGAGAAAATTGGGGAAGGGGAGATTCCATGACGAGAGTTTGCCCCACAAA
ACCCCGGAGAGATTATACCCGCTAATGCCCGCAAATGGCGTGTGGAAGAG
CCGCATATCCACGGGTGGTGTCACGAGTTCCGAGGGTTCTCAGGACGCTG
CTTCGGATCGCCTTCTCAGACACTCGAAACTCGTAGGCATAGATATCGAT
CGTCCACATTAGGGAGTTTGCTTGGCTTGTCTGTTGTCTCCATAGAGAAG
CAAGCTTTCTGTTAATTTGTTGGCTCTCACTCTCCCCTCCTGCTCGTTCT
TGTTCTTGCACCTCCTCCCCACTCTCTCTCATCCTTTCTATATACCTCTC
TCTCGGGCCCGCTTCCCCTTCCGTTCCTGCCGCCTTCCTGCCTTCTTGTT
CTCCCTTTTGGGGCAGGTGAGAGAGACCCTGGACGAGTTCATCGCCTTGG
CAAAGGTAAGCCTTGCGCGGCATGCAGGCATCAGTGTAGCACGCACTGCT
TTACGAGGCGTTCGATCTCTTGAACCTCCTCGCCCTCCCCTTCGCCGTCA
AGACAAACATTCCCATGTCATTCTAGATCTCACGTGATAATTTTTCTAGA
GGCAACGGCCGAAGCTGCAACATACGGTATGAAACAAGCTATGCTAACTG
TGGGATTCATCCACCCTTTGTTGCTTCATCACTCTTGCCTGAGCCTTGGA
AGACCTCACCGGAATCCGTAGACAGGGGCTCTTCCATTTACACCTGCAGC
ATACCTACCTACATACATACATACGGTAGTCTCCACCGCACGTTTTCTCT
CGACAAGTCCGCTATCCGAAATGTATGCAAATTTATTTTTGTACCTTCAC
ATGTGTTTCTCTTGAAGTTGTTTTTTTGTCGACCCAGGGGGTTCGTGGTA
ATGGTCGTGGTCGAAATCTTGACGAATCGAAAGGTCCGTTTGTGGATGGC
GCGGCATAAATAGGCACCTGACTTTGCTGACCGGTCGAAGGGTGACCGTG
GGCCTTAACACGATCTGAACAAAAACGAAAACAACAGCAGCAGCCGCTGC
AGCTGCTGCATCGCTCCTTGTGCAAGCATCGACGTTATCGAAAGAAATGG
GAAAGGCTGTTTGTGCCTCTTGGGTGTTCAGCTAGTGTAGTGTCTGCTGC
ACAGTGCAGAGTTGCGCTGTTGCACGGACTTCTATTTGAAGACTGGGGAT
GCTTTTGTGCTGGCTGCCGCAGCCATCGTGCACTTGGCTGGTATCTGTCG
TGATCGTGATTCGGCAACTACAACCAACGAAACGAGTCTGCTTGCAGAAT
TTCTGTAGGAAACGGCATCGAGTAACGAACGCCCGATCTCTCTCTTCCCC
CTCCCATGTCCCTCATTTGCCATGCCACGGCTGTCGCTACTGGTGCTACA
ACGGTCCACTCCGATTTCCTGGAAAGACGCGATATGAAATCCCAGACCTG
GACCCAGTACCCGCACCGGAAGGCGACCAACTCGGCATTTTCGGCTGCAG
TTTTTACGGCATGAAGGTGTGCGAGATGCATAAAAATCGTGAGGTCGATG
TGCAGAAAGGAAACGGAACGGAACAGGTGCAACGTTGCTTAAGGCCAGCG
CGGATTGCTCGGTTCATCAGATCGGAGTATGACCAAAACAATTCGCTTTT
CTCTTTCTCTTTTTGTTTTTGACAGGAGCGAGCTGTGTTGGCGGGAACGT
TCGAACTTTCCTGCCTCCCTCCGATTCTGCCTTTCCCTGTGATGTACCTC
TCTGGGCCTCGATTTCCCCAACCCCCCAAGATATCAGCATCTTGAAAGCC
CCACGAACTGTGACCTATCGGCTTTCCAGACTGACACCTGCCAAACGAAT
