mRNA_P-lacustris_contig94.15793.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig94.15793.1
Unique NamemRNA_P-lacustris_contig94.15793.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
[Close]
BLAST of mRNA_P-lacustris_contig94.15793.1 vs. uniprot
Match: D7FT45_ECTSI (Spermidine/spermine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT45_ECTSI)

HSP 1 Score: 518 bits (1333), Expect = 1.900e-178
Identity = 255/286 (89.16%), Postives = 272/286 (95.10%), Query Frame = 2 
Query:  143 MFNGSSDFQQIQVVETATFGKTLVLDGKTQSAQLDEFIYHETLVHPAMLAHPNPKRVYIGGGGELATAREVLRHKSVEECVMVDLDKLVVDTSKDVLPEWGAGVLDDPRLDLHYTDAHAFLRENEGMFDVIIMDIADPIEAGPGYILYTQAREFYRFATTKLSPG-VLVTQSGAAAVHLKGECFTVIHKTLKSVFQHVAMSVADVPSFGCCWGFNLASNDNAVDTEEYRRKEPTATDFDIEARITGTLRFYDGITHGGLFGVPKWLRAAVDEEERIMTIENPVFMH 997
            MFN SSDFQ +QVVETA FGKTLVLDGKTQSAQLDEFIYHETLVHPAMLAHPNPKRVYIGGGGELATAREVLRHKSVE+CVMVDLDKLVVDTS+DVLPEWGAGVLDDPRL+LHYTDAHAFLRE+E M+DVIIMDIADPIEAGPGYILYTQ  EFY+FATT+LSPG VLVTQSGAAAVHLK ECFTVIHKTLKSVFQHV+MSVADVPSFGCCWGFNLAS+ +  +TEEYRRKE  ATD DIEARITGTLRFYDG+THGGLFGVPKWLRAAV+EEERIMTI++PVFM+
Sbjct:    1 MFNASSDFQHVQVVETAPFGKTLVLDGKTQSAQLDEFIYHETLVHPAMLAHPNPKRVYIGGGGELATAREVLRHKSVEKCVMVDLDKLVVDTSRDVLPEWGAGVLDDPRLELHYTDAHAFLRESEDMYDVIIMDIADPIEAGPGYILYTQ--EFYKFATTRLSPGGVLVTQSGAAAVHLKDECFTVIHKTLKSVFQHVSMSVADVPSFGCCWGFNLASDSSTFNTEEYRRKEVAATDSDIEARITGTLRFYDGVTHGGLFGVPKWLRAAVEEEERIMTIDSPVFMY 284
[Close]
BLAST of mRNA_P-lacustris_contig94.15793.1 vs. uniprot
Match: A0A836C836_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C836_9STRA)

HSP 1 Score: 390 bits (1001), Expect = 3.250e-127
Identity = 198/324 (61.11%), Postives = 238/324 (73.46%), Query Frame = 2 
Query:   56 PANAFSTSSIWLQEEVTEDLEMRSRLNKIMFNGSSDFQQIQVVETATFGKTLVLDGKTQSAQLDEFIYHETLVHPAMLAHPNPKRVYIGGGGELATAREVLRHKSVEECVMVDLDKLVVDTSKDVLPEWGAGVLDDPRLDLHYTDAHAFLRENEGM-FDVIIMDIADPIEAGPGYILYTQAREFYRFATTKLSPG-VLVTQSGAAAVHLKGECFTVIHKTLKSVFQHVAMSVADVPSFGCCWGFNLASND--NAVDTEEYRRKEPTATDFDIEARITG-------TLRFYDGITHGGLFGVPKWLRAAVDEEERIMTIENPVFM 994
            P +   TSS W  E+VT+D+  + RLN IM+NG S FQ+IQV++ A FGKTLVLDGK+QSA  DEF+YHE LVHPAML H NPKRV+IGGGGE ATARE+LRH+SVE+C+MVDLDK+VVD SKD LPEWGAG  DD RL+++Y DAHA+LR+ +G  FDVI MDIADPIEAGPGY+LYT+  EFYR+ATT+L+ G ++VTQSG  +++   ECFTVIH+TL S F+H      DVPSFGC W F LA N    A D          ATD  I ARI G        LRFYDG  H G+FG PKWLR A+D E R+MT++NPVFM
Sbjct:   37 PESVAMTSSFWFSEDVTDDMVTKFRLNNIMYNGKSQFQRIQVIDCAPFGKTLVLDGKSQSAAGDEFVYHEALVHPAMLLHGNPKRVFIGGGGEGATAREMLRHRSVEKCIMVDLDKMVVDVSKDKLPEWGAGCWDDDRLEVYYQDAHAWLRDYKGPPFDVICMDIADPIEAGPGYVLYTE--EFYRYATTQLAEGGIIVTQSGPGSLNTHEECFTVIHRTLASAFKHAVPYTVDVPSFGCTWAFTLAFNACAGAADAAAVVEMSVAATDAAIAARIGGGGSSGSSALRFYDGAAHLGMFGTPKWLRRALDAERRVMTVDNPVFM 358
[Close]
BLAST of mRNA_P-lacustris_contig94.15793.1 vs. uniprot
Match: A0A7S2V6Z8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6Z8_9STRA)

HSP 1 Score: 377 bits (968), Expect = 5.210e-123
Identity = 191/310 (61.61%), Postives = 231/310 (74.52%), Query Frame = 2 
Query:   74 TSSIWLQEEVTEDLEMRSRLNKIMFNGSSDFQQIQVVETATFGKTLVLDGKTQSAQLDEFIYHETLVHPAMLAHPNPKRVYIGGGGELATAREVLRHKSVEECVMVDLDKLVVDTSKDVLPEWGAGVLDDPRLDLHYTDAHAFLRENEGMFDVIIMDIADPIEAGPGYILYTQAREFYRFATTKLSPG-VLVTQSGAAAVHLKGECFTVIHKTLKSVFQHVAMSVADVPSFGCCWGFNLASNDNAVDTEEYRRKEPTAT-DFDIEARITGTLRFYDGITHGGLFGVPKWLRAAVDEEERIMTIENPVFMH 997
            TSS W +EEVT +  M  RL KI+ +  S+FQ++Q++ET  FG TLVLDGKTQSA  DEFIYHE LVHPAML HPNPK+VYIGGGGELATARE LRHKSVE  VM DLDK+VVD S + LPEW AG   DPRL+L Y DAHA+L  N+  FDVIIMDIADPIEAGPGYILYT+  EFY++A T+L+PG VLVTQSG  +    GECFT IH TLK  F  V      +PSFGC W FN+AS D+ VDT+ Y   +P    D +I  RI G L+FYDG++H G+FG PK++RAA+  ++R++T +NPVFM+
Sbjct:    2 TSSFWFKEEVTVNHAMSMRLQKIILDQQSEFQRVQIIETNEFGTTLVLDGKTQSALRDEFIYHECLVHPAMLLHPNPKKVYIGGGGELATAREALRHKSVERVVMCDLDKMVVDVSMEHLPEWNAGCHLDPRLELAYGDAHAWLLNNDEQFDVIIMDIADPIEAGPGYILYTE--EFYKYAMTRLTPGGVLVTQSGPGSNTTHGECFTAIHNTLKQAFPTVIPYTVSIPSFGCDWAFNVASIDSGVDTQAYGVGKPMGDLDEEISKRIDGELKFYDGVSHVGIFGTPKYIRAALAADKRVITKDNPVFMY 309
[Close]
BLAST of mRNA_P-lacustris_contig94.15793.1 vs. uniprot
Match: A0A2D4BNJ7_PYTIN (Spermidine synthase n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BNJ7_PYTIN)

HSP 1 Score: 368 bits (944), Expect = 4.270e-119
Identity = 179/309 (57.93%), Postives = 232/309 (75.08%), Query Frame = 2 
Query:   80 SIWLQEEVTEDLEMRSRLNKIMFNGSSDFQQIQVVETATFGKTLVLDGKTQSAQLDEFIYHETLVHPAMLAHPNPKRVYIGGGGELATAREVLRHKSVEECVMVDLDKLVVDTSKDVLPEWGAGVLDDPRLDLHYTDAHAFLRENEGMFDVIIMDIADPIEAGPGYILYTQAREFYRFATTKLSPG-VLVTQSGAAAVHLKGECFTVIHKTLKSVFQHVAMSVADVPSFGCCWGFNLASN--DNAVDTEEYRRKEPTATDFDIEARITGTLRFYDGITHGGLFGVPKWLRAAVDEEERIMTIENPVFMH 997
