mRNA_P-lacustris_contig93.15725.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig93.15725.1
Unique NamemRNA_P-lacustris_contig93.15725.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
BLAST of mRNA_P-lacustris_contig93.15725.1 vs. uniprot
Match: D8LEK6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEK6_ECTSI)

HSP 1 Score: 395 bits (1014), Expect = 1.240e-131
Identity = 196/222 (88.29%), Postives = 207/222 (93.24%), Query Frame = 1
Query:  256 GVGPALIQGPMSRFGDTAANTGVLALMESYDSTKDLPVGAKTFCASMCAALWRIFLMPVDTTKTIMQVEGKAGFPALVKKVKVGGPSVLYHGALAASGATLVGHYPWFFTYNYLQERIPKQDSGVKKLARNGLIGFCSSVVSDTCSNSIRVVKVYKQSHTEGVTYPQAVRDVVAKDGLAGLFGRGLKTKIMANGMQGLMFSVLWKAIEEKINK*SWRAGETL 921
            GVGPALIQGPMSRFGDTAANTGVLALMESY+STK+LPVGAKT CAS+ AALWRIFLMPVDTTKTIMQVEGK GFPALVKKVKVGGP+VLYHGALAAS ATLVGHYPWFFTYNYLQERIPKQDSG+KKLARNG+IGFCSSVVSDTCSNSIRVVKVYKQSHTEGVTY QAVRDV+AKDGL GLFGRGLKTKIMANGMQGLMFSVLWK  ++ + K  WR G  +
Sbjct:   77 GVGPALIQGPMSRFGDTAANTGVLALMESYESTKNLPVGAKTLCASVAAALWRIFLMPVDTTKTIMQVEGKEGFPALVKKVKVGGPTVLYHGALAASSATLVGHYPWFFTYNYLQERIPKQDSGIKKLARNGIIGFCSSVVSDTCSNSIRVVKVYKQSHTEGVTYVQAVRDVIAKDGLVGLFGRGLKTKIMANGMQGLMFSVLWKLSKDFV-KSGWREGSRI 297          
BLAST of mRNA_P-lacustris_contig93.15725.1 vs. uniprot
Match: A0A835ZPC0_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPC0_9STRA)

HSP 1 Score: 336 bits (861), Expect = 5.770e-109
Identity = 167/229 (72.93%), Postives = 189/229 (82.53%), Query Frame = 1
Query:  205 DGGLPHSIQPGGRKVLPGVGPALIQGPMSRFGDTAANTGVLALMESYDSTKDLPVGAKTFCASMCAALWRIFLMPVDTTKTIMQVEGKAGFPALVKKVKVGGPSVLYHGALAASGATLVGHYPWFFTYNYLQERIPKQDSGVKKLARNGLIGFCSSVVSDTCSNSIRVVKVYKQSHTEGVTYPQAVRDVVAKDGLAGLFGRGLKTKIMANGMQGLMFSVLWKAIEEKIN 891
            +GG+P   +        GV PAL+QGP+SRFGDTAANTGVLAL+ES DSTK LPVG KT CAS  AALWRI LMP+DTTKTIMQVEGK GFPAL KK K  GPSVLYHGA+AAS AT VGHYPWFFTYNYLQERIPK+ + ++KLARN +IGF SS+VSDTCSNSIRV+KVYKQS TE VTY QA ++V+A DG+ GLFGRGLKTK++ANGMQGLMFSV WK  EE+ N
Sbjct:   68 EGGIPRFYR--------GVVPALVQGPLSRFGDTAANTGVLALLESMDSTKGLPVGVKTLCASGAAALWRIVLMPIDTTKTIMQVEGKNGFPALKKKFKANGPSVLYHGAIAASAATFVGHYPWFFTYNYLQERIPKETATLRKLARNAVIGFASSLVSDTCSNSIRVIKVYKQSSTEPVTYLQAAKNVIASDGVLGLFGRGLKTKLIANGMQGLMFSVFWKFFEEQFN 288          
BLAST of mRNA_P-lacustris_contig93.15725.1 vs. uniprot
Match: A0A7S2V2G3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2G3_9STRA)

HSP 1 Score: 308 bits (788), Expect = 5.060e-98
Identity = 150/210 (71.43%), Postives = 171/210 (81.43%), Query Frame = 1
Query:  265 PALIQGPMSRFGDTAANTGVLALMESYDSTKDLPVGAKTFCASMCAALWRIFLMPVDTTKTIMQVEGKAGFPALVKKVKVGGPSVLYHGALAASGATLVGHYPWFFTYNYLQERIPKQDSGVKKLARNGLIGFCSSVVSDTCSNSIRVVKVYKQSHTEGVTYPQAVRDVVAKDGLAGLFGRGLKTKIMANGMQGLMFSVLWKAIEEKINK 894
