mRNA_P-lacustris_contig93.15730.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig93.15730.1
Unique NamemRNA_P-lacustris_contig93.15730.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig93.15730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig93contigP-lacustris_contig93:256196..257014 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size819
Cds size462
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig93.15730.1prot_P-lacustris_contig93.15730.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig93 256381..256842 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817357.1237466-UTR-P-lacustris_contig93:256195..2563801622817357.1237466-UTR-P-lacustris_contig93:256195..256380Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig93 256196..256380 +
1693495002.5970187-UTR-P-lacustris_contig93:256195..2563801693495002.5970187-UTR-P-lacustris_contig93:256195..256380Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig93 256196..256380 +
1622817357.1485763-UTR-P-lacustris_contig93:256842..2570141622817357.1485763-UTR-P-lacustris_contig93:256842..257014Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig93 256843..257014 +
1693495002.615651-UTR-P-lacustris_contig93:256842..2570141693495002.615651-UTR-P-lacustris_contig93:256842..257014Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig93 256843..257014 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817357.1370685-CDS-P-lacustris_contig93:256380..2568421622817357.1370685-CDS-P-lacustris_contig93:256380..256842Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig93 256381..256842 +
1693495002.6061769-CDS-P-lacustris_contig93:256380..2568421693495002.6061769-CDS-P-lacustris_contig93:256380..256842Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig93 256381..256842 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig93.15730.1

>prot_P-lacustris_contig93.15730.1 ID=prot_P-lacustris_contig93.15730.1|Name=mRNA_P-lacustris_contig93.15730.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=154bp
MRVSSFAHSSANAVASSFAIRLPAWLLESGPPPPICGPALACCCVTVSTT
DSKRPPSSPTCRCKSPMRLASCLISAMVTNCWSSLGGGLPRPWSPCPSTE
SRSTPATESRDKGPSCCNGCCWRPESKIGSSCESPLCSATPPDIAPEGTT
RRI*
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mRNA from alignment at P-lacustris_contig93:256196..257014+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig93.15730.1 ID=mRNA_P-lacustris_contig93.15730.1|Name=mRNA_P-lacustris_contig93.15730.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=819bp|location=Sequence derived from alignment at P-lacustris_contig93:256196..257014+ (Pleurocladia lacustris SAG_25_93)
CGGCAACCGACGTCTGCTCCTTGCTACTCCCTTTCGGGTAGAACTCCAAA
ATGTCGATCCCGGCTAAGCCGCGCAACATCGGTGCCACGGCCGGAGTAAT
TTCGACGATACTACCCATGACCGCCTGAAGTTGAGGGACTGATGAACCCA
TCGAGACACCGGGCCTACCTCTGAAACAACAGAACATGCGCGTCTCTTCG
TTCGCCCACAGCTCTGCAAACGCTGTCGCTTCCTCTTTTGCTATCCGGCT
CCCTGCCTGGCTGCTCGAATCCGGACCGCCCCCCCCCATCTGTGGGCCGG
CATTGGCCTGCTGCTGCGTCACGGTTTCCACGACCGACTCGAAACGGCCG
CCGAGCTCGCCCACCTGCCGCTGCAAATCTCCGATGAGGCTGGCCAGCTG
CTTGATATCTGCCATGGTTACGAACTGCTGGTCGTCGCTCGGTGGCGGGC
TGCCGCGTCCCTGGTCTCCATGCCCATCGACAGAAAGTCGTTCGACCCCA
GCAACGGAGTCCCGTGATAAGGGGCCGTCGTGTTGCAATGGCTGCTGCTG
GCGCCCGGAGTCGAAAATTGGCTCATCTTGCGAATCGCCTTTGTGTTCCG
CCACTCCCCCCGACATCGCACCCGAAGGGACAACGAGGAGAATCTAACCA
CCGAAAAGAAGAATGTGTGAGTAGACCTTTCTTCAAGGCTATATAGGCCT
ACAAAGGTCCGTCATGGCACGCCCTCGAAAAAATGGCAGATCCGCAGAAC
GTTCTTCTGATCAGCTGATTTTTTCGAGGGCGTGCTGTTACGGAGGTTAG
GTTTGGAGCTGCAATTTGT
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Coding sequence (CDS) from alignment at P-lacustris_contig93:256196..257014+

>mRNA_P-lacustris_contig93.15730.1 ID=mRNA_P-lacustris_contig93.15730.1|Name=mRNA_P-lacustris_contig93.15730.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=924bp|location=Sequence derived from alignment at P-lacustris_contig93:256196..257014+ (Pleurocladia lacustris SAG_25_93)
ATGCGCGTCTCTTCGTTCGCCCACAGCTCTGCAAACGCTGTCGCTTCCTC
TTTTGCTATCCGGCTCCCTGCCTGGCTGCTCGAATCCGGACCGCCCCCCC
CCATCTGTGGGCCGGCATTGGCCTGCTGCTGCGTCACGGTTTCCACGACC
GACTCGAAACGGCCGCCGAGCTCGCCCACCTGCCGCTGCAAATCTCCGAT
GAGGCTGGCCAGCTGCTTGATATCTGCCATGGTTACGAACTGCTGGTCGT
CGCTCGGTGGCGGGCTGCCGCGTCCCTGGTCTCCATGCCCATCGACAGAA
AGTCGTTCGACCCCAGCAACGGAGTCCCGTGATAAGGGGCCGTCGTGTTG
CAATGGCTGCTGCTGGCGCCCGGAGTCGAAAATTGGCTCATCTTGCGAAT
CGCCTTTGTGTTCCGCCACTCCCCCCGACATCGCACCCGAAGGGACAACG
AGGAGAATCTAAATGCGCGTCTCTTCGTTCGCCCACAGCTCTGCAAACGC
TGTCGCTTCCTCTTTTGCTATCCGGCTCCCTGCCTGGCTGCTCGAATCCG
GACCGCCCCCCCCCATCTGTGGGCCGGCATTGGCCTGCTGCTGCGTCACG
GTTTCCACGACCGACTCGAAACGGCCGCCGAGCTCGCCCACCTGCCGCTG
CAAATCTCCGATGAGGCTGGCCAGCTGCTTGATATCTGCCATGGTTACGA
ACTGCTGGTCGTCGCTCGGTGGCGGGCTGCCGCGTCCCTGGTCTCCATGC
CCATCGACAGAAAGTCGTTCGACCCCAGCAACGGAGTCCCGTGATAAGGG
GCCGTCGTGTTGCAATGGCTGCTGCTGGCGCCCGGAGTCGAAAATTGGCT
CATCTTGCGAATCGCCTTTGTGTTCCGCCACTCCCCCCGACATCGCACCC
GAAGGGACAACGAGGAGAATCTAA
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