            S W +E +TEDL + + L ++MF  +S FQ +Q++ET +FGKTL+LDGKTQSA+ DE +YHE+LVHPA++AHPNPK VYIGGGGE ATAREVL+H SVE+ VMVD+D++V D  +  LPEW  G  +DPRL++HYTDAHAFL+E +G FDVIIMDIADPIEAGPGY+LYT+  EFY++A TKL+ G   VTQSG  A++   ECF+ IH TLK+ F  V     D+PSFGC W FNLA+N  D A      R++    TD  ++ARI   L+ YDG++H GLFGVPK +R A+D E R++T++NPVFM+
Sbjct:   24 SFWYKESLTEDLYISTTLKRVMFEAASKFQTMQIIETTSFGKTLLLDGKTQSAKXDEAVYHESLVHPALIAHPNPKTVYIGGGGEFATAREVLKHPSVEKVVMVDIDEMVCDLCRKELPEWSDGCFEDPRLEVHYTDAHAFLKEYDGTFDVIIMDIADPIEAGPGYVLYTE--EFYKYAVTKLNAGGFFVTQSGPGALYNWDECFSAIHSTLKTAFNTVLPYTVDIPSFGCQWAFNLATNATDAAATGVAIRQRPIAETDALVKARINKPLKHYDGLSHLGLFGVPKPIRDALDAETRVITVDNPVFMY 330
[Close]
BLAST of mRNA_P-lacustris_contig94.15793.1 vs. uniprot
Match: K3WN33_GLOUD (PABS domain-containing protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WN33_GLOUD)

HSP 1 Score: 363 bits (933), Expect = 1.770e-117
Identity = 179/319 (56.11%), Postives = 236/319 (73.98%), Query Frame = 2 
Query:   56 PANAFSTSSIWLQEEVTEDLEMRSRLNKIMFNGSSDFQQIQVVETATFGKTLVLDGKTQSAQLDEFIYHETLVHPAMLAHPNPKRVYIGGGGELATAREVLRHKSVEECVMVDLDKLVVDTSKDVLPEWGAGVLDDPRLDLHYTDAHAFLRENEGMFDVIIMDIADPIEAGPGYILYTQAREFYRFATTKLSPG-VLVTQSGAAAVHLKGECFTVIHKTLKSVFQHVAMSVADVPSFGCCWGFNLASN----DNAVDTEEYRRKEPTATDFDIEARITGTLRFYDGITHGGLFGVPKWLRAAVDEEERIMTIENPVFMH 997
            P  A    S W +E +TEDL + + L K+ F   S+FQ +Q++ET +FGKTLVLDGKTQSA+ DE +YHE+LVHPA++AHPNPK VYIGGGGE ATAREVL+HKSVE+ VMVD+D++V +  +  +PEW  G  +DPRL++HYTDAHAFL++ +G FDVIIMDIADPIEAGPGY+LYT+  EFY+FA TKL+ G   VTQSG  A++   ECF+ I+ TLK+ F  V     D+PSFGC W +N+A+N    D A++    R  E T  D  + ARI   L+FYDG++H GLFGVPK +R A++ E+R++T++NPVFM+
Sbjct:   14 PTLAPMERSFWYKEALTEDLYLSASLKKVTFEAQSEFQTMQIIETHSFGKTLVLDGKTQSAKTDEAVYHESLVHPALIAHPNPKTVYIGGGGEFATAREVLKHKSVEKVVMVDIDEMVCNMCRKEMPEWADGAFEDPRLEVHYTDAHAFLKQYDGTFDVIIMDIADPIEAGPGYVLYTE--EFYKFAVTKLNKGGYFVTQSGPGALYNWDECFSAIYSTLKTAFNTVLPYTVDIPSFGCVWAYNMATNHEDGDKALNAIRSRAIEET--DAIVTARIPQPLKFYDGLSHLGLFGVPKPIRDALENEKRVITVDNPVFMY 328
[Close]
BLAST of mRNA_P-lacustris_contig94.15793.1 vs. uniprot
Match: A0A6A4DP37_9STRA (PABS domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A4DP37_9STRA)

HSP 1 Score: 363 bits (932), Expect = 2.870e-117
Identity = 179/311 (57.56%), Postives = 231/311 (74.28%), Query Frame = 2 
Query:   80 SIWLQEEVTEDLEMRSRLNKIMFNGSSDFQQIQVVETATFGKTLVLDGKTQSAQLDEFIYHETLVHPAMLAHPNPKRVYIGGGGELATAREVLRHKSVEECVMVDLDKLVVDTSKDVLPEWGAGVLDDPRLDLHYTDAHAFLRENEGMFDVIIMDIADPIEAGPGYILYTQAREFYRFATTKLSPG-VLVTQSGAAAVHLKGECFTVIHKTLKSVFQHVAMSVADVPSFGCCWGFNLASN----DNAVDTEEYRRKEPTATDFDIEARITGTLRFYDGITHGGLFGVPKWLRAAVDEEERIMTIENPVFMH 997
            S W +E +TEDL + + L  + F   S FQ +Q++ET +FGKTLVLDGKTQSA+ DE IYHETLVHPA+LAHPNPK VYIGGGGE ATAREVL+HKSVE+ VMVD+D+LV +  +  LPEW  G  +DPRL++HYTDAHAFL++ +G FDVIIMDIADPIEAGPGY+LYT+  EFY++A TKL+ G  +VTQSG  AV+   ECF+ IH TLK+ F  VA    D+PSFGC W FN+A+N    D        R +    T+  IE+RI+  L+F DG++H GLFG+PK +R +++ E R++T++NPVFM+
Sbjct:   24 SFWYKEALTEDLYLSAALKTVTFEAKSKFQTMQIIETHSFGKTLVLDGKTQSAKNDEAIYHETLVHPALLAHPNPKTVYIGGGGEFATAREVLKHKSVEKVVMVDIDELVCNMCRKELPEWNDGAFEDPRLEVHYTDAHAFLKQYDGTFDVIIMDIADPIEAGPGYVLYTE--EFYKYALTKLNKGGFMVTQSGPGAVYNWDECFSSIHCTLKTNFNTVAPYTVDIPSFGCIWAFNMATNVEDGDGVAAVTAIRERSIATTNSLIESRISKPLKFLDGVSHMGLFGLPKIVRESLENETRVITVDNPVFMY 332
[Close]
BLAST of mRNA_P-lacustris_contig94.15793.1 vs. uniprot
Match: A0A024G9Q2_9STRA (PABS domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G9Q2_9STRA)

HSP 1 Score: 360 bits (925), Expect = 2.360e-116
Identity = 176/310 (56.77%), Postives = 228/310 (73.55%), Query Frame = 2 
Query:   77 SSIWLQEEVTEDLEMRSRLNKIMFNGSSDFQQIQVVETATFGKTLVLDGKTQSAQLDEFIYHETLVHPAMLAHPNPKRVYIGGGGELATAREVLRHKSVEECVMVDLDKLVVDTSKDVLPEWGAGVLDDPRLDLHYTDAHAFLRENEGMFDVIIMDIADPIEAGPGYILYTQAREFYRFATTKLSP-GVLVTQSGAAAVHLKGECFTVIHKTLKSVFQHVAMSVADVPSFGCCWGFNLASNDNAVDTEEY---RRKEPTATDFDIEARITGTLRFYDGITHGGLFGVPKWLRAAVDEEERIMTIENPVFM 994
            ++IW +E +T +L + +   +  F   SDFQ++Q++ET +FGKTLVLDGKTQSAQLDE +YHETLVHPA+L HPNPK V+IGGGGE ATAREVL+H SVE+ VMVD+D+LV +  +  +PEW  G  +DPR ++HY DAHAFL++ +G FDVIIMDIADPIEAGPGY+LYTQ  EFY++A TKL+  GVLVTQSG  A++   ECF  IH TLK+ F  V     D+PSFGC W FNLA ND     +     R +    TD  I  R++  L+FYDG++H G+FGVPK +R AV++E R++T++NPVFM
Sbjct:   15 NAIWYRETITPELYLSTACTRFAFEAQSDFQKMQIIETRSFGKTLVLDGKTQSAQLDEMVYHETLVHPALLCHPNPKTVFIGGGGEFATAREVLKHNSVEKVVMVDIDELVCNLCRKEMPEWNDGAYEDPRTEVHYADAHAFLKQYDGTFDVIIMDIADPIEAGPGYVLYTQ--EFYQYAQTKLNKNGVLVTQSGPGALYNWHECFASIHATLKTAFSTVLPFTVDIPSFGCVWAFNLALNDQDGGEDAVSLIRERCAKDTDVLIADRLSKPLKFYDGVSHKGIFGVPKAIREAVEKETRVITVDNPVFM 322