            PAL+QGPMSRFGDTAANTG LALM+SYDST++LP   KT  AS  AA+WRIFLMPVDT KT MQVEG  G   L  K K GGP+VLYHGALAAS AT VGHYPWF T+N L  RIPK D   KKL RN  IGFC+S++SDTCSNSIRVVKVY+Q+H E V+Y  AV+ V+A+DGLAGLFGRGLKTKI+ANGMQG+MFSV+W+ IE+ INK
Sbjct:   80 PALVQGPMSRFGDTAANTGTLALMDSYDSTRNLPAAVKTVSASATAAIWRIFLMPVDTLKTTMQVEGSKGVGQLAAKFKAGGPTVLYHGALAASTATFVGHYPWFTTFNILNARIPKYDDLPKKLMRNAFIGFCASLISDTCSNSIRVVKVYRQTHPEKVSYVNAVKGVIAEDGLAGLFGRGLKTKILANGMQGIMFSVMWRMIEDMINK 289          
BLAST of mRNA_P-lacustris_contig93.15725.1 vs. uniprot
Match: A0A7S3V5E4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V5E4_9STRA)

HSP 1 Score: 298 bits (764), Expect = 1.890e-94
Identity = 143/228 (62.72%), Postives = 177/228 (77.63%), Query Frame = 1
Query:  205 DGGLPHSIQPGGRKVLPGVGPALIQGPMSRFGDTAANTGVLALMESYDSTKDLPVGAKTFCASMCAALWRIFLMPVDTTKTIMQVEGKAGFPALVKKVKVGGPSVLYHGALAASGATLVGHYPWFFTYNYLQERIPKQDSGVKKLARNGLIGFCSSVVSDTCSNSIRVVKVYKQSHTEGVTYPQAVRDVVAKDGLAGLFGRGLKTKIMANGMQGLMFSVLWKAIEEKI 888
            DGG+P   +        GV PAL QGP+SRFGDTAANTGVL L+ S+DSTKD+ VG KT CAS  AA WRI LMP+DT KT MQV G   F  +V K+K  GP+VLYHG+LA++ AT VGHYPWFFTYNYL E+IPKQD  +++L R  ++GFCSS +SDTCSNSIR+VKVYKQS TE ++YPQ V++V+A+ G+ GLF RGL+TKI+ANGMQG++FS+LWK  EE +
Sbjct:   68 DGGIPRFYR--------GVLPALAQGPLSRFGDTAANTGVLTLLNSFDSTKDMGVGVKTVCASAAAAAWRICLMPIDTVKTTMQVTGS--FSNVVNKIKASGPTVLYHGSLASASATFVGHYPWFFTYNYLSEKIPKQDDQLRELGRRAILGFCSSAISDTCSNSIRIVKVYKQSSTEAISYPQVVKNVIAESGVKGLFFRGLETKILANGMQGILFSILWKQFEETL 285          
BLAST of mRNA_P-lacustris_contig93.15725.1 vs. uniprot
Match: A0A0L0FNE2_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FNE2_9EUKA)

HSP 1 Score: 296 bits (757), Expect = 2.940e-93
Identity = 148/228 (64.91%), Postives = 177/228 (77.63%), Query Frame = 1
Query:  220 HSIQPGG-RKVLPGVGPALIQGPMSRFGDTAANTGVLALMESYDSTKDLPVGAKTFCASMCAALWRIFLMPVDTTKTIMQVEGKAGFPALVKKVKVGGPSVLYHGALAASGATLVGHYPWFFTYNYLQERIPK--QDSGVKKLARNGLIGFCSSVVSDTCSNSIRVVKVYKQSHTEGVTYPQAVRDVVAKDGLAGLFGRGLKTKIMANGMQGLMFSVLWKAIEEKINK 894
            H  + GG R+   G GPAL QGP+SRFGDTAAN GVLAL++SYD+T +LPVG KT  AS  AA WR+FLMPVDT KT MQVEG  G   L  K+  GGP VLY GA+AASGAT VGHYPWFF YN LQE++PK  +D  +KKL RN +IGFC+SVVSDTCSNSIRVVK  KQ+    ++YP+ V+ V+ +DGL GLFGRGLKT+I+AN MQG++FSVLWKA+EE+ NK
Sbjct:   70 HLYKEGGIRRFYRGYGPALFQGPLSRFGDTAANAGVLALLDSYDTTSNLPVGVKTIFASAAAATWRVFLMPVDTLKTTMQVEGAKGVSQLRGKLSSGGPKVLYSGAIAASGATFVGHYPWFFVYNLLQEKLPKAEKDETLKKLGRNAVIGFCASVVSDTCSNSIRVVKTTKQTAAVQMSYPETVKMVIKQDGLIGLFGRGLKTRILANAMQGMLFSVLWKALEEQWNK 297          
BLAST of mRNA_P-lacustris_contig93.15725.1 vs. uniprot
Match: A0A7S1BP81_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BP81_9STRA)

HSP 1 Score: 293 bits (751), Expect = 1.570e-92
Identity = 148/230 (64.35%), Postives = 180/230 (78.26%), Query Frame = 1
Query:  205 DGGLPHSIQPGGRKVLPGVGPALIQGPMSRFGDTAANTGVLALMESYDSTKDLPVGAKTFCASMCAALWRIFLMPVDTTKTIMQVEGKAGFPALVKKVKVGGPSVLYHGALAASGATLVGHYPWFFTYNYLQERIPKQDSGVKKLARNGLIGFCSSVVSDTCSNSIRVVKVYKQSHTEGVTYPQAVRDVVAKDGLAGLFGRGLKTKIMANGMQGLMFSVLWKAIEEKINK 894