CCGCCCTCCGCCTCCCCGACCATGACCACCCTCCTTCCTCGTGCTCCCTA
CCTTACCTCTGCATCCTCCCGCCC
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig94:68790..74513-

>mRNA_P-lacustris_contig94.15797.1 ID=mRNA_P-lacustris_contig94.15797.1|Name=mRNA_P-lacustris_contig94.15797.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1428bp|location=Sequence derived from alignment at P-lacustris_contig94:68790..74513- (Pleurocladia lacustris SAG_25_93)
ATGGGTGCAGAGCGACCGTCTGAGCTGGCCGGTTCGAGCAGGGCAGCTTT
TCTCAAAACTGCACTCGGAGGCGCTGCTGTGCTAGCCACGATTGCCGTCA
ATGCAAAGGAGACGCTGGCGTTCGATGGGTGCAGAGCGACCGTCTGAGCT
GGCCGGTTCGAGCAGGGCAGCTTTTCTCAAAACTGCACTCGGAGGCGCTG
CTGTGCTAGCCACGATTGCCGTCAATGCAAAGGAGACGCTGGCGTTCGAG
CTAGCCCTGCCCTTCACGTCAAAAGCTGCCCCGGAACTGGAGAAGGTGGC
CCAGGTGGCGGACTACTCTAGGTTTGTCACAAGGAGCTAGCCCTGCCCTT
CACGTCAAAAGCTGCCCCGGAACTGGAGAAGGTGGCCCAGGTGGCGGACT
ACTCTAGGTTTGTCACAAGGCTGGAGCAAGACCTTGCAGCGGGGGCCCTT
AAAGGTGGACAAGAAGACTCGGCCGTGGTGGTCAGAGTGCTTGAGGGTTA
CCTCAAGCCTATGCAGGAGGTAATGCTGAGAGTCGCCCCAGTAATGCAGC
TCGCCGGGCGCGAGGCCCGGGATCGTGTGAGGCTCTTACCGTTGATCATG
CAGCTGGAGCAAGACCTTGCAGCGGGGGCCCTTAAAGGTGGACAAGAAGA
CTCGGCCGTGGTGGTCAGAGTGCTTGAGGGTTACCTCAAGCCTATGCAGG
AGGTAATGCTGAGAGTCGCCCCAGTAATGCAGCTCGCCGGGCGCGAGGCC
CGGGATCGTGTGAGGCTCTTACCGTTGATCATGCAGGGGCACCTTTTGGA
GCTGGAGATGGCTTGCGGGACCAAAAACGCCAAGGAGCAACTCCAGGAGG
TCCAAGAGGGGCACCTTTTGGAGCTGGAGATGGCTTGCGGGACCAAAAAC
GCCAAGGAGCAACTCCAGGAGGTCCAAGAGGTGAGAGAGACCCTGGACGA
GTTCATCGCCTTGGCAAAGGTGAGAGAGACCCTGGACGAGTTCATCGCCT
TGGCAAAGACGCGATATGAAATCCCAGACCTGGACCCAGTACCCGCACCG
GAAGGCGACCAACTCGGCATTTTCGGCTGCAGTTTTTACGGCATGAAGAC
GCGATATGAAATCCCAGACCTGGACCCAGTACCCGCACCGGAAGGCGACC
AACTCGGCATTTTCGGCTGCAGTTTTTACGGCATGAAGGAGCGAGCTGTG
TTGGCGGGAACGTTCGAACTTTCCTGCCTCCCTCCGATTCTGCCTTTCCC
TGTGATGTACCTCTCTGGGCCTCGATTTCCCCAACCCCCCAAGATATCAG
CATCTTGAGAGCGAGCTGTGTTGGCGGGAACGTTCGAACTTTCCTGCCTC
CCTCCGATTCTGCCTTTCCCTGTGATGTACCTCTCTGGGCCTCGATTTCC
CCAACCCCCCAAGATATCAGCATCTTGA
back to top