[Close]
BLAST of mRNA_P-lacustris_contig94.15793.1 vs. uniprot
Match: A0A484DTM6_BRELC (PABS domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DTM6_BRELC)

HSP 1 Score: 360 bits (924), Expect = 3.820e-116
Identity = 181/326 (55.52%), Postives = 234/326 (71.78%), Query Frame = 2 
Query:   35 EKPGEKGPANAFSTSSIWLQEEVTEDLEMRSRLNKIMFNGSSDFQQIQVVETATFGKTLVLDGKTQSAQLDEFIYHETLVHPAMLAHPNPKRVYIGGGGELATAREVLRHKSVEECVMVDLDKLVVDTSKDVLPEWGAGVLDDPRLDLHYTDAHAFLRENEGMFDVIIMDIADPIEAGPGYILYTQAREFYRFATTKLSPG-VLVTQSGAAAVHLKGECFTVIHKTLKSVFQHVAMSVADVPSFGCCWGFNLASN----DNAVDTEEYRRKEPTATDFDIEARITGTLRFYDGITHGGLFGVPKWLRAAVDEEERIMTIENPVFMH 997
            +KP    PA        W +E +TEDL M   L  I F   S FQ +Q++ET +FGK LVLDGKTQSA+ DE IYHE LVHPA+L HPNPK VYIGGGGE ATAREVL+HKSVE+ VMVD+D+LV +  +  +PEW AG  +DPRL++HYTDAHAFL++ EG FDVIIMDIADPIEAGPGY+LYT+  EFY++A+TKL+ G  +VTQSG  AV+   ECF+ I+ TLK+ F  V     D+PSFGC WGFN+A+N    D A      R +   ATD  +++RI   L++ DG++H GLFG+PK +R A++ E R++T++NPVF++
Sbjct:    8 KKPAMLAPAEKL----FWYKEAMTEDLYMAVALKTITFEAKSSFQAMQIIETNSFGKMLVLDGKTQSARSDEAIYHEALVHPALLNHPNPKTVYIGGGGEFATAREVLKHKSVEKVVMVDIDELVCNMCRKEMPEWSAGAFEDPRLEVHYTDAHAFLKQYEGTFDVIIMDIADPIEAGPGYVLYTE--EFYKYASTKLNKGGYMVTQSGPGAVNNWDECFSSIYCTLKTSFNTVVPYTVDIPSFGCVWGFNMATNVDNEDGAAVLTSIRERSIAATDALVKSRIRQRLQYLDGVSHMGLFGLPKIVREALESETRVITVDNPVFLY 327
[Close]
BLAST of mRNA_P-lacustris_contig94.15793.1 vs. uniprot
Match: F0WPF1_9STRA (Spermine synthase putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WPF1_9STRA)

HSP 1 Score: 358 bits (920), Expect = 1.320e-115
Identity = 178/310 (57.42%), Postives = 228/310 (73.55%), Query Frame = 2 
Query:   80 SIWLQEEVTEDLEMRSRLNKIMFNGSSDFQQIQVVETATFGKTLVLDGKTQSAQLDEFIYHETLVHPAMLAHPNPKRVYIGGGGELATAREVLRHKSVEECVMVDLDKLVVDTSKDVLPEWGAGVLDDPRLDLHYTDAHAFLRENEGMFDVIIMDIADPIEAGPGYILYTQAREFYRFATTKLSP-GVLVTQSGAAAVHLKGECFTVIHKTLKSVFQHVAMSVADVPSFGCCWGFNLASNDNAVDTE---EYRRKEPTATDFDIEARITGTLRFYDGITHGGLFGVPKWLRAAVDEEERIMTIENPVFMH 997
            +IW +E +T +L + + L +  F   SDFQ +Q++ET +FGKTLVLDGKTQSAQ DE IYHETLVHPA+L HPNPK VYIGGGGE ATAREVL+HKSVE+ VMVD+D+LV D  +  LPEW  G  +DPR +++Y DAHAFL++ +G FDVIIMDIADPIEAGPGY+LYTQ  EFY++A TKL+  GVLVTQSG  A++   ECF  IH T+K+ F  V     D+PSFGC W FNLA ND+    +     R +    T+  I  R++  L+FYDG++H G+FG+PK +R AV+ E R++TI+NPVFM+
Sbjct:   16 AIWFREGLTPELYISAALKRTTFEAKSDFQTMQIIETHSFGKTLVLDGKTQSAQSDEMIYHETLVHPALLCHPNPKTVYIGGGGEFATAREVLKHKSVEKVVMVDIDELVCDMCRKELPEWNDGAYEDPRTEVYYADAHAFLKQYDGTFDVIIMDIADPIEAGPGYVLYTQ--EFYQYAQTKLNKNGVLVTQSGPGAMYNWNECFASIHATMKNSFNTVVPFTVDIPSFGCMWAFNLALNDDECGEKAVTSIRERCAKDTNTLIADRLSKPLKFYDGVSHLGIFGLPKPIREAVENETRVITIDNPVFMY 323
[Close]
BLAST of mRNA_P-lacustris_contig94.15793.1 vs. uniprot
Match: A0A3R7KTL5_9STRA (PABS domain-containing protein n=18 Tax=Peronosporaceae TaxID=4777 RepID=A0A3R7KTL5_9STRA)

HSP 1 Score: 360 bits (925), Expect = 1.960e-115
Identity = 176/310 (56.77%), Postives = 231/310 (74.52%), Query Frame = 2 
Query:   80 SIWLQEEVTEDLEMRSRLNKIMFNGSSDFQQIQVVETATFGKTLVLDGKTQSAQLDEFIYHETLVHPAMLAHPNPKRVYIGGGGELATAREVLRHKSVEECVMVDLDKLVVDTSKDVLPEWGAGVLDDPRLDLHYTDAHAFLRENEGMFDVIIMDIADPIEAGPGYILYTQAREFYRFATTKLSPG-VLVTQSGAAAVHLKGECFTVIHKTLKSVFQHVAMSVADVPSFGCCWGFNLASN---DNAVDTEEYRRKEPTATDFDIEARITGTLRFYDGITHGGLFGVPKWLRAAVDEEERIMTIENPVFMH 997
            S W +E +TE+L + + L  I F   S FQ +Q++ET +FGKTLVLDGKTQSA+ DE IYHETLVHP+MLAHPNPK VYIGGGGE ATAREVL+HKSVE+ VMVD+D+LV +  +  +PEW  G  +DPRL++HYTDAHAFL++ +G FDVIIMDIADPIEAGPGY+LYT+  EFY++A TKL+ G  +VTQSG  AV+   ECF+ I+ TLK+ F  V     D+PSFGC W FN+A+N   D  V   + R +    T+  +E R++  L+F DG++H GLFG+PK +R A++ E R++T++NPVFM+
Sbjct:   79 SFWYKEALTEELYLSAALKTITFEAKSKFQTMQIIETHSFGKTLVLDGKTQSAKNDESIYHETLVHPSMLAHPNPKTVYIGGGGEFATAREVLKHKSVEKVVMVDIDELVCNMCRKEMPEWADGAFEDPRLEVHYTDAHAFLKQYDGTFDVIIMDIADPIEAGPGYVLYTE--EFYKYAQTKLNKGGFMVTQSGPGAVYNWNECFSAIYSTLKTSFNTVVPYSVDIPSFGCVWAFNMATNVDHDGDVAVTDIRERRIAITNELVETRLSKPLKFLDGVSHMGLFGLPKVVREALENETRVITVDNPVFMY 386
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig94.15793.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT45_ECTSI1.900e-17889.16Spermidine/spermine synthase n=1 Tax=Ectocarpus si... [more]
A0A836C836_9STRA3.250e-12761.11S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A7S2V6Z8_9STRA5.210e-12361.61Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A2D4BNJ7_PYTIN4.270e-11957.93Spermidine synthase n=2 Tax=Pythium insidiosum Tax... [more]
K3WN33_GLOUD1.770e-11756.11PABS domain-containing protein n=2 Tax=Pythiaceae ... [more]