            DGG+P   +        GV PALIQGPMSRFGDTAANTG++ LM SYDSTK+L VG KT  AS  AAL+RIFLMPVDT KT MQVEG  G  A+VKKVK+GG   LY G+LAA+ AT VGHYPWFFTYNYL +++ ++++ + KL R  LIGFCSS +SDTCSNSIRVVKVYKQ+H + +TYPQ VR+V+++ GL GLF RGL+TKI+ANGMQG++FS+LWK  EE + K
Sbjct:   65 DGGIPRFYR--------GVLPALIQGPMSRFGDTAANTGMMTLMNSYDSTKNLAVGVKTISASASAALFRIFLMPVDTCKTTMQVEGNFG--AVVKKVKIGGVPALYQGSLAAASATFVGHYPWFFTYNYLSDKLEERETTLGKLGRRALIGFCSSAISDTCSNSIRVVKVYKQAHKDVLTYPQVVRNVISESGLQGLFLRGLETKILANGMQGILFSILWKQFEELLFK 284          
BLAST of mRNA_P-lacustris_contig93.15725.1 vs. uniprot
Match: A0A4D9D3X0_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D3X0_9STRA)

HSP 1 Score: 293 bits (749), Expect = 5.130e-92
Identity = 146/228 (64.04%), Postives = 171/228 (75.00%), Query Frame = 1
Query:  205 DGGLPHSIQPGGRKVLPGVGPALIQGPMSRFGDTAANTGVLALMESYDSTKDLPVGAKTFCASMCAALWRIFLMPVDTTKTIMQVEGKAGFPALVKKVKVGGPSVLYHGALAASGATLVGHYPWFFTYNYLQERIPKQDSGVKKLARNGLIGFCSSVVSDTCSNSIRVVKVYKQSHTEGVTYPQAVRDVVAKDGLAGLFGRGLKTKIMANGMQGLMFSVLWKAIEEKI 888
            DGG+P   Q        G+ PAL+QGP SRFGDTAAN GV+ L++S+D TKDLPV  KT  AS  AA WRIFLMPVDT KTI QVEGK GF  L+ K+K  GP V+YHGALAA  A L+GHYPWF TYNYLQE +PK D    KL RN LIGF SS +SDT SNS+RVVKVYKQ+++E + YP AVR ++A DGL GLFGRGL TKI ANG+QGL+FSVLWK I++ +
Sbjct:   77 DGGIPRFYQ--------GLLPALVQGPASRFGDTAANAGVITLLDSFDETKDLPVLVKTAAASATAASWRIFLMPVDTLKTIKQVEGKDGFKVLMAKMKTHGPGVMYHGALAAFAANLLGHYPWFATYNYLQENLPKTDDFKMKLCRNALIGFSSSAISDTVSNSVRVVKVYKQANSEHIAYPDAVRRIIAADGLVGLFGRGLSTKIFANGLQGLVFSVLWKLIDDHL 296          
BLAST of mRNA_P-lacustris_contig93.15725.1 vs. uniprot
Match: A0A7S2A6F7_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A6F7_TRICV)

HSP 1 Score: 291 bits (745), Expect = 1.420e-91
Identity = 147/228 (64.47%), Postives = 174/228 (76.32%), Query Frame = 1
Query:  205 DGGLPHSIQPGGRKVLPGVGPALIQGPMSRFGDTAANTGVLALMESYDSTKDLPVGAKTFCASMCAALWRIFLMPVDTTKTIMQVEGKAGFPALVKKVKVGGPSVLYHGALAASGATLVGHYPWFFTYNYLQERIPKQDSGVKKLARNGLIGFCSSVVSDTCSNSIRVVKVYKQSHTEGVTYPQAVRDVVAKDGLAGLFGRGLKTKIMANGMQGLMFSVLWKAIEEKI 888
            DGG+P   +        GV PALIQGP+SRFGDTAANTGVL LM S D+TKDL VG KT  AS  AA +RIFLMPVDT KT MQV GK G  A+V KVK+GG   LY G+LAA+ AT VGHYPWFFTYNYL E+IPKQD+ + +L R  L+GFCSS +SDTCSNSIRVVKVYKQSH E ++YPQ V+ V+ + G+ GL  RGL+TKI+ANGMQG++FS+LWK  EE +
Sbjct:   69 DGGIPRFYR--------GVAPALIQGPLSRFGDTAANTGVLTLMNSMDATKDLSVGFKTVAASGAAAAFRIFLMPVDTVKTTMQVTGKFG--AVVDKVKIGGVPALYQGSLAAASATFVGHYPWFFTYNYLSEKIPKQDTQLAELGRRALLGFCSSAISDTCSNSIRVVKVYKQSHPENLSYPQVVQRVIQESGIKGLMFRGLETKILANGMQGILFSILWKQFEETL 286          
BLAST of mRNA_P-lacustris_contig93.15725.1 vs. uniprot
Match: A0A7S3HQJ3_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HQJ3_9STRA)

HSP 1 Score: 291 bits (744), Expect = 2.600e-91
