mRNA_P-lacustris_contig93.15724.1 (mRNA) Pleurocladia lacustris SAG_25_93

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-lacustris_contig93.15724.1
Unique NamemRNA_P-lacustris_contig93.15724.1
TypemRNA
OrganismPleurocladia lacustris SAG_25_93 (Pleurocladia lacustris SAG_25_93)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-lacustris_contig93.15724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-lacustris_contig93contigP-lacustris_contig93:210588..210917 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pleurocladia lacustris SAG_25_932021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size330
Cds size303
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817357.082528-UTR-P-lacustris_contig93:210587..2106141622817357.082528-UTR-P-lacustris_contig93:210587..210614Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig93 210588..210614 +
1693495002.5753424-UTR-P-lacustris_contig93:210587..2106141693495002.5753424-UTR-P-lacustris_contig93:210587..210614Pleurocladia lacustris SAG_25_93UTRP-lacustris_contig93 210588..210614 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817357.0935037-CDS-P-lacustris_contig93:210614..2109171622817357.0935037-CDS-P-lacustris_contig93:210614..210917Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig93 210615..210917 +
1693495002.5857882-CDS-P-lacustris_contig93:210614..2109171693495002.5857882-CDS-P-lacustris_contig93:210614..210917Pleurocladia lacustris SAG_25_93CDSP-lacustris_contig93 210615..210917 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-lacustris_contig93.15724.1prot_P-lacustris_contig93.15724.1Pleurocladia lacustris SAG_25_93polypeptideP-lacustris_contig93 210615..210917 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-lacustris_contig93.15724.1

>prot_P-lacustris_contig93.15724.1 ID=prot_P-lacustris_contig93.15724.1|Name=mRNA_P-lacustris_contig93.15724.1|organism=Pleurocladia lacustris SAG_25_93|type=polypeptide|length=101bp
MLRHTCIKRDVMEEMILLAQSKEVSSEESVSFATPIPTWPQVLLEIAMCT
TAGSAMPAAPNAKDILLCTQPTINRLISNFLISNFGTTWGWAQQSRARWP
*
back to top

mRNA from alignment at P-lacustris_contig93:210588..210917+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-lacustris_contig93.15724.1 ID=mRNA_P-lacustris_contig93.15724.1|Name=mRNA_P-lacustris_contig93.15724.1|organism=Pleurocladia lacustris SAG_25_93|type=mRNA|length=330bp|location=Sequence derived from alignment at P-lacustris_contig93:210588..210917+ (Pleurocladia lacustris SAG_25_93)
TACCGCAGCAGTGATTCATGGTACCGCATGCTGAGACATACCTGTATAAA
ACGTGATGTGATGGAGGAGATGATCTTGTTAGCCCAGAGCAAAGAGGTGA
GTAGTGAGGAAAGCGTGTCTTTCGCTACACCTATTCCCACTTGGCCTCAA
GTCCTATTGGAGATAGCTATGTGCACAACGGCTGGATCCGCAATGCCGGC
TGCTCCGAATGCGAAAGATATATTGTTGTGCACGCAACCCACAATCAATC
GTCTAATTTCTAATTTTCTAATTTCGAATTTCGGCACCACCTGGGGGTGG
GCACAACAATCTCGGGCCCGATGGCCATGA
back to top

Coding sequence (CDS) from alignment at P-lacustris_contig93:210588..210917+

>mRNA_P-lacustris_contig93.15724.1 ID=mRNA_P-lacustris_contig93.15724.1|Name=mRNA_P-lacustris_contig93.15724.1|organism=Pleurocladia lacustris SAG_25_93|type=CDS|length=606bp|location=Sequence derived from alignment at P-lacustris_contig93:210588..210917+ (Pleurocladia lacustris SAG_25_93)
ATGCTGAGACATACCTGTATAAAACGTGATGTGATGGAGGAGATGATCTT
GTTAGCCCAGAGCAAAGAGGTGAGTAGTGAGGAAAGCGTGTCTTTCGCTA
CACCTATTCCCACTTGGCCTCAAGTCCTATTGGAGATAGCTATGTGCACA
ACGGCTGGATCCGCAATGCCGGCTGCTCCGAATGCGAAAGATATATTGTT
GTGCACGCAACCCACAATCAATCGTCTAATTTCTAATTTTCTAATTTCGA
ATTTCGGCACCACCTGGGGGTGGGCACAACAATCTCGGGCCCGATGGCCA
TGAATGCTGAGACATACCTGTATAAAACGTGATGTGATGGAGGAGATGAT
CTTGTTAGCCCAGAGCAAAGAGGTGAGTAGTGAGGAAAGCGTGTCTTTCG
CTACACCTATTCCCACTTGGCCTCAAGTCCTATTGGAGATAGCTATGTGC
ACAACGGCTGGATCCGCAATGCCGGCTGCTCCGAATGCGAAAGATATATT
GTTGTGCACGCAACCCACAATCAATCGTCTAATTTCTAATTTTCTAATTT
CGAATTTCGGCACCACCTGGGGGTGGGCACAACAATCTCGGGCCCGATGG
CCATGA
back to top