A0A6A4DP37_9STRA2.870e-11757.56PABS domain-containing protein n=6 Tax=Phytophthor... [more]
A0A024G9Q2_9STRA2.360e-11656.77PABS domain-containing protein n=1 Tax=Albugo cand... [more]
A0A484DTM6_BRELC3.820e-11655.52PABS domain-containing protein n=1 Tax=Bremia lact... [more]
F0WPF1_9STRA1.320e-11557.42Spermine synthase putative n=1 Tax=Albugo laibachi... [more]
A0A3R7KTL5_9STRA1.960e-11556.77PABS domain-containing protein n=18 Tax=Peronospor... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig94contigP-lacustris_contig94:41986..55974 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score521.9
Seed ortholog evalue2.1e-145
Seed eggNOG ortholog2880.D7FT45
Preferred nameSPS1
KEGG koko:K18787
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0008150,GO:0009888,GO:0009914,GO:0009926,GO:0009987,GO:0010087,GO:0010089,GO:0010487,GO:0010817,GO:0016740,GO:0016765,GO:0016768,GO:0030154,GO:0032502,GO:0044424,GO:0044464,GO:0048759,GO:0048856,GO:0048869,GO:0051179,GO:0051234,GO:0060918,GO:0065007,GO:0065008,GO:1905177
EggNOG free text desc.spermidine synthase activity
EggNOG OGsCOG0421@1,KOG1562@2759
Ec32 ortholog descriptionspermidine/spermine synthase
Ec32 orthologEc-04_002790.1
EC2.5.1.79
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons7
Model size2049
Cds size993
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817367.6628447-UTR-P-lacustris_contig94:41985..430341622817367.6628447-UTR-P-lacustris_contig94:41985..43034Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig94 41986..43034 -
1693495011.295103-UTR-P-lacustris_contig94:41985..430341693495011.295103-UTR-P-lacustris_contig94:41985..43034Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig94 41986..43034 -
1622817367.7519848-UTR-P-lacustris_contig94:55967..559741622817367.7519848-UTR-P-lacustris_contig94:55967..55974Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig94 55968..55974 -
1693495011.3923967-UTR-P-lacustris_contig94:55967..559741693495011.3923967-UTR-P-lacustris_contig94:55967..55974Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig94 55968..55974 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817367.6731987-CDS-P-lacustris_contig94:43034..432171622817367.6731987-CDS-P-lacustris_contig94:43034..43217Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig94 43035..43217 -
1693495011.3124738-CDS-P-lacustris_contig94:43034..432171693495011.3124738-CDS-P-lacustris_contig94:43034..43217Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig94 43035..43217 -
1622817367.685586-CDS-P-lacustris_contig94:43905..441241622817367.685586-CDS-P-lacustris_contig94:43905..44124Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig94 43906..44124 -
1693495011.3233767-CDS-P-lacustris_contig94:43905..441241693495011.3233767-CDS-P-lacustris_contig94:43905..44124Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig94 43906..44124 -
1622817367.6968405-CDS-P-lacustris_contig94:44549..447441622817367.6968405-CDS-P-lacustris_contig94:44549..44744Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig94 44550..44744 -
1693495011.3327575-CDS-P-lacustris_contig94:44549..447441693495011.3327575-CDS-P-lacustris_contig94:44549..44744Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig94 44550..44744 -
1622817367.7097259-CDS-P-lacustris_contig94:48685..487781622817367.7097259-CDS-P-lacustris_contig94:48685..48778Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig94 48686..48778 -
1693495011.3474588-CDS-P-lacustris_contig94:48685..487781693495011.3474588-CDS-P-lacustris_contig94:48685..48778Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig94 48686..48778 -
1622817367.720323-CDS-P-lacustris_contig94:49943..500751622817367.720323-CDS-P-lacustris_contig94:49943..50075Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig94 49944..50075 -
1693495011.3579648-CDS-P-lacustris_contig94:49943..500751693495011.3579648-CDS-P-lacustris_contig94:49943..50075Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig94 49944..50075 -
1622817367.730844-CDS-P-lacustris_contig94:53952..540431622817367.730844-CDS-P-lacustris_contig94:53952..54043Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig94 53953..54043 -
1693495011.3689249-CDS-P-lacustris_contig94:53952..540431693495011.3689249-CDS-P-lacustris_contig94:53952..54043Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig94 53953..54043 -
1622817367.7413137-CDS-P-lacustris_contig94:55887..559671622817367.7413137-CDS-P-lacustris_contig94:55887..55967Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig94 55888..55967 -