Identity = 143/230 (62.17%), Postives = 177/230 (76.96%), Query Frame = 1
Query:  205 DGGLPHSIQPGGRKVLPGVGPALIQGPMSRFGDTAANTGVLALMESYDSTKDLPVGAKTFCASMCAALWRIFLMPVDTTKTIMQVEGKAGFPALVKKVKVGGPSVLYHGALAASGATLVGHYPWFFTYNYLQERIPKQDSGVKKLARNGLIGFCSSVVSDTCSNSIRVVKVYKQSHTEGVTYPQAVRDVVAKDGLAGLFGRGLKTKIMANGMQGLMFSVLWKAIEEKINK 894
            DGG+P   +        G+ PAL+QGP+SRFGDTAANTG LA ++++++T +LPV AKT  AS+ AAL+RI LMP+DT KT MQVEGK G   L+ K +  GPS  + GA+AAS AT VGHYPWFF YNYL E +P+ D   KKLAR+ +IGFC+S VSDTCSNSIRV+KVYKQS+TE ++Y +A+  V+ +DGL GLFGRGLKTKI+ANGMQGLMFSVLWK I+EK  K
Sbjct:   70 DGGIPRFYR--------GLVPALLQGPLSRFGDTAANTGTLAALDAFETTAELPVAAKTVAASVAAALFRILLMPIDTVKTTMQVEGKDGMKKLMTKFRAVGPSTFFQGAIAASAATFVGHYPWFFVYNYLNEVLPRYDETPKKLARSAVIGFCASAVSDTCSNSIRVIKVYKQSNTEKISYSEALGRVIKEDGLGGLFGRGLKTKILANGMQGLMFSVLWKLIDEKFFK 291          
BLAST of mRNA_P-lacustris_contig93.15725.1 vs. uniprot
Match: A0A7R9YEQ5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YEQ5_9STRA)

HSP 1 Score: 291 bits (745), Expect = 4.170e-91
Identity = 150/232 (64.66%), Postives = 178/232 (76.72%), Query Frame = 1
Query:  205 DGGLPHSIQPGGRKVLPGVGPALIQGPMSRFGDTAANTGVLALMESYDSTKDLPVGAKTFCASMCAALWRIFLMPVDTTKTIMQVEGKAGFPALVKKVKVGGPSVLYHGALAASGATLVGHYPWFFTYNYLQERIPK-QD-SGVKKLARNGLIGFCSSVVSDTCSNSIRVVKVYKQSHTEGVTYPQAVRDVVAKDGLAGLFGRGLKTKIMANGMQGLMFSVLWKAIEEKINK 894
            +GG+P   +        GV PAL+QGP+SRFGDTAANTGV+ LM+SYDSTKDLP   KT  AS+ AA WRIFLMP+DT KT +QVEG+     L KKV   GP VLY GALAA+ AT VGHYPWF TYN LQE IPK QD   +KK  RN +IGFCSSVVSDTCSNSIRVVKVYKQS+ E ++YP+ VR V+ +DG+ GLFGRGL+TKI++NG+QG+MFSVLWK I++K  K
Sbjct:   98 EGGIPRFYR--------GVLPALVQGPLSRFGDTAANTGVMVLMDSYDSTKDLPAVVKTGGASLAAACWRIFLMPIDTVKTTLQVEGRQALSQLFKKVGNHGPHVLYAGALAAASATFVGHYPWFATYNTLQETIPKPQDHETLKKFGRNAMIGFCSSVVSDTCSNSIRVVKVYKQSNAEALSYPEVVRRVIKEDGVMGLFGRGLQTKILSNGLQGIMFSVLWKYIDDKFFK 321          
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig93.15725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEK6_ECTSI1.240e-13188.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZPC0_9STRA5.770e-10972.93Mitochondrial carrier domain-containing protein n=... [more]
A0A7S2V2G3_9STRA5.060e-9871.43Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3V5E4_9STRA1.890e-9462.72Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A0L0FNE2_9EUKA2.940e-9364.91Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
A0A7S1BP81_9STRA1.570e-9264.35Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A4D9D3X0_9STRA5.130e-9264.04Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S2A6F7_TRICV1.420e-9164.47Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S3HQJ3_9STRA2.600e-9162.17Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7R9YEQ5_9STRA4.170e-9164.66Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig93contigP-lacustris_contig93:218477..223223 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score371.7