1693495011.3790462-CDS-P-lacustris_contig94:55887..559671693495011.3790462-CDS-P-lacustris_contig94:55887..55967Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig94 55888..55967 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig94.15793.1prot_P-lacustris_contig94.15793.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig94 43035..55967 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig94.15793.1

>prot_P-lacustris_contig94.15793.1 ID=prot_P-lacustris_contig94.15793.1|Name=mRNA_P-lacustris_contig94.15793.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=331bp
MSDARSAVGEKPGEKGPANAFSTSSIWLQEEVTEDLEMRSRLNKIMFNGS
SDFQQIQVVETATFGKTLVLDGKTQSAQLDEFIYHETLVHPAMLAHPNPK
RVYIGGGGELATAREVLRHKSVEECVMVDLDKLVVDTSKDVLPEWGAGVL
DDPRLDLHYTDAHAFLRENEGMFDVIIMDIADPIEAGPGYILYTQAREFY
RFATTKLSPGVLVTQSGAAAVHLKGECFTVIHKTLKSVFQHVAMSVADVP
SFGCCWGFNLASNDNAVDTEEYRRKEPTATDFDIEARITGTLRFYDGITH
GGLFGVPKWLRAAVDEEERIMTIENPVFMH*
back to top

mRNA from alignment at P-lacustris_contig94:41986..55974-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig94.15793.1 ID=mRNA_P-lacustris_contig94.15793.1|Name=mRNA_P-lacustris_contig94.15793.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=13989bp|location=Sequence derived from alignment at P-lacustris_contig94:41986..55974- (Pleurocladia lacustris SAG_25_93)
AACTGCCATGTCCGATGCTCGCTCTGCAGTCGGGGAGAAGCCAGGCGAGA
AGGGCCCCGCCAATGCTTTTTCCACCAGCTCCATCTGGTGAGATTTTCCT
AGATTAATTCGCCGCTTCCCCAACAGCCAGTGACAATCAGTAACAATTAG
TGACAATCAATGAGAATGTGCTTGGCAGGACGAGGACACATGAAATGTAC
ATACTGCTGCGCCGAGCAAGCGCGAGGCGAGGCGCACCCTTCTTTGCTGA
CCACCGTCTGCATCATGTGCGGGACTTCAGTTGTCATGTTCGTCCTCGCT
TTGGCCTCACCTCGCCCCAGCCAGGTGGGAACGAAAGCTCTTGACTCCAC
GCATGAACATATGTACAGTTCAAGAGGAAGAACTCGTAGAACTAGGCTTG
GCTTTTCTTGGAGCGGCCATCGGGGCGTTCGCCACCGCGAAGAGGCTGAG
TTATACTTTCAAGAAAAAACACGTTGTTTGCCAACACACTCTGTAGTAGT
CAGAAAAAACGCGTGTGATTAGAGTTATCCACTGAAGGGATTGTTTCCGA
GCACATTAGAGTAGTGACATGGGCTGTGCTGAGATCAGGCAGGGGGGGCG
GACCCAACCACTGCTGTAGCATGTAAATATCGAGCGTGTCCGCTCTCGTA
TGTTGACTCACGTTTATCACTCAGCTCGCTCTCTCTTCTTCGCTCGGTAT
CTCCGGTGCCCACAACTGAGAACGTGGGTTTGAAACGATATATCATGTAT
GTAGGACGGGCTGGGGACTATTCGTGTCTAACCCATCAACACTTTCCTAA
TTTGTTTGTGGCATCAGATATTTACCCGCCACAATATCTGGATCCTGGGA
GACAAAATCGCACAAAATGCCGTAACAGTAGTTGTTGGTTGCTCGCCAGT
AGCTTATTTTAGCCAATCGCACGACGTGGTTCGGCCCGCACCTGCTGTTC
ACCCAACATGCAAACACTAGTATGATTTGTGATTTGGTCATTCCTTTTTC
GCAGAGGGAGGGGAGAGAGAGTTAGAGAGCGAGAGGCACACAAAAGGCGA
TGCGACGTAGATTGCCAGGCGCCAGGTGATGCTGTGCTCACCCCTTGGCC
ACATATCTGGTCACTCTTTCCGTGTATTCAGTGGTCTCTTCCCTCAATAT
ATCCACACGAACTAACGCTTTCCTTTCCACTGCTGTCAAATACGACGAGA
GAAAACACTCAAAAGTGGGTGGTTTTTGGTCGATCATGTACTGCAGTATC
CCTTGTTTTCCTATTCCAATTGGTGGGCTTTGGCGTTGCGGAGTTCAACA
CACTCCACCGGCTGTCTTCGAGGGCAGGGTTCGAAACACTCGGGTAGACC
CCTGCAGCTCATCCTGAAGGGCTTGAACCATACAGCACTGCTGTTAACAC
AGGGCCATGCACCCAGATCAAGATTTAGAACTAAGCGAGGTGATCCGAAG
GTAATGATGCGCCCATGCTCACAACTGATGTCAGCATGTCATAAACAAAG
ATACATGAACGTTTGCTCTTCTGGTCGAGCCTTTCACCGAGGAAAGGACC
GCAAAGCACGACCAGGCAGGCACAAAGAGCTGCTACTGCTTCTGCTACAT
AGCTGCTGCTCTACTATATTTTTCGTTTTTCAAGCAAGCTTGTCTCACGC
CGCCTCCCCCCTCTCGGAGACAGATCTCTCCCTGAAAGTAAACAACAACA
TCGGTTGAAATAAATAAGTCTCGTCCTGCCCTACTACTGCTGTAATTTCG
GAGCGCCAAAACCTACATCTGTGTTACTGGTTCACGGTGTGTGCTTGGGT
GCTCTCTCTCTATACTATATCTCACGTAAAACGTATGGCATGGTACATAG
CGTAGGGTATCGCATTGTAAAACGATATACGGAGTAATTTCGAACGTAAC
CCGATCGATCTGTTGCGTCGATGGAATGAAGGCTCCAGGAAGAAGTTACT
GAGGATCTGGAGATGAGGTCAAGGCTCAACAAAATCATGTTCAATGGGTC
TTCCGACTTCCAACAGATCCAGGTGAACGTCTTTTCTTTCGTACAAGCAG
TATGGTAGCATATGATTGGCCATCGAAAAGGCGACGTGACAGCCTCTCAG
CGCGACAACAATTTGCAAGGACGATTTCTCGTACGCAGAGTCCTTCCTGT
GTTTTTGTGCGTGTGTGTTTTTCTCTTCCTGGGTTCGCATGGACGGCGCT
CACGGGCTCACTTCTGACATTATGTCAGCGGCAGCCAATAAAAGGATGGG
CGTCGCTGGTTGTGTTTCTCTAATGAGCGGACAGCGCCAACCGGCTTACC
ATCGAAAAATACGCCTAATAACTGTCTAGTGTAACTTGAAGAAGCCGAAA
ATGACCCATTAGACTAGAAATAACTCCGCAGGCTCCTCTCGCATGGGGGG
GGGCTAGGAGGAGATTGGTTGCGTGTGTGTTGCTTTCATTTGCACCATCC
CCGCTTATCGTTAGGCAGAAGATATTATTTTATGGCTTGGGCCGTTTCTT
ATAGAGACGGATTCTTGAAACGAAAAAGGGCAAAATCCGTTTTTGGGCCA
GGAGCCGTTTCTTATAGAGACGGATTTGTGCCTTTTTCGTTTCAACAAAA
TCCGATTTCAAGAATCCGTGCGAGGTTGGGACGAATTCTAGGGCAGAATC
CGTCTCGGATCCCACACGGATTCTTGAAACGAAAAAGTTCGACAGTCTCG
GGGCACATTGTCATTGGTCAGCCGGTTAGCGCGGTCGACCCTAATTCCTG
AAACACACACACGCACACGTATGTCTATCTCCCAGCAGTGCGTGCTTAAG
CGCCAGCGCTTGTAGGCCTGCTGGGCGTCACCTGTGGCCTAGGCAACGCA
CTTGTTCTGACCGCGGGTTGCGTGGTTCATCAACAACAGCTACAAAACGG
ACTCTGCACCACCACCGAGCTCTCGCTACACACAATGCCCATGCCCCCCA
CAACTCGCCATGCCCACATATATCACAATGGATAACACGCTCGAAGTAGT
TTGGATGCGATCGGTGCCCCGTTGGCCGAGAACCGGGTGACGGTGTGTGC
AGTTTGTGTTGCTGTTGCTGCCCACAGGCCACAGGCGCCAGGTGAAAAAA