Seed ortholog evalue2.2e-100
Seed eggNOG ortholog2880.D8LEK6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitochondrial carrier protein
EggNOG OGs28MPG@1,2QU7F@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1631
Cds size612
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig93.15725.1prot_P-lacustris_contig93.15725.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig93 219442..222489 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817359.3263779-UTR-P-lacustris_contig93:218476..2186321622817359.3263779-UTR-P-lacustris_contig93:218476..218632Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig93 218477..218632 +
1693495004.4562745-UTR-P-lacustris_contig93:218476..2186321693495004.4562745-UTR-P-lacustris_contig93:218476..218632Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig93 218477..218632 +
1622817359.3387156-UTR-P-lacustris_contig93:219039..2191021622817359.3387156-UTR-P-lacustris_contig93:219039..219102Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig93 219040..219102 +
1693495004.4690583-UTR-P-lacustris_contig93:219039..2191021693495004.4690583-UTR-P-lacustris_contig93:219039..219102Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig93 219040..219102 +
1622817359.3484817-UTR-P-lacustris_contig93:219375..2194411622817359.3484817-UTR-P-lacustris_contig93:219375..219441Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig93 219376..219441 +
1693495004.4795985-UTR-P-lacustris_contig93:219375..2194411693495004.4795985-UTR-P-lacustris_contig93:219375..219441Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig93 219376..219441 +
1622817359.409571-UTR-P-lacustris_contig93:222489..2232231622817359.409571-UTR-P-lacustris_contig93:222489..223223Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig93 222490..223223 +
1693495004.5299416-UTR-P-lacustris_contig93:222489..2232231693495004.5299416-UTR-P-lacustris_contig93:222489..223223Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig93 222490..223223 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817359.3584647-CDS-P-lacustris_contig93:219441..2195841622817359.3584647-CDS-P-lacustris_contig93:219441..219584Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig93 219442..219584 +
1693495004.490119-CDS-P-lacustris_contig93:219441..2195841693495004.490119-CDS-P-lacustris_contig93:219441..219584Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig93 219442..219584 +
1622817359.3722777-CDS-P-lacustris_contig93:220248..2203951622817359.3722777-CDS-P-lacustris_contig93:220248..220395Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig93 220249..220395 +