AATTCAATGGATTACTTCTGCATCACCACCGAGCTCTCGCTACGCACGAT
GCCCATGCCCCCCACAACTACCACATCCATAGATATCACAATGAATAACA
CGCTCGAAGTAGTTTGGTTGCGATCGGCGACCCAGGGGCCGAGAACCGGG
TGACGGTGTGCTGTTTGTGCTGCTTGAAGCTGACCTCGGGCCAATGGCCC
CTAAAACTATTTTCTGACTTGAAAATCCGTTTGCTATAAGAAAGGCAGCT
TGTCCGCCCAGGTGAAAAAAATTGAAAACGGATTTTGCTCTTTTTCGTTT
CAAGAATCCGTCTCTATAAGAAACGGCCTTAGTACCGAAACCTGGGGATC
CACGAAAAAGTGTGCGCGTGTGTGGCAACGGGTTTGTGACGTAGTCATGC
GCTAGGGTTCATATACAATAGATGCAAACTTATTCTGGCAGGTCGTATAC
CCTACGGATCCATTTATATATTATCTGAGGTTTTTGCATCCGCGGAAAGG
AGTCGAATGTGTTTTGTTCATGTGAGGCCGATTCTTTCGCGTAGGAATTT
CAAGATATTGGTACGCGGGGGCGTCAAATGTGTTTCTGGGATATGTGGTC
CGTTGTTTGTTGTTGTCGTCGTCACATTAATAACCGTCCCGGCCTCTGGT
CAACACCCCCCATCATCCGTACGCCAACTGACTCGAATCCGTGCACAACA
ATTGTCCAGTCTACATTTCATGCGATCACTTACACAAAGAATGTTGTAAC
CCGTGAAATAACGCTGAACATGGTCGCCACTTCGAGCGACTTCGATACAA
GTAGTATAGCTGCAGAGTATCTTCCGGGCTAATACAACATTTTCGGCCAA
AATTACCCTGAATCGCCCGAATTCCCGCCCACTCGTAGTCGTGCTTGCCA
AACGAATCAGCTGGCAATCGGTTACCCGTTTGAGACTCCTTTTCTTCGCC
CTTGTGACGTATGCTGCTTTTTGTGATCACCACCAGTCGTGTGCGTGTGC
GTCTTTGTAGATGCGCGTGAAAAAAGGAAGAAAAATCTGCGGACAACCTG
CGAAAATTATGCGAAAAATTGCGAAAAATTCGCCCGGGCAAATCATTTTT
TTCTGTGTGATTCTGTCGTTGTGTGAGCGAAATAGACCCACATTCGGATT
CATGACGTATCGAAATCAGCACCGATCGATGAAACTACGGGCCCGCACTG
ACGGGCTAACGTATCTCTAGGTGTTGCTGCTCGATTCATGGCAAACCGTT
GCGAAATGGGCGAGCGAGGTCGCTAAACGTGTGTGTTAGATGGGTAGTAC
AGACATGCGGAGGAAGGACACCTATCTCCACACCAGCCCGTTGCCCCCAG
CCACTCCCCCTTGTCATTTGTTGGACCACCGCGCAGTCAATACTGTGTTA
CTCACAGCACCACTCTTCCCTATAGTATTCTTGGAGGTTCGTCCACCGCT
CCTTGTGTCTTGTCGCTCGTTGTCGCGAGTGCTGTGTGCTGTTCAGCTGA
CAGAGTTCCACAGCAATGCGGTACCACAGCAGGTAAGTGTAATCGCTCCA
TCACCAGCCCACGCTGTGTAGAGCGGCACACACAGTACTACTCTACCCTA
TAGTACGCGTTGAGATACCTACACAGTCCCGTGGCCCGTCGAACGGCGGT
GTGGTGCTATCCTGCAAAGGTCGTGGTCATGGCACCGGGTCAACAGCAGG
GCGAAAACAAATTCGCAATCGGAAGCGAGCAGACTAGTATCACTGCATGC
CAGCACCATGTTGGAATAGGTCTGATGTGGGCACTATCCGTCGATAGTGT
GCAGAGATGCTCACAGAGACTGTGACGTACACTTGCTTTAAAGTGGAGAC
CAGGATAAACGATGTTTTAAAGTGGCGCTTAGGTGACCAAGATACAAGAA
GAAGAGGGGGAGCCTTCATCTTTATCTCGGGAAGAAGCACACACGGGCTA
TCTATTGTATTGTACATTAGTGACACAAGAAGATATCCCGACCTTTAGCA
ATTATACTAGAAATTCCTATAGGATACGCCAATTACTGTACATGTAAGTC
GATAGAACAAGGTCTTACCTTCTCAGCGTTCTGCTGGTATTCAGAGGATA
GTACATTTTTCCGATCAAGCTGTCCGAAGATCTGCCGAAGGTAACTACTG
CACGATTTTACTTCATATGACTGATACAGTGTATTGACGACTTCCAACAC
ACCACCGCTTCAGAGCGGCACAGTCCTGCTGCCAGGACTGCTGCTGTGAC
TGTGACTGTGACTGTGCCCAATAGCAACGAAGGCACGGCTTGACACAGCT
AACACAGCTAATTGAGAAGCGAACAGCGCGGACCATTGACGCACATCCGC
TGCTTGGCGACTTTCCAGTAAGTCATTCTTGTAAGACTAAGACTACACGG
CTTCGGCGGTGAGGGGACGACCTGAGGACTGATTGGACGACCCGAGGACT
GATTCATTGAATTAATTCATGGCTTGATTGAGTCGGGTCGGGGCCTAGGG
TGCTCTTTTGCATTTTTTTTTTTGAGCAGCCAATGCTGAACACATCCGAT
GCTTGGCTGACAACACGATCCATTTTTACTGCGTTTCGTTGGCATGTCAG
ATCCGACGTTAGAGAATGATGGCCCCGAGTTGGTGGCCTGTTGCCTCTTG
TGGAAACGGTGCCCCTCAGGGAGAATGTCGGCTGGGACGCTCAGCGGTTA
AAAGGAGCACCGCAAATCAGCTGTGCAGCAAAGCCCCGATGCTACTGCTG
CTGGAGTCACATAACCCGACTATTTTGGTTTTCTGTGGTGCTGTTGCAGG
TAGTGGAAACCGCGACATTCGGGAAGACACTCGTCCTGGACGGGAAGACA
CAGTCCGCGCAGCTGGACGAGTTCATCTACCACGAGACGCTGGTGCACCC
GGCAATGCTGGCGCATCCCAACCCCAAGCGGGTGAGCTTGGGGTTTTCCA
TCGACGTCACAAATCTAGTTCTCGTGAGGGAAATTTTCTTGGAAAGCAGA
CGTGGTTTTTCGTTTTTTCCTTCTTCGCGGGCTGGATGGTGGTTGTTTTA
AGGTTGTCGTTGTTTAATTCACAACGGCTGGAAACACTTTCAACCACACA
CAGTTGAGCGGATACTTCGAACTGCAATACGGCAGGAGCACTGTACTTTG
AGGGGGCGCTGGGGCGGGGGGGTGGGGCGAAAATCAAGCAACACCCGGGT
TACACCTAGCACAAAAATTGCCTCTTTTTTTGTGACCAAAAGTTCATAAG
CACGGAGCCCCCGTGCCCAAAAAACAACCTGGGATGAGCAGTTATTCTTG
AACAGCTCCGGCTGTAGTTGCGATCCAAAATTCGGGCGAGTAATTCTGGA
ATCTGTGAGGAATAGCCTACACGTTGGTATCATCGCGAGCCCGCTTAGAT
CAAGAAAAATTTGGCGGGCAACGCGCTGAAGTGTCGTTTTGCGGGCGGTA
TCTTCAGCTCTCTGGCAGGATCTCGCGCGGAAAACGAGACCAGACGGCAG
CTGCTGGGGAACTTGGGCTGTAGTTGCGATCCAAAATTCGGGCGAGTAAT
TATGACTACTCCCATAGGATATCTATGCTGTCTCCATGCGCTGGTCGATT
TTGTGCACTCCCAGGTTGGCGGGCAACCGCGTGAAGATGGCCTCTCGTGC
CGCTGCTCACTTGAATTTTGGGTCAGGGGGCCAAAAAAATAGACCCCTCC
CGAGGGGGTCTGTGATTCATATGGTCACATTTTTTTTTCGTTTCATGACG
CCTGCAACACGGGTGGCAATGGCGCGAAAGGAACACTGCTGTTTCCATCA
GCCAGGGGGGTTTCTGCGCCGGGACTCTTGTATGCTGGTACGGTAGACCG
AAACACACACGGTAAGGTATTCGCACCCACGCGGTGATTGTGCCGTCCAT
GCCCAATATACATACAACCCTGGACACCCGTATGTGGGTATAGCCTATCG
AACATATGTGCCCTCGGAAGGTTTAGTTCACCTTTCCCTTTTTGAACTGA
AGCTTTGGGATGGAGGGTACAACGAAAAATAAACCTCTGTAAACGTGAGC
TACGTTTTTCCATGCGTGTGCATGGTTATGGTCATGTTCATCCCAGGTGT
ACATCGGGGGGGGCGGAGAGTTGGCCACGGCGCGAGAGGTGCTGCGGCAC
AAGTCGGTGGAGGAGTGCGTTATGGTGGACTTGGACAAGGTAGGTGCACA
TCTATGTGTTGCCATCTCTCTCCGCCTGTCTCGATCTCTCTGTCCAGGTT
AAATCTAGCTCGGCCCTCTGCTTTTTTACCCCTGACCATAACCCTATCCG
CTTTCAATGTGTTCAATGTGCACCTTCACGTCTTTGAGTAAGTAACCAGT
AGGCGAGGCGACCCTTACATTTTCCGGGAGTCAGGTGTACTCCTCGCCTT