1693495004.5015702-CDS-P-lacustris_contig93:220248..2203951693495004.5015702-CDS-P-lacustris_contig93:220248..220395Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig93 220249..220395 +
1622817359.3842301-CDS-P-lacustris_contig93:221172..2213231622817359.3842301-CDS-P-lacustris_contig93:221172..221323Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig93 221173..221323 +
1693495004.5119858-CDS-P-lacustris_contig93:221172..2213231693495004.5119858-CDS-P-lacustris_contig93:221172..221323Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig93 221173..221323 +
1622817359.397932-CDS-P-lacustris_contig93:222318..2224891622817359.397932-CDS-P-lacustris_contig93:222318..222489Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig93 222319..222489 +
1693495004.5215104-CDS-P-lacustris_contig93:222318..2224891693495004.5215104-CDS-P-lacustris_contig93:222318..222489Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig93 222319..222489 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig93.15725.1

>prot_P-lacustris_contig93.15725.1 ID=prot_P-lacustris_contig93.15725.1|Name=mRNA_P-lacustris_contig93.15725.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=204bp
MSRFGDTAANTGVLALMESYDSTKDLPVGAKTFCASMCAALWRIFLMPVD
TTKTIMQVEGKAGFPALVKKVKVGGPSVLYHGALAASGATLVGHYPWFFT
YNYLQERIPKQDSGVKKLARNGLIGFCSSVVSDTCSNSIRVVKVYKQSHT
EGVTYPQAVRDVVAKDGLAGLFGRGLKTKIMANGMQGLMFSVLWKAIEEK
INK*
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mRNA from alignment at P-lacustris_contig93:218477..223223+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig93.15725.1 ID=mRNA_P-lacustris_contig93.15725.1|Name=mRNA_P-lacustris_contig93.15725.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=4747bp|location=Sequence derived from alignment at P-lacustris_contig93:218477..223223+ (Pleurocladia lacustris SAG_25_93)
AGGGTGCTTGCAACTCAAATCAAATCAAGTCATGTCGGGCACGCCGGTTA AAGCGCCGCCGACGACCCAGGAGATCTTGGATAAATCCCTCAAGAGAGCC CTCGGGGGTGGCTTCGCCGGGGCGCTTGCGATGGGGATCAACGTCGGCTC CTTGATGTGAGTCGGGAGGCCGCTACGGCTCGCCGCAAGCTGCGGAACCG TTTCGTACGCTGTTGGAGTAGGGTACCTAAGCGGGTATACGCATGCAGTT GAAGCTGTAGTCGGTTTGCGCGGCGTTTGTCGCGCTGGTTGCGGCGGGGA TAAGCGCAGAAGGTTGGATCTACGGATTGTCGGCAATTCCCTCCGCACGG GTTTTACCGAAGAGCAAGCGCGAGCGGAAACCAAACAACGTAGAGCCTAA ACAGGGTCGCAGAACCGGAACGTGGCCACAATACCTATACGCCCGACGCG AAACCCGCGCACGACGCGTAGATATATGAGTGTTCGGACCACACCCTTCC CCGCCCTCGGCTCCGCTCCTAACCCTAACCCGCCCGCATCTGTGCGCGGC ATTGCAATGTTAGGTGGATGCGGACGACCATCAACTACCAGCTGCGGCAT GGCGGAGGAACGATGGAGGCCTTCCGGTATGTCCTTTTCGCACCCACTCC CCCGTAATGAAAACGCCGGGGTTCCGTGGAATTGTTTGCTGTGTTGCGCC AACTCAAGGGCACGCACGAGCTTGGCTGTAACAAGCAAACCGTTTGACTG TTTGTGCTGTTGTGTTCATACTTGTCCCCTACCGGGTGTGCCGTACTGGC GAACCGTTGCGGGCATGTCCCTCTCCATGCCATACCGTTCACCATGATCG CACCGCCCCATTCCCCGCGGCCGCTCCTGGGCTTCCTGCTGCCCCGCAGC ACTCTATACAGCCAGGGGGTCGGAAGGTTCTACCGGGGGTCGGGCCGGCT TTGATCCAGGGACCGATGTCGCGTTTCGGGGACACGGCAGCCAACACGGG