CTTTTATGCCTTCGTGGAGCCCGGATAAAACACATGATCGAGGTGACCAC
GGATAAAACAATACAGTGCCATAACACAAGGACTTGAGGACAAATGGGTG
CTGGTGTCAATTTCCTGTATAATAGACCCCCGTGGGGGCAACCCACGGCC
TCGACCGAAGCCCTATATTTTTTTTCCCCCGCCGCGAGAGAGTTAGTTGC
GAAGAAGACGGCACAGAGCAGCAGCGGTAAGAGGAGTAGCCAAGCTCACT
ACTACTACTACGAGTAGGCTGTGAATCGATTGGATTTGTCGATATTTTAA
ACATCGGTGTTCGGCGCAGCCGATATTCCGATACATCGGCTTCGTCGATG
TATCGTCGGCGAAGCCGAGCGAGCACAGCGAGCGGACGAGCGCTGGCGAG
GGAGCTCGCTGTGCGAGCCCCAACGGCCCCCCGGCTGGTGAGGGGCCCTG
CTGGAAGTGCCGCCGGAGGCAAAAAAATTAGGGTCATTTGGCTTCATTTC
CCTTCACAATCCGTGCGAAATTGCATACATTTCTACCCTCAGATGAGGTT
AGATTAACTCCCAATTCCACACAAACTAGACACCTAACACACACACGATA
GCATTTGTTGTGCGGAATTCTTAGCCGTGCAAATAAAGCTTGCAATCACG
TGTTTACCGTTTCCTGTTTCCCCGTTACCCGCGTCACCAGCAACAGGACA
TTCTAAGAAACATTCTTACATTCTTCAATGTTTTTCGCTTTTCGTTTTAC
AACCGTCCGTGTTTTCCGTTCATTTTGCTCAACAATTCCTTGGTGAAGTA
CGTACTATGCAAGAAGAGAACGAATAGGGCGCACGAAGAAAAATACGCCG
GCTCTCTTAACTCTCATCCACTCATCCACATTTCTTCTCGAACGCCTACC
ACATCCCTACGTGCGTCCCTCAGAGGAGGTAGGGTCGAAGAGGGGGCCCG
CATAAATAAAAACAAAATGCTACCACCCCCGCCCACAGTTTGTACATACA
TGCAGATATTCTCGCACACCACCCTCCAAGACGTCCCTGGGCTAGTTATC
GAATACGCACATAGCGTGATACATATACGGGGAGCCCTACCACAGGTCTG
GAATGCAGTCGCCCTCTTCGTATAGGCTGTAATGACCATTGCACATATAT
CGGTAAAATATCGGCAAAATATCGGTAAAATATCGGCCCAATTTATCGAT
ATCGATATCGATTTAAATCGATGCGATGTATCGGATGAATCGGTATCGAT
TCACAGCCCTAACTACGAGACAGTAAAAAGGCGGACAAGACTTCGAAGAA
GTCTAAAATGAGCAGCAGTACGCAAAGCGGACGGCTCACCACTGCTACAA
ACTGTAGCAGACGACAGAAACTCCGGAAAAATTTGTTGCGCCATGCACCA
AAGCTATAGCCGATGACGGGGGGTGGTATCTCGCGTCATATTTGCAAAAA
CTGCGAACAGGGTAAAGAAAATCGATATGGTCGGTCGGGTTGTCTTCATT
CTTATTTCTTGCAAAGGCGCTGCAGAGGTCACGTATGCACGTGTTCAAAA
TGTCGAGACCGTTCAACAAGATGGCGACTAGTTACGCACACTAGCGTCTA
CGCTTCAAGATGCTCACCACAGGCTGTGAGAGAGAGACAATTCTGAGGAC
ATGCGCAGCGAGCCCTACTCAACAGACGAATGACAAACAATGGGCCCGTC
AGAGAGTTTTGAGGGATTCAAATATCCAGTTCTGATAGATGTAAAAAGAA
GAGCCATCTGCGTGAAGCGGGGCTCTGTTCGACTCCAACTGTCCTTGAGG
GCGTCTGCGCGTGTGCCGGTATGTCTTTGGCGCATCTGATGCCTTTCATC
AAGGGGCGATCGTTATGCATGAGCATCACAATGCGCACCCGACGCCCACA
GCAGGATAAGGCATAGGTAGAGGGGAATGCTGGTGATAACAGCAAGCAGT
GAGCGGTTGTGAAGGCAGGCGTTTGAGCCTTGGTCTATGTAGCGGCACCG
TCGGATGTGGATGACCCACAGAAAAGGGAATGTCGTGGTTACAGTATATG
GTCATCGTCACGCTTAGTCGTGCGTTTGAGACTGAAAGAGGACGAAGAAC
ATCTTGGCACGAATTCCCAGAGGTCGAGCAAAAGGGCTTCCGATAACCAG
AGTGGGCAGGAGCGAGAGCGCATGTGCTTAAGATCGCGTTTGCTTCCTTG
CGGCCAGCGGCGGTACATGGATGCAAAATCAAGCAGGGCAAGCAGCAGCT
TTGTTTTATTTTTCAAGGCGACGGGGGGCGAGAATTGTGCAGTCTGCGTG
ACCGATCGAGAGACGCCATTTTCTCAAAATCTGCCGACTCACTCCAAACT
GTAGGTGCGGGGCATGCAAGTTTTGACCAAATCTCAGGGTGGAATCCGAG
AAATTGTTGATTTTGCGCGGAATTGATAGGGTTATGGAGTCGGGCTTTCA
GAGACGGTCCTCACCCGCAACTGACGAGAGGATTCATACGGCTGCTTCTA
GAGCAGGGATTTCAAAATTGGTAGTCCCCCGGTAGGAGCTTGGCGATTGG
AGAGGCCGTGCGACGCGCACATAATCTGTGTTTTTGATGAGGAACCGCCT
CGACGGCATGACCCGACGTTGCGTGTGGCTAAATGAATCGATGGGGTCAA
GAAAGTGGGGGTCAAGGTCCTATAGAGGATTTGTTTTAGACGCAACAGAC
ACTGAAACCCCTCTGAGAGGGGTTCAGAATTGTATGCATATGCATGGGTA
AGTTTGCGAACCGTCATGTCCTTCTGCGGTGCTTTATTCGGCTTCCGTGC
TTGTCCAACCGAATCAGCGAGCCAGTTCCAAAACAAAGGGCCCAAAGGAG
GAAACTCAAGCGGAAGTGTAGTATCTACACATTTACCTCTGTTGAGCAGC
AATTCGTTCGACCACATTGGCATTGCCAGCTGCTGCCATATGCGTTGTTT
TGCAGCATCCATCCGCACGAGAGATGAGTGCACTGCTCATGCGGTAGTAA
TATGCGCATCGAGAGACGATCTACAATGGCCTTTCAACAGAATCGCCAAT
AGATCACCCGAAGCCCGGGCAAACGTTCGCTCTATTTTCAGCACGTTTGA
TCTCGTCGCCGTTACTATGGTTCCCACATTCACACATGAATGCTGCAATA
GTGAATCAAACGACAGGAAAATATAACAGTGTGGCAAATCCCGTCTAATC
TAATGTAGTTGCCACGAGTCCAAGGCATAAAACCCTTCCCAGCAAATCGC
AAAACTGCTCGAATGAGGGCGGCAATTTGTCCCTACCGGCGATATATTCC
CAGTCAGAGTGGCATACATGATCGCTTAATTTATCTCGACACGCGCTGTT
GCTTATTTCTCATGAGTGTGCCCAGTTGTCAGCGGGCACTTTGTACTTCC
CTCTCTGTCTGCCATAGCGGTTGCTGTCTCATGTCCAACCCGATAACGAG
AGAAGAAATATCCCCTTTCCTCGTCATGTTCGGTGGCGGCGAGCGCCTTC
TGGCTTTTAACCCCAACTCCACAAGCACGACCCCCCCGCCCTGTCATCGC
ACATAACATTAATTTCGCTTGAGAAAAACAGTACGCCCCGTTAGTGGGAG
GCTTCTGGAGGGGCGTGGCACGGAAGTGCGTAACGAGGGCCCTCAACGTT
AATCAAACACATGGATCAGTCACCCCTCCTCACCCCTACCCCCTACTTTC
GCTTCTTTGCACGTGAATGTCGGGACCCAGTTGGTGGTGGATACCTCGAA
GGACGTGTTGCCCGAGTGGGGGGCGGGGGTGCTCGATGACCCCCGGCTAG
ATCTTCACTACACCGACGCTCACGCCTTCCTCCGCGAGAACGAGGGCATG
TTCGATGTCATCATCATGGACATCGCAGACCCGATTGAGGCCGGCCCGGG
GTACATCCTGTATACGCAGGCGAGAGTGACACTAAGTTAACTTACAATGA
TGTGTAGAACACAACAGGAATCTGTGACCGAATTAGACAGGATTAGCTCC
GTGGTCGTCGTTTGTTTTTTTCTGAATGCTTCACCTCGGTCGAGATTTTT
TTTTTTTCCACCAGTGCCCTTGGGTGGGAAAGAGAACGAAGGTGGGCGGC
GGTGGAGACAAACATGGGGTTGATTCAAGTCTTCGCCTGTCCGATGGGTC
TCCGCTTGCTGGTTTTGCTCGCTACTTGTATTTCCTCCCGTCTTTGACAC
GCACGTTACCCAAATCCCACGGGAAAACGGAATAAGAAAACCGACACACG
AAAACAAATGTGGATGAAAGCCACAACCTCACAACCCGGAGCCAAAACTG
ACAGACGGTATCAACCAAATATGAAATATATATAAAATAAAATTGTGCAG
GAATTCTACCGGTTCGCCACGACGAAGCTCTCTCCGGGGGTGTTAGTGAC
ACAGTCCGGCGCGGCGGCGGTGCACCTCAAGGGCGAATGCTTCACCGTCA
TCCACAAGACGCTCAAGTCGGTATTCCAGCACGTGGCCATGTCGGTGGCC
GACGTGCCGTCATTCGGCTGCTGCTGGGGGTTTAACCTGGCCTCGAACGA
CAACGCGGTCGACACGGAGGTATATATTTAGGGTGTGCCCGAGGTTCGAG
GAGGCGATTGACTTTTTCAGCTTAATTCTCTGTGTGGGTGTGTTTGTTTT
TTCCTCTGTGTTTCGTTTTAAGCGTGACAACGTTTAGGTTTTAGTAACCG
ACATGCTGGCCCTCTACGCCGACATGCTGGCGAGATCCAATCTTGCCTGG
CCGATCTGACCCAAGGCGCAGATTGTTTTGGTGAGCTATGCATAGCTCAT
GGCAAAAACAACTGCTTCCGACCTAGAAGCCTGTTTCAGGCGGAGGTCAG
GCTTCATGGATTATATAGGGGGGCATCTGTAGACGTTATCGTCTAACGTA
TGTGCACACACATTTGCGTTTACCGCATGTCATAGTTATCTCATTCGGCC
AGTTTTCTCAGCCTGCCTCGTTGTGCGAAGTTTCCGAATGTAATCCAGTA
TCGTAAGAATGCAACATCCATCCAACTTCCCATCCACCCGTTCATATTTT
GCCTGGTACTGATTTTGGTTGGCGTGTGACCCCTGAAGGTCAATTCTGGC
CGGTTGGATGTTTGCACGGAAAGCCGAGGTATGTACGTGGGCTTAGAGGA
CATACAGCGTTGCCCCTAGTATGAAGACGACAACAACCCCACCAACTACC
GAACAAAAACAGCGACATCGGTTGGACTCATATTTTGATGCCTTTCCGAA
CCCTAAGGAGTACCGCCGGAAAGAGCCAACAGCGACCGACTTCGACATCG
AGGCAAGAATCACGGGAACCCTCCGCTTCTACGACGGTATCACCCACGGC
GGCTTGTTCGGCGTCCCCAAGTGGCTACGGGCAGCGGTAGACGAGGAGGA
ACGCATCATGACCATAGAAAACCCCGTTTTCATGCACTGATGTGACGTGG
ACAGAATTGGGGTTGTTTTGCTTCATCCGAGCGAGAGAGACAGCGGTGGG
CGGGTGAACGGGAGTAGCGATACAAGATGGCGAGAGGGCGGGCGGGGAAA
AGGATCGATACGCCGTGAGATCGCATTGATTCGTGTCGACCGATCTCATA
ATGTTTCAGCAAGCGTCCCGAGGAAGTTGTTTGCCGCTGTTTGCCGCTGC
CGTTCTGCCGCTTCCTGGGAGAGAGTTCGGCAGCAAGAGAGAATATCGGA
GAGACGAAAGAACGGGGGCCCACCCACGAACTTCTATGTAGGTAGCCCAC
ATAAATGGTATTCGTCAAACGACATATATTTAAAGGTTGTGCGCGGCGCA
GCTGCAGCGTTGTCGACGCCACGATATACCTCCCCCTTTTCCCACTTGGA
GATGGGTCGCGCGACGACATTTACGCAGGTTTACTGGGTCGTATTTTTGC
CCGAAAGATCCGAGTGTATGAACCCGTGTTTAATTGTGTGGAATATCACC
TTTGGAAATTTTTTTATGGTTGAAAGGAGGCTAGCATCCAGAATAGATGG
GATGGAGGGGCTCCTGCGGGGGCGTTGCAAGGTTCGTGTAGGGGGAGTGG
CGGCTGTTTTGAGTAATGCTCATCATTGAGTAATGCTCAACATCTCCGTA
GCACAACATGGTGATATTCCGCCTGAGATATTGCACGTGATGAAGCTACA
AAAGTATTTGCCCCGCCTTCGCCCTTGCTTTATTTTCTGAAGGCCACTAA
GGGGTGAGTGAGAAGAATGCCTTTCGCTAGCGCGATATATTCGTGGAGAG
AAGGTAGCAATGGTTGCAAAAGCACGCGTACGTGGGCTGTTGTGATATCC
TTCCGGTTACTTTGAGGCTTCAGCTTTCGATGTAGGCCGAAGCAAGTTAA
GTTGTTATCCACAGTGGACAGCAGTAGCACAGACGTAATCGCGGGCTGCT
CTGGAGCCTCGGTCTTGGGGCAAAAAGCTACGACGAGGGCCGTTGTTGCG
GTATTTTTCAGCAGAAATGAGAACAGGCGTTTTTACCGG
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig94:41986..55974-

>mRNA_P-lacustris_contig94.15793.1 ID=mRNA_P-lacustris_contig94.15793.1|Name=mRNA_P-lacustris_contig94.15793.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1986bp|location=Sequence derived from alignment at P-lacustris_contig94:41986..55974- (Pleurocladia lacustris SAG_25_93)
ATGTCCGATGCTCGCTCTGCAGTCGGGGAGAAGCCAGGCGAGAAGGGCCC
CGCCAATGCTTTTTCCACCAGCTCCATCTGATGTCCGATGCTCGCTCTGC
AGTCGGGGAGAAGCCAGGCGAGAAGGGCCCCGCCAATGCTTTTTCCACCA
GCTCCATCTGGCTCCAGGAAGAAGTTACTGAGGATCTGGAGATGAGGTCA
AGGCTCAACAAAATCATGTTCAATGGGTCTTCCGACTTCCAACAGATCCA
GGCTCCAGGAAGAAGTTACTGAGGATCTGGAGATGAGGTCAAGGCTCAAC
AAAATCATGTTCAATGGGTCTTCCGACTTCCAACAGATCCAGGTAGTGGA
AACCGCGACATTCGGGAAGACACTCGTCCTGGACGGGAAGACACAGTCCG
CGCAGCTGGACGAGTTCATCTACCACGAGACGCTGGTGCACCCGGCAATG
CTGGCGCATCCCAACCCCAAGCGGGTAGTGGAAACCGCGACATTCGGGAA
GACACTCGTCCTGGACGGGAAGACACAGTCCGCGCAGCTGGACGAGTTCA
TCTACCACGAGACGCTGGTGCACCCGGCAATGCTGGCGCATCCCAACCCC
AAGCGGGTGTACATCGGGGGGGGCGGAGAGTTGGCCACGGCGCGAGAGGT
GCTGCGGCACAAGTCGGTGGAGGAGTGCGTTATGGTGGACTTGGACAAGG
TGTACATCGGGGGGGGCGGAGAGTTGGCCACGGCGCGAGAGGTGCTGCGG
CACAAGTCGGTGGAGGAGTGCGTTATGGTGGACTTGGACAAGTTGGTGGT
GGATACCTCGAAGGACGTGTTGCCCGAGTGGGGGGCGGGGGTGCTCGATG
ACCCCCGGCTAGATCTTCACTACACCGACGCTCACGCCTTCCTCCGCGAG
AACGAGGGCATGTTCGATGTCATCATCATGGACATCGCAGACCCGATTGA
GGCCGGCCCGGGGTACATCCTGTATACGCAGGCGAGATTGGTGGTGGATA
CCTCGAAGGACGTGTTGCCCGAGTGGGGGGCGGGGGTGCTCGATGACCCC
CGGCTAGATCTTCACTACACCGACGCTCACGCCTTCCTCCGCGAGAACGA
GGGCATGTTCGATGTCATCATCATGGACATCGCAGACCCGATTGAGGCCG
GCCCGGGGTACATCCTGTATACGCAGGCGAGAGAATTCTACCGGTTCGCC
ACGACGAAGCTCTCTCCGGGGGTGTTAGTGACACAGTCCGGCGCGGCGGC
GGTGCACCTCAAGGGCGAATGCTTCACCGTCATCCACAAGACGCTCAAGT
CGGTATTCCAGCACGTGGCCATGTCGGTGGCCGACGTGCCGTCATTCGGC
TGCTGCTGGGGGTTTAACCTGGCCTCGAACGACAACGCGGTCGACACGGA
GGAATTCTACCGGTTCGCCACGACGAAGCTCTCTCCGGGGGTGTTAGTGA
CACAGTCCGGCGCGGCGGCGGTGCACCTCAAGGGCGAATGCTTCACCGTC
ATCCACAAGACGCTCAAGTCGGTATTCCAGCACGTGGCCATGTCGGTGGC
CGACGTGCCGTCATTCGGCTGCTGCTGGGGGTTTAACCTGGCCTCGAACG
ACAACGCGGTCGACACGGAGGAGTACCGCCGGAAAGAGCCAACAGCGACC
GACTTCGACATCGAGGCAAGAATCACGGGAACCCTCCGCTTCTACGACGG
TATCACCCACGGCGGCTTGTTCGGCGTCCCCAAGTGGCTACGGGCAGCGG
TAGACGAGGAGGAACGCATCATGACCATAGAAAACCCCGTTTTCATGCAC
TGAGAGTACCGCCGGAAAGAGCCAACAGCGACCGACTTCGACATCGAGGC
AAGAATCACGGGAACCCTCCGCTTCTACGACGGTATCACCCACGGCGGCT
TGTTCGGCGTCCCCAAGTGGCTACGGGCAGCGGTAGACGAGGAGGAACGC
ATCATGACCATAGAAAACCCCGTTTTCATGCACTGA
back to top