CGTTTTGGCTTTGATGGAGTCGTACGACTCGACCAAGGATTTGCCCGTCG GCGCGAAGACTTTCTGCGCTTCGATGTGTGCCGCGTTGTGGAGAATCTTT TTGATGCCGTGAGTGGTTTTTGTTGTTGTTGTTGTTGCCGTTGCCGTTTG ACGTCGGTGTTGATGGTGTCGTCCGCATTCGGTGGAGGGTGGTGTTGTGG TTGCTAGACATGAACCATCAACTATGGTGGCCGCTCTCCTTGCTCATCCG GTCATTCGAAATCATCTAGATCATCTACCATCTTCCCGGATCAAACCTGT TGGATGTTCGTCATGAGCTTGATTTTCCCCTTGAGGGTGGCTTCAGTGGG CACTCCGAGTGTTGTTTAGCCCTTGCGTGTTTTCGGACGTCGCTTGTCGT TGGACGCCACAACGATGGCCGTTTTCAATGAGTAGGGTGTGAAGCAGTCA CAGAGACACGGTGCTGAACTACTGTTCGTTCTCCGACACTAGGGGTGGTC CCTCCTTGTTTCGGAGATTTTTGCTGTCAATCCCGTGTTTTTGCCCTTGG AGGGGTAGGAGACCTGGCGTACGCAACCATGCCTGTGACTGCTGCAAGCG CTGGAAAGGGGACCAACGCCCCTTGCTCCGTTCGCCTAGCGTAACCGACA GCTGTCCTTTGGCCTCGCCATTTTTATTTTTATTCGGGGTGGGCACGCCT TTCGTGCTTGGACATCTTTCGTAACGGCCTTGTTTGCCGCACCTTTTTTC TCGCTCCACATAAAAAAAAAAGGGTGGACACGACTAAGACCATCATGCAG GTGGAAGGAAAGGCAGGATTCCCGGCGCTCGTCAAGAAGGTCAAGGTGGG CGGTCCGTCGGTGCTCTACCACGGGGCTTTGGCGGCGTCGGGGGCGACGT TGGTGGGACATTACCCTTGGTGAGGGCAAGCGCACGACTCATTTTTGTTT CGTTTTTGCTTCTGTTGTTGTTGTTTCCATGGTGTCTCGGATCTGTCTGC TTTACCTACTTGGGGGGGGGGGTCCAGCCGAAGGCTCATTGTCCCCGAGG TCCCCCCGCCCGGCATTTCTTGACGTTGCATTCCCCCTTGTTTTTGTTTG CGACAAGGCTGTAGCAGGGAATTGGTGCATCCTTTCTGTACATCGAAACC CTAAGCCACCCTTTGTGTGCGCATCGAAACCTTATCCCTAACCCTAAAAC CATTGTGTGCATCGAAGTGACGGTTCGCCAGTTCTAATGTGCTCACGGAA ACCCGACCCTCGATGAGGATTGGCGTCGTGGTCGGTGTTGGTACCCCGCT GTCGGCGCTGGGGTTCCATCGGCTGAGTCTCGACCCTAGTTTTCTATCGA ACGATCCATGTGCTCGCGAGTTTATTGTTTGTGCTCCGCCTCATGCCACA CCTTCGTCTCCCTCGTAACTGTCAAACACCCCTTGGAGTAGCTGTCATCG CATCGCTGCTGTCGAGCGCTCGGTCGAAAACCGAACAAATAATGCCCGGC GGCCGCGCGGCAAAAGGCTCGAGCACACACATGTACCACCGCGAGGTCGA GCCTCTGATATCTCGGGCGGGCGTCGTCACTCCACCGTCACATGACCCCC TGAGGAACTGGTGTCTCGGGTGACAGTTCTTCGTCTTTTCGATGTTTATT TTTTTTTCTTGCTCAAAAATGAGAAAAATCGGTGGTGTTGTTTCAGGTTT TTCACGTACAACTACCTGCAAGAGCGCATCCCCAAGCAGGACTCTGGGGT TAAAAAGCTCGCGCGCAATGGCCTGATCGGCTTCTGCTCGTCGGTCGTGT CCGACACGTGCTCCAACTCCATTCGCGTCGTCAAGGTCTACAAGCAGGTA GACATGCTGACATCCTGTTGGCTTTTTTGTGCTTACAGCTGTGTGACGGT GTTTGTCTGCGGTGGCTTTTTTGGGAGCATCCATGGACGTGCCTGTATCT TCTCGAGATATCCAGAGCCGTACTGTAGGGCGTAGTAACCGGGTGGTGGT GGTGGTGTGGTTTGTCTGCACGTTCTAACCTACCCAGCACCTTCTCTCGT GTACTCCGTCTCAGTCAAAGAAGTGCATTTTGCTTGTCACAGGTCATGAC TCAAAATAAGGCGCAAAGTAAAATCGAGATAAGGTCCTGCCTCCCGAAAG AGTAATAAACTTCCTGCGATTGCTTTAGTCCAGGGACAAAAAAAGCAGAA CTGAGTAGAGAGTCCGCCACTTCAAATAAAAGCAACCCTCGGCAAGAGCT ATCCGCGGACCCCTGCGAGGCCGTGGGGTGGAGGCTGTCTTTTTCCCGTC ATCCCGGCCTGACCCCGCCCACGTCCTGTGGGTGTTAGAGCGCTGTACAG ATCAAATCAACAACAGAATCTGGCAACCAAACGAAATACGACCCCGCACA TCACGTAGGGTAGTATACTCTGTCCTAGGTCTCTTGTTCTCCACGCACCC AACGCCATCTCGGGGCTGGCTCATCGTCTTAGCTAAAAAAGCAGGCAGGC GAGAAGCGTGCTCGTGAATCCCGTCCATGTGCGGGTTCGAGCGGCAACGC ATGTTTGCGGGTCGGGTGGGTGAAACCGTCCTGTGCTGGGAAAGTGTGTT TTAGCGTCGTGGCGCTTGTCTTCTGCGTTGGACGCGAACGATCCTTGCGT TCGCGAGGTACGAGCTCGAAGCCTGTCGAACTGTACGCTGCGCGAGCGCC CCTGCTCACGCCGCCCTTCTGGCTTGGGCTACCTCAATGCCCCCCTCCGA ATTTCGTGTGCCTAACGACAACGCATCTGCCGACCGCCATGAACACCACC ATGCGAAAATCAACAACGGCGACGACGACGACAACGACGAAGTCGCATAC GGAAGGAGTCACGTATCCTCAGGCCGTTCGCGATGTGGTCGCGAAGGATG GACTCGCCGGCCTATTCGGCCGAGGCTTGAAGACGAAGATCATGGCCAAC GGGATGCAGGGGCTCATGTTCTCCGTCCTCTGGAAGGCTATCGAGGAAAA GATCAACAAGTGAAGCTGGAGAGCTGGAGAGACACTGGGTTGTTGTAGCG TTCGAGGCAGCGGAGCTAACGCGCTAGCCTAGTTTTGGGTTTGTGCAGCG GGCGGTTTGGGGCGATCCCGTCCATTAATCTCGCTCCGCGACACGATCTG TGTCTTCAGCCACGACTTTATTGTTTTGCAGCCGATGACACCCATCCATC CATCGCCCATGGTTTCCTGGCAGTAGGCTCGCGTATCTTGATGCTCGCCT CGTAGGGTGATCGAAAATGCCGCTGACTTCTGGAGCACCAGTGACGCATC GTCTACCACTTGTGGGATTGTGGTGGTTAGTTGACTTGGCGTCCCTTCGC GGGGGTTGGTTGCGTGCAAGCTGCTAAAAGTTGCGCTCGGCATAGGGTGT GGGTTGGAGTGGGTGTAGGTGGGGCAGGGGCAACCATCGCATTGCCCTGT GTCGCTGCGGGGGATACGGCGAGGAGGGCTTGCTGCTTCTGCTGCTGCTG CCGCCGCCGTCGCTGCTGCCTTGTTTGTTCCTTTCTCGCCCCATTCCAAT TCATCTCGACAGGGTAAAGTTTTGTTGCGTGTGTTTCGTCGGCTTGTTTT CGTTGTTGCTCGTGCAACGTACGTGTCGCGTGCGCATGACAGGGAGAGTG TGTTACGTGTCGTAGGGTCGAATAAGACTTCAGTTTCCTGCCAGAGGTCC TACAGTACGTGCTTGCGAGGTGGCAGCGAAAGCCTGAGACCTTACTC
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Coding sequence (CDS) from alignment at P-lacustris_contig93:218477..223223+

>mRNA_P-lacustris_contig93.15725.1 ID=mRNA_P-lacustris_contig93.15725.1|Name=mRNA_P-lacustris_contig93.15725.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=1224bp|location=Sequence derived from alignment at P-lacustris_contig93:218477..223223+ (Pleurocladia lacustris SAG_25_93)
ATGTCGCGTTTCGGGGACACGGCAGCCAACACGGGCGTTTTGGCTTTGAT
GGAGTCGTACGACTCGACCAAGGATTTGCCCGTCGGCGCGAAGACTTTCT
GCGCTTCGATGTGTGCCGCGTTGTGGAGAATCTTTTTGATGCCATGTCGC
GTTTCGGGGACACGGCAGCCAACACGGGCGTTTTGGCTTTGATGGAGTCG
TACGACTCGACCAAGGATTTGCCCGTCGGCGCGAAGACTTTCTGCGCTTC
GATGTGTGCCGCGTTGTGGAGAATCTTTTTGATGCCGGTGGACACGACTA
AGACCATCATGCAGGTGGAAGGAAAGGCAGGATTCCCGGCGCTCGTCAAG
AAGGTCAAGGTGGGCGGTCCGTCGGTGCTCTACCACGGGGCTTTGGCGGC
GTCGGGGGCGACGTTGGTGGGACATTACCCTTGGGTGGACACGACTAAGA
CCATCATGCAGGTGGAAGGAAAGGCAGGATTCCCGGCGCTCGTCAAGAAG
GTCAAGGTGGGCGGTCCGTCGGTGCTCTACCACGGGGCTTTGGCGGCGTC
GGGGGCGACGTTGGTGGGACATTACCCTTGGTTTTTCACGTACAACTACC
TGCAAGAGCGCATCCCCAAGCAGGACTCTGGGGTTAAAAAGCTCGCGCGC
AATGGCCTGATCGGCTTCTGCTCGTCGGTCGTGTCCGACACGTGCTCCAA
CTCCATTCGCGTCGTCAAGGTCTACAAGCAGGTTTTTCACGTACAACTAC
CTGCAAGAGCGCATCCCCAAGCAGGACTCTGGGGTTAAAAAGCTCGCGCG
CAATGGCCTGATCGGCTTCTGCTCGTCGGTCGTGTCCGACACGTGCTCCA
ACTCCATTCGCGTCGTCAAGGTCTACAAGCAGTCGCATACGGAAGGAGTC
ACGTATCCTCAGGCCGTTCGCGATGTGGTCGCGAAGGATGGACTCGCCGG
CCTATTCGGCCGAGGCTTGAAGACGAAGATCATGGCCAACGGGATGCAGG
GGCTCATGTTCTCCGTCCTCTGGAAGGCTATCGAGGAAAAGATCAACAAG
TGATCGCATACGGAAGGAGTCACGTATCCTCAGGCCGTTCGCGATGTGGT
CGCGAAGGATGGACTCGCCGGCCTATTCGGCCGAGGCTTGAAGACGAAGA
TCATGGCCAACGGGATGCAGGGGCTCATGTTCTCCGTCCTCTGGAAGGCT
ATCGAGGAAAAGATCAACAAGTGA
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